Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00485 and MIT1002_00486 are separated by 10 nucleotides MIT1002_00486 and MIT1002_00487 are separated by 62 nucleotides MIT1002_00487 and MIT1002_00488 are separated by 12 nucleotides
MIT1002_00485: MIT1002_00485 - Glycerol-3-phosphate dehydrogenase [NAD(P)+], at 530,457 to 531,488
_00485
MIT1002_00486: MIT1002_00486 - Protein-export protein SecB, at 531,499 to 532,008
_00486
MIT1002_00487: MIT1002_00487 - Glutaredoxin-3, at 532,071 to 532,331
_00487
MIT1002_00488: MIT1002_00488 - Thiosulfate sulfurtransferase GlpE, at 532,344 to 532,769
_00488
Position (kb) 531
532
533 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3 at 530.523 kb on + strand at 530.531 kb on - strand at 530.541 kb on - strand at 530.541 kb on - strand at 530.613 kb on - strand, within MIT1002_00485 at 530.623 kb on + strand, within MIT1002_00485 at 530.785 kb on + strand, within MIT1002_00485 at 530.795 kb on - strand, within MIT1002_00485 at 530.853 kb on + strand, within MIT1002_00485 at 530.861 kb on - strand, within MIT1002_00485 at 530.941 kb on - strand, within MIT1002_00485 at 530.950 kb on - strand, within MIT1002_00485 at 530.950 kb on - strand, within MIT1002_00485 at 530.960 kb on - strand, within MIT1002_00485 at 531.015 kb on + strand, within MIT1002_00485 at 531.015 kb on + strand, within MIT1002_00485 at 531.023 kb on - strand, within MIT1002_00485 at 531.023 kb on - strand, within MIT1002_00485 at 531.097 kb on + strand, within MIT1002_00485 at 531.166 kb on + strand, within MIT1002_00485 at 531.179 kb on + strand, within MIT1002_00485 at 531.197 kb on - strand, within MIT1002_00485 at 531.219 kb on - strand, within MIT1002_00485 at 531.283 kb on - strand, within MIT1002_00485 at 531.336 kb on + strand, within MIT1002_00485 at 531.364 kb on + strand, within MIT1002_00485 at 531.374 kb on + strand, within MIT1002_00485 at 531.382 kb on - strand, within MIT1002_00485 at 531.387 kb on - strand at 531.419 kb on + strand at 531.481 kb on + strand at 531.489 kb on - strand at 531.518 kb on + strand at 531.598 kb on - strand, within MIT1002_00486 at 532.061 kb on - strand at 532.109 kb on - strand, within MIT1002_00487 at 532.222 kb on - strand, within MIT1002_00487 at 532.222 kb on - strand, within MIT1002_00487 at 532.222 kb on - strand, within MIT1002_00487 at 532.222 kb on - strand, within MIT1002_00487 at 532.324 kb on - strand at 532.369 kb on - strand at 532.369 kb on - strand at 532.461 kb on - strand, within MIT1002_00488 at 532.497 kb on + strand, within MIT1002_00488 at 532.537 kb on + strand, within MIT1002_00488 at 532.570 kb on + strand, within MIT1002_00488 at 532.570 kb on + strand, within MIT1002_00488 at 532.570 kb on + strand, within MIT1002_00488 at 532.570 kb on + strand, within MIT1002_00488 at 532.655 kb on - strand, within MIT1002_00488 at 532.772 kb on + strand at 532.772 kb on + strand at 532.773 kb on + strand at 532.773 kb on + strand at 532.773 kb on + strand at 532.773 kb on + strand at 532.773 kb on + strand at 532.780 kb on - strand at 532.781 kb on - strand at 532.781 kb on - strand at 532.781 kb on - strand at 532.781 kb on - strand at 532.801 kb on - strand at 532.803 kb on + strand at 532.850 kb on - strand at 532.922 kb on + strand at 532.922 kb on + strand at 532.922 kb on + strand at 532.922 kb on + strand at 532.922 kb on + strand at 532.930 kb on - strand at 532.944 kb on - strand at 532.981 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4 remove 530,523 + -3.3 530,531 - -3.0 530,541 - -2.6 530,541 - -1.2 530,613 - MIT1002_00485 0.15 +0.0 530,623 + MIT1002_00485 0.16 -3.5 530,785 + MIT1002_00485 0.32 -2.1 530,795 - MIT1002_00485 0.33 -4.1 530,853 + MIT1002_00485 0.38 +0.0 530,861 - MIT1002_00485 0.39 -4.6 530,941 - MIT1002_00485 0.47 -3.5 530,950 - MIT1002_00485 0.48 -3.6 530,950 - MIT1002_00485 0.48 -4.8 530,960 - MIT1002_00485 0.49 -2.1 531,015 + MIT1002_00485 0.54 -3.6 531,015 + MIT1002_00485 0.54 -4.4 531,023 - MIT1002_00485 0.55 -3.9 531,023 - MIT1002_00485 0.55 -2.9 531,097 + MIT1002_00485 0.62 -4.7 531,166 + MIT1002_00485 0.69 -2.1 531,179 + MIT1002_00485 0.70 -3.7 531,197 - MIT1002_00485 0.72 -4.0 531,219 - MIT1002_00485 0.74 -1.5 531,283 - MIT1002_00485 0.80 -2.6 531,336 + MIT1002_00485 0.85 -2.7 531,364 + MIT1002_00485 0.88 -1.9 531,374 + MIT1002_00485 0.89 -3.1 531,382 - MIT1002_00485 0.90 -6.7 531,387 - -4.5 531,419 + -3.0 531,481 + -4.4 531,489 - -4.2 531,518 + -3.3 531,598 - MIT1002_00486 0.19 -3.5 532,061 - -0.7 532,109 - MIT1002_00487 0.15 +0.0 532,222 - MIT1002_00487 0.58 -0.9 532,222 - MIT1002_00487 0.58 +0.3 532,222 - MIT1002_00487 0.58 -0.8 532,222 - MIT1002_00487 0.58 -0.7 532,324 - -1.0 532,369 - -0.8 532,369 - -1.8 532,461 - MIT1002_00488 0.27 +0.6 532,497 + MIT1002_00488 0.36 +1.5 532,537 + MIT1002_00488 0.45 -0.7 532,570 + MIT1002_00488 0.53 -2.2 532,570 + MIT1002_00488 0.53 -2.7 532,570 + MIT1002_00488 0.53 +0.4 532,570 + MIT1002_00488 0.53 +0.5 532,655 - MIT1002_00488 0.73 +1.0 532,772 + -1.9 532,772 + -0.3 532,773 + -0.1 532,773 + -2.2 532,773 + -0.8 532,773 + +0.0 532,773 + -2.9 532,780 - -0.3 532,781 - +1.1 532,781 - -3.4 532,781 - -1.6 532,781 - -0.4 532,801 - +1.0 532,803 + -1.5 532,850 - -0.1 532,922 + +0.2 532,922 + +0.1 532,922 + -0.7 532,922 + -0.3 532,922 + -0.8 532,930 - +0.4 532,944 - +3.1 532,981 + -1.3
Or see this region's nucleotide sequence