Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00503

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00501 and MIT1002_00502 are separated by 233 nucleotidesMIT1002_00502 and MIT1002_00503 are separated by 273 nucleotidesMIT1002_00503 and MIT1002_00504 overlap by 1 nucleotidesMIT1002_00504 and MIT1002_00505 are separated by 80 nucleotides MIT1002_00501: MIT1002_00501 - hypothetical protein, at 545,598 to 546,059 _00501 MIT1002_00502: MIT1002_00502 - Protein of unknown function, DUF, at 546,293 to 546,670 _00502 MIT1002_00503: MIT1002_00503 - Acetolactate synthase isozyme 3 large subunit, at 546,944 to 548,662 _00503 MIT1002_00504: MIT1002_00504 - Acetolactate synthase isozyme 3 small subunit, at 548,662 to 549,159 _00504 MIT1002_00505: MIT1002_00505 - hypothetical protein, at 549,240 to 550,301 _00505 Position (kb) 546 547 548 549Strain fitness (log2 ratio) -10 -9 -8 -7 -6 -5 -4 -3 -2 -1 0 1 2at 545.993 kb on + strand, within MIT1002_00501at 545.998 kb on - strand, within MIT1002_00501at 546.036 kb on - strandat 546.106 kb on + strandat 546.179 kb on + strandat 546.285 kb on + strandat 546.286 kb on + strandat 546.287 kb on + strandat 546.295 kb on - strandat 546.295 kb on - strandat 546.402 kb on - strand, within MIT1002_00502at 546.417 kb on - strand, within MIT1002_00502at 546.510 kb on + strand, within MIT1002_00502at 546.510 kb on - strand, within MIT1002_00502at 546.523 kb on + strand, within MIT1002_00502at 546.610 kb on - strand, within MIT1002_00502at 546.671 kb on + strandat 546.892 kb on - strandat 546.903 kb on - strandat 546.915 kb on + strandat 546.917 kb on + strandat 546.932 kb on + strandat 546.965 kb on + strandat 547.020 kb on - strandat 547.071 kb on - strandat 547.117 kb on - strand, within MIT1002_00503at 547.129 kb on - strand, within MIT1002_00503at 547.154 kb on + strand, within MIT1002_00503at 547.162 kb on - strand, within MIT1002_00503at 547.162 kb on - strand, within MIT1002_00503at 547.164 kb on + strand, within MIT1002_00503at 547.172 kb on - strand, within MIT1002_00503at 547.172 kb on - strand, within MIT1002_00503at 547.196 kb on + strand, within MIT1002_00503at 547.196 kb on - strand, within MIT1002_00503at 547.231 kb on - strand, within MIT1002_00503at 547.297 kb on + strand, within MIT1002_00503at 547.305 kb on + strand, within MIT1002_00503at 547.313 kb on - strand, within MIT1002_00503at 547.358 kb on - strand, within MIT1002_00503at 547.483 kb on + strand, within MIT1002_00503at 547.518 kb on + strand, within MIT1002_00503at 547.552 kb on + strand, within MIT1002_00503at 547.552 kb on + strand, within MIT1002_00503at 547.552 kb on + strand, within MIT1002_00503at 547.560 kb on - strand, within MIT1002_00503at 547.566 kb on + strand, within MIT1002_00503at 547.569 kb on - strand, within MIT1002_00503at 547.576 kb on + strand, within MIT1002_00503at 547.579 kb on - strand, within MIT1002_00503at 547.584 kb on - strand, within MIT1002_00503at 547.639 kb on + strand, within MIT1002_00503at 547.649 kb on + strand, within MIT1002_00503at 547.723 kb on + strand, within MIT1002_00503at 547.739 kb on - strand, within MIT1002_00503at 547.741 kb on + strand, within MIT1002_00503at 547.751 kb on + strand, within MIT1002_00503at 547.822 kb on + strand, within MIT1002_00503at 