Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00289 and MIT1002_00290 are separated by 75 nucleotides MIT1002_00290 and MIT1002_00291 are separated by 341 nucleotides MIT1002_00291 and MIT1002_00292 are separated by 473 nucleotides
MIT1002_00289: MIT1002_00289 - hypothetical protein, at 313,106 to 313,474
_00289
MIT1002_00290: MIT1002_00290 - hypothetical protein, at 313,550 to 313,732
_00290
MIT1002_00291: MIT1002_00291 - Integrase core domain protein, at 314,074 to 314,535
_00291
MIT1002_00292: MIT1002_00292 - hypothetical protein, at 315,009 to 315,551
_00292
Position (kb) 314
315 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 313.135 kb on - strand at 313.208 kb on - strand, within MIT1002_00289 at 313.278 kb on - strand, within MIT1002_00289 at 313.284 kb on + strand, within MIT1002_00289 at 313.284 kb on + strand, within MIT1002_00289 at 313.292 kb on - strand, within MIT1002_00289 at 313.292 kb on - strand, within MIT1002_00289 at 313.327 kb on + strand, within MIT1002_00289 at 313.428 kb on - strand, within MIT1002_00289 at 313.429 kb on - strand, within MIT1002_00289 at 313.449 kb on + strand at 313.451 kb on - strand at 313.462 kb on - strand at 313.496 kb on + strand at 313.496 kb on + strand at 313.540 kb on + strand at 313.540 kb on + strand at 313.540 kb on + strand at 313.545 kb on + strand at 313.545 kb on + strand at 313.548 kb on + strand at 313.548 kb on - strand at 313.548 kb on - strand at 313.550 kb on + strand at 313.558 kb on - strand at 313.578 kb on + strand, within MIT1002_00290 at 313.578 kb on + strand, within MIT1002_00290 at 313.578 kb on + strand, within MIT1002_00290 at 313.612 kb on - strand, within MIT1002_00290 at 313.620 kb on - strand, within MIT1002_00290 at 313.651 kb on - strand, within MIT1002_00290 at 313.735 kb on - strand at 313.744 kb on + strand at 313.752 kb on - strand at 313.803 kb on + strand at 313.808 kb on + strand at 313.819 kb on - strand at 313.819 kb on - strand at 313.892 kb on - strand at 313.903 kb on + strand at 313.958 kb on + strand at 313.958 kb on + strand at 314.077 kb on + strand at 314.230 kb on - strand, within MIT1002_00291 at 314.255 kb on + strand, within MIT1002_00291 at 314.255 kb on + strand, within MIT1002_00291 at 314.255 kb on + strand, within MIT1002_00291 at 314.262 kb on - strand, within MIT1002_00291 at 314.263 kb on - strand, within MIT1002_00291 at 314.263 kb on - strand, within MIT1002_00291 at 314.275 kb on - strand, within MIT1002_00291 at 314.345 kb on + strand, within MIT1002_00291 at 314.449 kb on + strand, within MIT1002_00291 at 314.472 kb on + strand, within MIT1002_00291 at 314.472 kb on + strand, within MIT1002_00291 at 314.472 kb on + strand, within MIT1002_00291 at 314.480 kb on - strand, within MIT1002_00291 at 314.480 kb on - strand, within MIT1002_00291 at 314.480 kb on - strand, within MIT1002_00291 at 314.482 kb on + strand, within MIT1002_00291 at 314.482 kb on - strand, within MIT1002_00291 at 314.548 kb on + strand at 314.558 kb on + strand at 314.561 kb on - strand at 314.566 kb on - strand at 314.626 kb on - strand at 314.669 kb on - strand at 314.774 kb on + strand at 314.774 kb on + strand at 314.780 kb on - strand at 314.782 kb on - strand at 314.782 kb on - strand at 