Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00375 and MIT1002_00376 are separated by 138 nucleotides MIT1002_00376 and MIT1002_00377 are separated by 455 nucleotides MIT1002_00377 and MIT1002_00378 are separated by 66 nucleotides MIT1002_00378 and MIT1002_00379 are separated by 177 nucleotides
MIT1002_00375: MIT1002_00375 - 23S ribosomal RNA, at 403,891 to 406,764
_00375
MIT1002_00376: MIT1002_00376 - 5S ribosomal RNA, at 406,903 to 407,017
_00376
MIT1002_00377: MIT1002_00377 - Branched-chain-amino-acid aminotransferase 2, at 407,473 to 408,474
_00377
MIT1002_00378: MIT1002_00378 - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase, at 408,541 to 409,287
_00378
MIT1002_00379: MIT1002_00379 - hypothetical protein, at 409,465 to 409,926
_00379
Position (kb) 407
408
409 Strain fitness (log2 ratio) -8
-7
-6
-5
-4
-3
-2
-1
0
1 at 407.087 kb on + strand at 407.139 kb on + strand at 407.167 kb on + strand at 407.175 kb on - strand at 407.175 kb on - strand at 407.183 kb on - strand at 407.196 kb on + strand at 407.222 kb on + strand at 407.458 kb on + strand at 407.574 kb on + strand, within MIT1002_00377 at 407.588 kb on - strand, within MIT1002_00377 at 407.703 kb on - strand, within MIT1002_00377 at 407.708 kb on - strand, within MIT1002_00377 at 407.866 kb on - strand, within MIT1002_00377 at 407.962 kb on + strand, within MIT1002_00377 at 407.970 kb on - strand, within MIT1002_00377 at 408.015 kb on - strand, within MIT1002_00377 at 408.176 kb on + strand, within MIT1002_00377 at 408.183 kb on - strand, within MIT1002_00377 at 408.218 kb on + strand, within MIT1002_00377 at 408.228 kb on + strand, within MIT1002_00377 at 408.256 kb on + strand, within MIT1002_00377 at 408.269 kb on + strand, within MIT1002_00377 at 408.269 kb on + strand, within MIT1002_00377 at 408.305 kb on - strand, within MIT1002_00377 at 408.305 kb on - strand, within MIT1002_00377 at 408.434 kb on - strand at 408.442 kb on + strand at 408.554 kb on - strand at 409.405 kb on + strand at 409.428 kb on + strand at 409.436 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4 remove 407,087 + +1.4 407,139 + +0.8 407,167 + +0.1 407,175 - +0.6 407,175 - +0.4 407,183 - +0.0 407,196 + -0.1 407,222 + -1.7 407,458 + +1.5 407,574 + MIT1002_00377 0.10 -1.4 407,588 - MIT1002_00377 0.11 -5.5 407,703 - MIT1002_00377 0.23 -6.0 407,708 - MIT1002_00377 0.23 -5.1 407,866 - MIT1002_00377 0.39 -3.0 407,962 + MIT1002_00377 0.49 -7.7 407,970 - MIT1002_00377 0.50 -2.1 408,015 - MIT1002_00377 0.54 -2.9 408,176 + MIT1002_00377 0.70 -2.1 408,183 - MIT1002_00377 0.71 -6.3 408,218 + MIT1002_00377 0.74 -2.8 408,228 + MIT1002_00377 0.75 -3.2 408,256 + MIT1002_00377 0.78 -2.7 408,269 + MIT1002_00377 0.79 -2.7 408,269 + MIT1002_00377 0.79 -8.0 408,305 - MIT1002_00377 0.83 -3.3 408,305 - MIT1002_00377 0.83 -1.0 408,434 - -3.8 408,442 + -2.4 408,554 - -1.1 409,405 + -0.1 409,428 + +1.0 409,436 - -1.3
Or see this region's nucleotide sequence