Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00401 and MIT1002_00402 are separated by 253 nucleotides MIT1002_00402 and MIT1002_00403 are separated by 148 nucleotides MIT1002_00403 and MIT1002_00404 are separated by 111 nucleotides
MIT1002_00401: MIT1002_00401 - Peptidyl-dipeptidase dcp, at 430,094 to 432,283
_00401
MIT1002_00402: MIT1002_00402 - Bacterial inner membrane protein, at 432,537 to 433,055
_00402
MIT1002_00403: MIT1002_00403 - hypothetical protein, at 433,204 to 433,644
_00403
MIT1002_00404: MIT1002_00404 - Formyltetrahydrofolate deformylase, at 433,756 to 434,610
_00404
Position (kb) 432
433
434 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 431.551 kb on - strand, within MIT1002_00401 at 431.723 kb on - strand, within MIT1002_00401 at 431.735 kb on + strand, within MIT1002_00401 at 431.749 kb on + strand, within MIT1002_00401 at 431.772 kb on - strand, within MIT1002_00401 at 431.805 kb on + strand, within MIT1002_00401 at 431.904 kb on - strand, within MIT1002_00401 at 431.996 kb on + strand, within MIT1002_00401 at 432.023 kb on + strand, within MIT1002_00401 at 432.123 kb on + strand at 432.123 kb on + strand at 432.139 kb on - strand at 432.187 kb on + strand at 432.187 kb on - strand at 432.208 kb on - strand at 432.222 kb on + strand at 432.298 kb on + strand at 432.298 kb on + strand at 432.306 kb on - strand at 432.418 kb on - strand at 432.447 kb on + strand at 432.447 kb on + strand at 432.447 kb on + strand at 432.447 kb on + strand at 432.447 kb on + strand at 432.447 kb on + strand at 432.455 kb on - strand at 432.455 kb on - strand at 432.455 kb on - strand at 432.455 kb on - strand at 432.500 kb on - strand at 432.500 kb on - strand at 432.519 kb on - strand at 432.605 kb on + strand, within MIT1002_00402 at 432.654 kb on + strand, within MIT1002_00402 at 432.679 kb on - strand, within MIT1002_00402 at 432.680 kb on - strand, within MIT1002_00402 at 432.705 kb on + strand, within MIT1002_00402 at 432.710 kb on + strand, within MIT1002_00402 at 432.876 kb on - strand, within MIT1002_00402 at 432.905 kb on - strand, within MIT1002_00402 at 432.905 kb on - strand, within MIT1002_00402 at 432.906 kb on - strand, within MIT1002_00402 at 432.906 kb on - strand, within MIT1002_00402 at 432.971 kb on + strand, within MIT1002_00402 at 433.022 kb on + strand at 433.088 kb on + strand at 433.101 kb on - strand at 433.103 kb on + strand at 433.133 kb on - strand at 433.170 kb on + strand at 433.212 kb on - strand at 433.241 kb on - strand at 433.251 kb on - strand, within MIT1002_00403 at 433.312 kb on + strand, within MIT1002_00403 at 433.312 kb on + strand, within MIT1002_00403 at 433.312 kb on + strand, within MIT1002_00403 at 433.312 kb on + strand, within MIT1002_00403 at 433.312 kb on + strand, within MIT1002_00403 at 433.312 kb on + strand, within MIT1002_00403 at 433.312 kb on + strand, within MIT1002_00403 