314.782 kb on - strand at 314.782 kb on - strand at 314.782 kb on - strand at 314.804 kb on - strand at 314.847 kb on - strand at 314.847 kb on - strand at 314.852 kb on + strand at 314.852 kb on + strand at 314.852 kb on + strand at 314.852 kb on + strand at 314.852 kb on + strand at 314.852 kb on + strand at 314.852 kb on + strand at 314.852 kb on + strand at 314.852 kb on + strand at 314.855 kb on - strand at 314.857 kb on + strand at 314.857 kb on + strand at 314.857 kb on + strand at 314.860 kb on - strand at 314.860 kb on - strand at 314.860 kb on - strand at 314.860 kb on - strand at 314.860 kb on - strand at 314.862 kb on + strand at 314.862 kb on + strand at 314.862 kb on + strand at 314.862 kb on + strand at 314.862 kb on + strand at 314.862 kb on + strand at 314.862 kb on + strand at 314.862 kb on + strand at 314.862 kb on + strand at 314.862 kb on + strand at 314.862 kb on + strand at 314.862 kb on + strand at 314.862 kb on + strand at 314.862 kb on + strand at 314.865 kb on - strand at 314.867 kb on + strand at 314.870 kb on - strand at 314.870 kb on - strand at 314.870 kb on - strand at 314.870 kb on - strand at 314.870 kb on - strand at 314.870 kb on - strand at 314.870 kb on - strand at 314.870 kb on - strand at 314.870 kb on - strand at 314.878 kb on + strand at 314.881 kb on - strand at 314.886 kb on - strand at 314.886 kb on - strand at 314.886 kb on - strand at 314.886 kb on - strand at 314.886 kb on - strand at 314.908 kb on + strand at 314.909 kb on + strand at 314.910 kb on + strand at 314.910 kb on + strand at 314.910 kb on + strand at 314.910 kb on + strand at 314.910 kb on + strand at 314.910 kb on + strand at 314.910 kb on + strand at 314.917 kb on + strand at 314.918 kb on - strand at 314.918 kb on - strand at 314.918 kb on - strand at 314.918 kb on - strand at 314.918 kb on - strand at 314.976 kb on + strand at 314.986 kb on + strand at 314.988 kb on + strand at 314.990 kb on + strand at 314.990 kb on + strand at 314.990 kb on + strand at 314.996 kb on + strand at 314.996 kb on - strand at 314.998 kb on + strand at 314.998 kb on - strand at 314.998 kb on - strand at 315.059 kb on + strand at 315.068 kb on - strand, within MIT1002_00292 at 315.099 kb on - strand, within MIT1002_00292 at 315.153 kb on + strand, within MIT1002_00292 at 315.165 kb on + strand, within MIT1002_00292 at 315.184 kb on - strand, within MIT1002_00292 at 315.261 kb on + strand, within MIT1002_00292 at 315.264 kb on - strand, within MIT1002_00292 at 315.271 kb on + strand, within MIT1002_00292 at 315.271 kb on + strand, within MIT1002_00292 at 315.277 kb on + strand, within MIT1002_00292 at 315.278 kb on + strand, within MIT1002_00292 at 315.278 kb on + strand, within MIT1002_00292 at 315.278 kb on + strand, within MIT1002_00292 at 315.284 kb on - strand, within MIT1002_00292 at 315.285 kb on - strand, within MIT1002_00292 at 315.285 kb on - strand, within MIT1002_00292 at 315.285 kb on - strand, within MIT1002_00292 at 315.286 kb on - strand, within MIT1002_00292 at 315.286 kb on - strand, within MIT1002_00292 at 315.288 kb on + strand, within MIT1002_00292 at 315.300 kb on + strand, within MIT1002_00292 at 315.302 kb on + strand, within MIT1002_00292 at 315.356 kb on + strand, within