547.861 kb on - strand, within MIT1002_00503at 548.027 kb on - strand, within MIT1002_00503at 548.052 kb on + strand, within MIT1002_00503at 548.064 kb on - strand, within MIT1002_00503at 548.083 kb on - strand, within MIT1002_00503at 548.155 kb on + strand, within MIT1002_00503at 548.163 kb on - strand, within MIT1002_00503at 548.163 kb on - strand, within MIT1002_00503at 548.174 kb on - strand, within MIT1002_00503at 548.190 kb on + strand, within MIT1002_00503at 548.258 kb on + strand, within MIT1002_00503at 548.258 kb on + strand, within MIT1002_00503at 548.258 kb on + strand, within MIT1002_00503at 548.258 kb on + strand, within MIT1002_00503at 548.258 kb on + strand, within MIT1002_00503at 548.266 kb on - strand, within MIT1002_00503at 548.266 kb on - strand, within MIT1002_00503at 548.266 kb on - strand, within MIT1002_00503at 548.266 kb on - strand, within MIT1002_00503at 548.266 kb on - strand, within MIT1002_00503at 548.290 kb on - strand, within MIT1002_00503at 548.317 kb on + strand, within MIT1002_00503at 548.325 kb on - strand, within MIT1002_00503at 548.422 kb on + strand, within MIT1002_00503at 548.428 kb on - strand, within MIT1002_00503at 548.480 kb on + strand, within MIT1002_00503at 548.480 kb on + strand, within MIT1002_00503at 548.530 kb on - strandat 548.569 kb on + strandat 548.601 kb on - strandat 548.601 kb on - strandat 548.651 kb on + strandat 548.707 kb on + strandat 548.717 kb on - strand, within MIT1002_00504at 548.770 kb on - strand, within MIT1002_00504at 548.859 kb on + strand, within MIT1002_00504at 548.859 kb on + strand, within MIT1002_00504at 548.867 kb on - strand, within MIT1002_00504at 548.933 kb on - strand, within MIT1002_00504at 549.018 kb on + strand, within MIT1002_00504at 549.074 kb on + strand, within MIT1002_00504at 549.082 kb on - strand, within MIT1002_00504at 549.120 kb on + strandat 549.143 kb on - strandat 549.269 kb on - strandat 549.275 kb on + strandat 549.275 kb on + strandat 549.275 kb on + strandat 549.275 kb on + strandat 549.275 kb on + strandat 549.275 kb on + strandat 549.283 kb on - strandat 549.283 kb on - strandat 549.283 kb on - strandat 549.283 kb on - strandat 549.367 kb on - strand, within MIT1002_00505at 549.367 kb on - strand, within MIT1002_00505at 549.382 kb on - strand, within MIT1002_00505at 549.382 kb on - strand, within MIT1002_00505at 549.382 kb on - strand, within MIT1002_00505at 549.416 kb on + strand, within MIT1002_00505at 549.451 kb on + strand, within MIT1002_00505at 549.494 kb on + strand, within MIT1002_00505at 549.494 kb on + strand, within MIT1002_00505at 549.502 kb on - strand, within MIT1002_00505at 549.613 kb on - strand, within MIT1002_00505at 549.639 kb on - strand, within MIT1002_00505at 549.644 kb on - strand, within MIT1002_00505

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4
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545,993 + MIT1002_00501 0.85 +1.1
545,998 - MIT1002_00501 0.87 +0.5
546,036 - -0.1
546,106 + +0.4
546,179 + -0.9
546,285 + -0.6
546,286 + +1.0
546,287 + -0.6
546,295 - +1.4
546,295 - +0.5
546,402 - MIT1002_00502 0.29 -1.7
546,417 - MIT1002_00502 0.33 -1.9
546,510 + MIT1002_00502 0.57 +0.1
546,510 - MIT1002_00502 0.57 -0.5
546,523 + MIT1002_00502 0.61 -0.5
546,610 - MIT1002_00502 0.84 -0.3