at 433.312 kb on + strand, within MIT1002_00403 at 433.312 kb on + strand, within MIT1002_00403 at 433.312 kb on + strand, within MIT1002_00403 at 433.312 kb on + strand, within MIT1002_00403 at 433.320 kb on - strand, within MIT1002_00403 at 433.320 kb on - strand, within MIT1002_00403 at 433.320 kb on - strand, within MIT1002_00403 at 433.320 kb on - strand, within MIT1002_00403 at 433.320 kb on - strand, within MIT1002_00403 at 433.320 kb on - strand, within MIT1002_00403 at 433.320 kb on - strand, within MIT1002_00403 at 433.320 kb on - strand, within MIT1002_00403 at 433.320 kb on - strand, within MIT1002_00403 at 433.320 kb on - strand, within MIT1002_00403 at 433.320 kb on - strand, within MIT1002_00403 at 433.322 kb on + strand, within MIT1002_00403 at 433.322 kb on + strand, within MIT1002_00403 at 433.322 kb on + strand, within MIT1002_00403 at 433.322 kb on + strand, within MIT1002_00403 at 433.322 kb on + strand, within MIT1002_00403 at 433.322 kb on + strand, within MIT1002_00403 at 433.322 kb on + strand, within MIT1002_00403 at 433.322 kb on + strand, within MIT1002_00403 at 433.322 kb on + strand, within MIT1002_00403 at 433.322 kb on + strand, within MIT1002_00403 at 433.322 kb on + strand, within MIT1002_00403 at 433.322 kb on + strand, within MIT1002_00403 at 433.322 kb on + strand, within MIT1002_00403 at 433.322 kb on + strand, within MIT1002_00403 at 433.322 kb on + strand, within MIT1002_00403 at 433.322 kb on + strand, within MIT1002_00403 at 433.322 kb on + strand, within MIT1002_00403 at 433.322 kb on + strand, within MIT1002_00403 at 433.322 kb on + strand, within MIT1002_00403 at 433.322 kb on + strand, within MIT1002_00403 at 433.322 kb on + strand, within MIT1002_00403 at 433.329 kb on + strand, within MIT1002_00403 at 433.329 kb on + strand, within MIT1002_00403 at 433.330 kb on - strand, within MIT1002_00403 at 433.330 kb on - strand, within MIT1002_00403 at 433.330 kb on - strand, within MIT1002_00403 at 433.330 kb on - strand, within MIT1002_00403 at 433.330 kb on - strand, within MIT1002_00403 at 433.330 kb on - strand, within MIT1002_00403 at 433.330 kb on - strand, within MIT1002_00403 at 433.330 kb on - strand, within MIT1002_00403 at 433.330 kb on - strand, within MIT1002_00403 at 433.330 kb on - strand, within MIT1002_00403 at 433.330 kb on - strand, within MIT1002_00403 at 433.330 kb on - strand, within MIT1002_00403 at 433.330 kb on - strand, within MIT1002_00403 at 433.330 kb on - strand, within MIT1002_00403 at 433.330 kb on - strand, within MIT1002_00403 at 433.330 kb on - strand, within MIT1002_00403 at 433.330 kb on - strand, within MIT1002_00403 at 433.330 kb on - strand, within MIT1002_00403 at 433.330 kb on - strand, within MIT1002_00403 at 433.330 kb on - strand, within MIT1002_00403 at 433.330 kb on - strand, within MIT1002_00403 at 433.330 kb on - strand, within MIT1002_00403 at 433.330 kb on - strand, within MIT1002_00403 at 433.330 kb on - strand, within MIT1002_00403 at 433.457 kb on + strand, within MIT1002_00403 at 433.457 kb on + strand, within MIT1002_00403 at 433.465 kb on - strand, within MIT1002_00403 at 433.465 kb on - strand, within MIT1002_00403 at 433.478 kb on - strand, within MIT1002_00403 at 433.478 kb on - strand, within MIT1002_00403 at 433.508 kb on + strand, within MIT1002_00403 at 433.536 kb on + strand, within MIT1002_00403 at 433.536 kb on + strand, within MIT1002_00403 at 433.537 kb on + strand, within MIT1002_00403 at 433.545 kb on - strand, within MIT1002_00403 at 433.608 kb on - strand at 433.623 kb on - strand at 433.808 kb on - strand at 433.815 kb on - strand at 433.863 kb on + strand, within MIT1002_00404 at 433.877 kb on + strand, within MIT1002_00404 at 433.885 kb on - strand, within MIT1002_00404 at 433.896 kb on + strand, within MIT1002_00404 at 433.904 kb on - strand, within MIT1002_00404 at 433.909 kb on - strand, within MIT1002_00404 at 433.913 kb on + strand, within MIT1002_00404 at 433.968 kb on + strand, within MIT1002_00404 at 433.981 kb on + strand, within MIT1002_00404 at 434.001 kb on + strand, within MIT1002_00404 at 434.008 kb on - strand, within MIT1002_00404 at 434.047 kb on + strand, within MIT1002_00404
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4 remove 431,551 - MIT1002_00401 0.67 -0.3 431,723 - MIT1002_00401 0.74 +1.4 431,735 + MIT1002_00401 0.75 +0.0 431,749 + MIT1002_00401 0.76 +1.0 431,772 - MIT1002_00401 0.77 -0.5 431,805 + MIT1002_00401 0.78 -1.1 431,904 - MIT1002_00401 0.83 -1.3 431,996 + MIT1002_00401 0.87 -1.7 432,023 + MIT1002_00401 0.88 -0.3 432,123 + -1.6 432,123 + +0.3 432,139 - -0.9 432,187 + -0.1 432,187 - -0.3 432,208 - -0.8 432,222 + +0.1 432,298 + -0.4 432,298 + +0.2 432,306 - +0.4 432,418 - -2.5 432,447 + +1.0 432,447 + -1.4 432,447 + -0.9 432,447 + -1.9 432,447 + -0.8 432,447 + -0.3 432,455 - -0.7 432,455 - -1.8 432,455 - +0.6 432,455 - +0.9 432,500 - -0.6 432,500 - +1.6 432,519 - +0.0 432,605 + MIT1002_00402 0.13 +0.2 432,654 + MIT1002_00402 0.23 -0.1 432,679 - MIT1002_00402 0.27 +0.3 432,680 - MIT1002_00402 0.28 -0.4 432,705 + MIT1002_00402 0.32 +2.0 432,710 + MIT1002_00402 0.33 -0.0 432,876 - MIT1002_00402 0.65 +1.9 432,905 - MIT1002_00402 0.71 +0.0 432,905 - MIT1002_00402 0.71 +0.4 432,906 - MIT1002_00402 0.71 +0.7 432,906 - MIT1002_00402 0.71 -1.1 432,971 + MIT1002_00402 0.84 +0.7 433,022 + +0.2 433,088 + -0.1 433,101 - +1.0 433,103 + -1.0 433,133 - +0.8 433,170 + -1.9 433,212 - +0.9 433,241 - +2.4 433,251 - MIT1002_00403 0.11 +0.4 433,312 + MIT1002_00403 0.24 +1.5 433,312 + MIT1002_00403 0.24 +0.5 433,312 + MIT1002_00403 0.24 +0.1 433,312 + MIT1002_00403 0.24 -1.4 433,312 + MIT1002_00403 0.24 -0.1 433,312 + MIT1002_00403 0.24 +0.9 433,312 + MIT1002_00403 0.24 -1.8 433,312 + MIT1002_00403 0.24 +0.3 433,312 + MIT1002_00403 0.24 +0.1 433,312 + MIT1002_00403 