MIT1002_00292 at 315.356 kb on + strand, within MIT1002_00292 at 315.356 kb on + strand, within MIT1002_00292 at 315.364 kb on - strand, within MIT1002_00292 at 315.364 kb on - strand, within MIT1002_00292 at 315.364 kb on - strand, within MIT1002_00292 at 315.364 kb on - strand, within MIT1002_00292 at 315.364 kb on - strand, within MIT1002_00292 at 315.378 kb on + strand, within MIT1002_00292 at 315.378 kb on + strand, within MIT1002_00292 at 315.378 kb on + strand, within MIT1002_00292 at 315.378 kb on + strand, within MIT1002_00292 at 315.378 kb on + strand, within MIT1002_00292 at 315.378 kb on + strand, within MIT1002_00292 at 315.386 kb on - strand, within MIT1002_00292 at 315.386 kb on - strand, within MIT1002_00292 at 315.386 kb on - strand, within MIT1002_00292 at 315.386 kb on - strand, within MIT1002_00292 at 315.386 kb on - strand, within MIT1002_00292 at 315.386 kb on - strand, within MIT1002_00292 at 315.388 kb on - strand, within MIT1002_00292 at 315.393 kb on + strand, within MIT1002_00292 at 315.393 kb on + strand, within MIT1002_00292 at 315.393 kb on + strand, within MIT1002_00292 at 315.399 kb on - strand, within MIT1002_00292 at 315.399 kb on - strand, within MIT1002_00292 at 315.413 kb on - strand, within MIT1002_00292 at 315.430 kb on - strand, within MIT1002_00292 at 315.479 kb on + strand, within MIT1002_00292 at 315.480 kb on - strand, within MIT1002_00292 at 315.487 kb on - strand, within MIT1002_00292 at 315.487 kb on - strand, within MIT1002_00292 at 315.496 kb on + strand, within MIT1002_00292 at 315.504 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4 remove 313,135 - +0.9 313,208 - MIT1002_00289 0.28 -2.6 313,278 - MIT1002_00289 0.47 +0.1 313,284 + MIT1002_00289 0.48 -1.3 313,284 + MIT1002_00289 0.48 -0.4 313,292 - MIT1002_00289 0.50 -0.2 313,292 - MIT1002_00289 0.50 +0.1 313,327 + MIT1002_00289 0.60 -0.9 313,428 - MIT1002_00289 0.87 -1.0 313,429 - MIT1002_00289 0.88 +0.1 313,449 + +2.4 313,451 - +0.7 313,462 - -2.0 313,496 + -0.7 313,496 + +0.7 313,540 + -0.4 313,540 + +0.6 313,540 + +0.8 313,545 + +0.8 313,545 + -0.2 313,548 + -1.9 313,548 - +0.2 313,548 - -1.3 313,550 + -1.5 313,558 - -0.0 313,578 + MIT1002_00290 0.15 +2.3 313,578 + MIT1002_00290 0.15 +0.6 313,578 + MIT1002_00290 0.15 +0.1 313,612 - MIT1002_00290 0.34 -0.0 313,620 - MIT1002_00290 0.38 +0.3 313,651 - MIT1002_00290 0.55 -2.8 313,735 - -0.1 313,744 + -0.1 313,752 - +2.7 313,803 + +0.7 313,808 + -0.8 313,819 - -2.3 313,819 - -0.6 313,892 - -0.1 313,903 + -0.3 313,958 + +0.6 313,958 + +1.5 314,077 + -0.6 314,230 - MIT1002_00291 0.34 +0.1 314,255 + MIT1002_00291 0.39 +0.7 314,255 + MIT1002_00291 0.39 -1.4 314,255 + MIT1002_00291 0.39 -0.7 314,262 - MIT1002_00291 0.41 -1.2 314,263 - MIT1002_00291 0.41 +0.0 314,263 - MIT1002_00291 0.41 -0.2 314,275 - MIT1002_00291 0.44 +1.1 314,345 + MIT1002_00291 0.59 +1.0 314,449 + MIT1002_00291 0.81 -0.8 314,472 + MIT1002_00291 0.86 +0.8 314,472 + MIT1002_00291 0.86 +0.1 314,472 + MIT1002_00291 0.86 -0.7 314,480 - MIT1002_00291 0.88 +0.6 314,480 - MIT1002_00291 0.88 +0.5 314,480 - MIT1002_00291 0.88 -2.6 314,482 + MIT1002_00291 0.88 -1.1 314,482 - MIT1002_00291 0.88 -1.7 314,548 + +0.5 314,558 + -0.3 314,561 - +0.6 314,566 - +1.1 314,626 - -0.0 314,669 - +0.4 314,774 + +0.6 314,774 + -0.0 314,780 - -1.6 314,782 - +0.0 314,782 - -0.3 314,782 - -0.1 314,782 - +1.2 314,782 - +0.4 314,804 - +0.0 314,847 - +1.0 314,847 - -1.3 314,852 + +1.6 314,852 + -0.9 314,852 + -1.0 314,852 + -0.4 314,852 + -1.4 314,852 + +0.2 314,852 + -1.1 314,852 + -0.4 314,852 + +1.1 314,855 - -0.8 314,857 + +1.3 314,857 + -1.3 314,857 + -1.4 314,860 - +2.0 314,860 - +1.0 314,860 - -0.0 314,860 - +1.8 314,860 - -0.1 314,862 + -0.8 314,862 + +0.5 314,862 + -0.7 314,862 + -3.3 314,862 + -0.9 314,862 + +0.0 314,862 + +1.2 314,862 + -0.2 314,862 + +0.5 314,862 + -1.5 314,862 + -0.3 314,862 + -0.9 314,862 + +0.4 314,862 + +0.3 314,865 - +0.0 314,867 + -1.2 314,870 - +0.6 314,870 - -0.9 314,870 - -0.0 314,870 - -0.2 314,870 - +0.6 314,870 - +0.9 314,870 - +1.6 314,870 - -0.8 314,870 - -0.8 314,878 + -1.0 314,881 - +0.5 314,886 - -0.6 314,886 - -1.1 314,886 - -0.5 314,886 - +0.5 314,886 - -0.5 314,908 + -0.4 314,909 + +0.9 314,910 + -0.2 314,910 + -0.7 314,910 + +0.7 314,910 + -0.4 314,910 + +0.5 314,910 + +0.7 314,910 + +1.7 314,917 + +0.9 314,918 - +0.2 314,918 - -0.7 314,918 - -1.5 314,918 - +1.6 314,918 - +0.5 314,976 + +1.1 314,986 + -2.0 314,988 + -1.2 314,990 + -0.2 314,990 + +1.0 314,990 + -0.5 314,996 + -0.4 314,996 - +0.3 314,998 + -1.3 314,998 - -0.4 314,998 - +0.2 315,059 + -0.3 315,068 - MIT1002_00292 0.11 -1.0 315,099 - MIT1002_00292 0.17 -0.3 315,153 + MIT1002_00292 0.27 -0.7 315,165 + MIT1002_00292 0.29 +0.6 315,184 - MIT1002_00292 0.32 +0.3 315,261 + MIT1002_00292 0.46 +1.5 315,264 - MIT1002_00292 0.47 +0.0 315,271 + MIT1002_00292 0.48 +1.1 315,271 + MIT1002_00292 0.48 -0.6 315,277 + MIT1002_00292 0.49 +0.5 315,278 + MIT1002_00292 0.50 -1.3 315,278 + MIT1002_00292 0.50 -0.7 315,278 + MIT1002_00292 0.50 -0.6 315,284 - MIT1002_00292 0.51 +0.6 315,285 - MIT1002_00292 0.51 -0.1 315,285 - MIT1002_00292 0.51 -0.7 315,285 - MIT1002_00292 0.51 +1.0 315,286 - MIT1002_00292 0.51 -2.4 315,286 - MIT1002_00292 0.51 -0.2 315,288 + MIT1002_00292 0.51 +0.5 315,300 + MIT1002_00292 0.54 +1.5 315,302 + MIT1002_00292 0.54 -0.6 315,356 + MIT1002_00292 0.64 -1.3 315,356 + MIT1002_00292 0.64 +0.8 315,356 + MIT1002_00292 0.64 -2.0 315,364 - MIT1002_00292 0.65 +1.3 315,364 - MIT1002_00292 0.65 +1.7 315,364 - MIT1002_00292 0.65 +0.5 315,364 - MIT1002_00292 0.65 +0.4 315,364 - MIT1002_00292 0.65 +0.8 315,378 + MIT1002_00292 0.68 -1.8 315,378 + MIT1002_00292 0.68 -0.1 315,378 + MIT1002_00292 0.68 -0.1 315,378 + MIT1002_00292 0.68 +2.2 315,378 + MIT1002_00292 0.68 +0.3 315,378 + MIT1002_00292 0.68 -0.3 315,386 - MIT1002_00292 0.69 +1.3 315,386 - MIT1002_00292 0.69 -1.8 315,386 - MIT1002_00292 0.69 +0.6 315,386 - MIT1002_00292 0.69 -0.5 315,386 - MIT1002_00292 0.69 -2.3 315,386 - MIT1002_00292 0.69 +0.1 315,388 - MIT1002_00292 0.70 +0.0 315,393 + MIT1002_00292 0.71 -0.4 315,393 + MIT1002_00292 0.71 -0.8 315,393 + MIT1002_00292 0.71 -0.3 315,399 - MIT1002_00292 0.72 -0.1 315,399 - MIT1002_00292 0.72 -0.6 315,413 - MIT1002_00292 0.74 -0.7 315,430 - MIT1002_00292 0.78 +1.9 315,479 + MIT1002_00292 0.87 -0.8 315,480 - MIT1002_00292 0.87 -0.1 315,487 - MIT1002_00292 0.88 -0.1 315,487 - MIT1002_00292 0.88 -0.1 315,496 + MIT1002_00292 0.90 +0.5 315,504 - +1.1
Or see this region's nucleotide sequence