546,671 + -0.6
546,892 - -1.7
546,903 - -2.1
546,915 + -1.5
546,917 + -3.8
546,932 + -2.8
546,965 + -4.7
547,020 - -7.5
547,071 - -1.8
547,117 - MIT1002_00503 0.10 -2.5
547,129 - MIT1002_00503 0.11 -2.2
547,154 + MIT1002_00503 0.12 -1.1
547,162 - MIT1002_00503 0.13 -3.4
547,162 - MIT1002_00503 0.13 -3.3
547,164 + MIT1002_00503 0.13 -3.5
547,172 - MIT1002_00503 0.13 -5.7
547,172 - MIT1002_00503 0.13 -0.8
547,196 + MIT1002_00503 0.15 -5.9
547,196 - MIT1002_00503 0.15 -4.6
547,231 - MIT1002_00503 0.17 -5.1
547,297 + MIT1002_00503 0.21 -2.7
547,305 + MIT1002_00503 0.21 -3.9
547,313 - MIT1002_00503 0.21 -6.1
547,358 - MIT1002_00503 0.24 -2.8
547,483 + MIT1002_00503 0.31 -3.8
547,518 + MIT1002_00503 0.33 -2.1
547,552 + MIT1002_00503 0.35 -2.6
547,552 + MIT1002_00503 0.35 -2.6
547,552 + MIT1002_00503 0.35 -2.6
547,560 - MIT1002_00503 0.36 -2.6
547,566 + MIT1002_00503 0.36 -4.0
547,569 - MIT1002_00503 0.36 -0.8
547,576 + MIT1002_00503 0.37 -5.1
547,579 - MIT1002_00503 0.37 -3.4
547,584 - MIT1002_00503 0.37 -3.0
547,639 + MIT1002_00503 0.40 -4.1
547,649 + MIT1002_00503 0.41 -8.1
547,723 + MIT1002_00503 0.45 -4.3
547,739 - MIT1002_00503 0.46 -2.1
547,741 + MIT1002_00503 0.46 -4.1
547,751 + MIT1002_00503 0.47 -2.1
547,822 + MIT1002_00503 0.51 -1.8
547,861 - MIT1002_00503 0.53 -3.1
548,027 - MIT1002_00503 0.63 -4.1
548,052 + MIT1002_00503 0.64 -4.5
548,064 - MIT1002_00503 0.65 -3.4
548,083 - MIT1002_00503 0.66 -4.4
548,155 + MIT1002_00503 0.70 -2.5
548,163 - MIT1002_00503 0.71 -1.9
548,163 - MIT1002_00503 0.71 -2.7
548,174 - MIT1002_00503 0.72 -1.4
548,190 + MIT1002_00503 0.72 -2.4
548,258 + MIT1002_00503 0.76 -2.2
548,258 + MIT1002_00503 0.76 -4.0
548,258 + MIT1002_00503 0.76 -3.0
548,258 + MIT1002_00503 0.76 -2.5
548,258 + MIT1002_00503 0.76 +0.0
548,266 - MIT1002_00503 0.77 -2.2
548,266 - MIT1002_00503 0.77 -1.8
548,266 - MIT1002_00503 0.77 -0.3
548,266 - MIT1002_00503 0.77 -0.6
548,266 - MIT1002_00503 0.77 -3.2
548,290 - MIT1002_00503 0.78 -2.1
548,317 + MIT1002_00503 0.80 -4.0
548,325 - MIT1002_00503 0.80 -1.7
548,422 + MIT1002_00503 0.86 -4.9
548,428 - MIT1002_00503 0.86 -3.9
548,480 + MIT1002_00503 0.89 -6.1
548,480 + MIT1002_00503 0.89 -3.3
548,530 - -3.6
548,569 + -3.7
548,601 - -4.3
548,601 - -6.3
548,651 + -4.4
548,707 + -5.3
548,717 - MIT1002_00504 0.11 -10.3
548,770 - MIT1002_00504 0.22 -4.2
548,859 + MIT1002_00504 0.40 -2.9
548,859 + MIT1002_00504 0.40 -5.0
548,867 - MIT1002_00504 0.41 -2.1
548,933 - MIT1002_00504 0.54 -3.5
549,018 + MIT1002_00504 0.71 -3.6
549,074 + MIT1002_00504 0.83 -1.6
549,082 - MIT1002_00504 0.84 -3.4
549,120 + +0.5
549,143 - -2.9
549,269 - -0.6
549,275 + -1.0
549,275 + -1.0
549,275 + +1.0
549,275 + -0.6
549,275 + +0.3
549,275 + +0.7
549,283 - +0.1
549,283 - -2.4
549,283 - -0.4
549,283 - +1.3
549,367 - MIT1002_00505 0.12 +0.4
549,367 - MIT1002_00505 0.12 +1.8
549,382 - MIT1002_00505 0.13 -1.2
549,382 - MIT1002_00505 0.13 -0.6
549,382 - MIT1002_00505 0.13 +2.0
549,416 + MIT1002_00505 0.17 -1.2
549,451 + MIT1002_00505 0.20 -0.7
549,494 + MIT1002_00505 0.24 +0.2
549,494 + MIT1002_00505 0.24 -0.1
549,502 - MIT1002_00505 0.25 -0.8
549,613 - MIT1002_00505 0.35 +1.1
549,639 - MIT1002_00505 0.38 -1.1
549,644 - MIT1002_00505 0.38 +0.1

Or see this region's nucleotide sequence