0.24 +0.9 433,312 + MIT1002_00403 0.24 +0.6 433,320 - MIT1002_00403 0.26 -1.4 433,320 - MIT1002_00403 0.26 -0.1 433,320 - MIT1002_00403 0.26 +2.5 433,320 - MIT1002_00403 0.26 +0.2 433,320 - MIT1002_00403 0.26 +0.0 433,320 - MIT1002_00403 0.26 -0.1 433,320 - MIT1002_00403 0.26 +0.2 433,320 - MIT1002_00403 0.26 +0.1 433,320 - MIT1002_00403 0.26 +0.2 433,320 - MIT1002_00403 0.26 -1.0 433,320 - MIT1002_00403 0.26 -1.2 433,322 + MIT1002_00403 0.27 +0.2 433,322 + MIT1002_00403 0.27 +2.0 433,322 + MIT1002_00403 0.27 +2.0 433,322 + MIT1002_00403 0.27 +0.4 433,322 + MIT1002_00403 0.27 +0.0 433,322 + MIT1002_00403 0.27 +1.1 433,322 + MIT1002_00403 0.27 +1.8 433,322 + MIT1002_00403 0.27 -0.7 433,322 + MIT1002_00403 0.27 +1.5 433,322 + MIT1002_00403 0.27 +2.2 433,322 + MIT1002_00403 0.27 +1.0 433,322 + MIT1002_00403 0.27 -1.9 433,322 + MIT1002_00403 0.27 -0.2 433,322 + MIT1002_00403 0.27 +0.3 433,322 + MIT1002_00403 0.27 +0.4 433,322 + MIT1002_00403 0.27 +0.7 433,322 + MIT1002_00403 0.27 -0.6 433,322 + MIT1002_00403 0.27 -0.3 433,322 + MIT1002_00403 0.27 +1.3 433,322 + MIT1002_00403 0.27 +1.2 433,322 + MIT1002_00403 0.27 -0.2 433,329 + MIT1002_00403 0.28 -1.0 433,329 + MIT1002_00403 0.28 -3.1 433,330 - MIT1002_00403 0.29 +0.9 433,330 - MIT1002_00403 0.29 +1.0 433,330 - MIT1002_00403 0.29 +1.3 433,330 - MIT1002_00403 0.29 +0.7 433,330 - MIT1002_00403 0.29 -0.6 433,330 - MIT1002_00403 0.29 -0.1 433,330 - MIT1002_00403 0.29 -0.7 433,330 - MIT1002_00403 0.29 +1.2 433,330 - MIT1002_00403 0.29 -0.7 433,330 - MIT1002_00403 0.29 +0.6 433,330 - MIT1002_00403 0.29 -0.5 433,330 - MIT1002_00403 0.29 -1.9 433,330 - MIT1002_00403 0.29 -2.1 433,330 - MIT1002_00403 0.29 -0.6 433,330 - MIT1002_00403 0.29 -2.4 433,330 - MIT1002_00403 0.29 -0.5 433,330 - MIT1002_00403 0.29 +0.4 433,330 - MIT1002_00403 0.29 +0.8 433,330 - MIT1002_00403 0.29 -1.7 433,330 - MIT1002_00403 0.29 +0.2 433,330 - MIT1002_00403 0.29 +0.7 433,330 - MIT1002_00403 0.29 +1.4 433,330 - MIT1002_00403 0.29 -1.8 433,330 - MIT1002_00403 0.29 -2.4 433,457 + MIT1002_00403 0.57 +0.5 433,457 + MIT1002_00403 0.57 +1.9 433,465 - MIT1002_00403 0.59 +1.6 433,465 - MIT1002_00403 0.59 -0.4 433,478 - MIT1002_00403 0.62 -0.6 433,478 - MIT1002_00403 0.62 +1.7 433,508 + MIT1002_00403 0.69 +0.4 433,536 + MIT1002_00403 0.75 -1.3 433,536 + MIT1002_00403 0.75 -0.1 433,537 + MIT1002_00403 0.76 +1.0 433,545 - MIT1002_00403 0.77 +0.3 433,608 - -0.8 433,623 - +0.7 433,808 - -0.1 433,815 - +0.2 433,863 + MIT1002_00404 0.13 +0.5 433,877 + MIT1002_00404 0.14 -0.2 433,885 - MIT1002_00404 0.15 +0.1 433,896 + MIT1002_00404 0.16 -0.8 433,904 - MIT1002_00404 0.17 -1.0 433,909 - MIT1002_00404 0.18 +1.5 433,913 + MIT1002_00404 0.18 -0.5 433,968 + MIT1002_00404 0.25 -0.0 433,981 + MIT1002_00404 0.26 -1.5 434,001 + MIT1002_00404 0.29 +0.4 434,008 - MIT1002_00404 0.29 +0.6 434,047 + MIT1002_00404 0.34 +0.4
Or see this region's nucleotide sequence