Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00183 and MIT1002_00184 are separated by 114 nucleotides MIT1002_00184 and MIT1002_00185 are separated by 107 nucleotides
MIT1002_00183: MIT1002_00183 - Alpha/beta hydrolase family protein, at 199,409 to 200,272
_00183
MIT1002_00184: MIT1002_00184 - hypothetical protein, at 200,387 to 200,542
_00184
MIT1002_00185: MIT1002_00185 - hypothetical protein, at 200,650 to 201,978
_00185
Position (kb) 200
201 Strain fitness (log2 ratio) -2
-1
0
1
2 at 199.449 kb on - strand at 199.470 kb on + strand at 199.478 kb on - strand at 199.492 kb on - strand at 199.530 kb on + strand, within MIT1002_00183 at 199.574 kb on + strand, within MIT1002_00183 at 199.574 kb on + strand, within MIT1002_00183 at 199.582 kb on - strand, within MIT1002_00183 at 199.641 kb on - strand, within MIT1002_00183 at 199.646 kb on - strand, within MIT1002_00183 at 199.649 kb on + strand, within MIT1002_00183 at 199.652 kb on - strand, within MIT1002_00183 at 199.714 kb on - strand, within MIT1002_00183 at 199.763 kb on + strand, within MIT1002_00183 at 199.771 kb on - strand, within MIT1002_00183 at 199.818 kb on + strand, within MIT1002_00183 at 199.826 kb on - strand, within MIT1002_00183 at 199.943 kb on + strand, within MIT1002_00183 at 199.951 kb on - strand, within MIT1002_00183 at 199.991 kb on + strand, within MIT1002_00183 at 200.001 kb on + strand, within MIT1002_00183 at 200.038 kb on + strand, within MIT1002_00183 at 200.039 kb on + strand, within MIT1002_00183 at 200.057 kb on + strand, within MIT1002_00183 at 200.081 kb on - strand, within MIT1002_00183 at 200.099 kb on - strand, within MIT1002_00183 at 200.103 kb on - strand, within MIT1002_00183 at 200.110 kb on + strand, within MIT1002_00183 at 200.154 kb on - strand, within MIT1002_00183 at 200.200 kb on + strand at 200.211 kb on - strand at 200.234 kb on + strand at 200.333 kb on - strand at 200.443 kb on + strand, within MIT1002_00184 at 200.451 kb on - strand, within MIT1002_00184 at 200.453 kb on + strand, within MIT1002_00184 at 200.640 kb on - strand at 200.659 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4 remove 199,449 - -2.5 199,470 + +0.9 199,478 - -0.0 199,492 - +0.1 199,530 + MIT1002_00183 0.14 -1.0 199,574 + MIT1002_00183 0.19 -0.4 199,574 + MIT1002_00183 0.19 -0.2 199,582 - MIT1002_00183 0.20 -0.6 199,641 - MIT1002_00183 0.27 -1.7 199,646 - MIT1002_00183 0.27 -1.6 199,649 + MIT1002_00183 0.28 +1.3 199,652 - MIT1002_00183 0.28 +0.1 199,714 - MIT1002_00183 0.35 -0.0 199,763 + MIT1002_00183 0.41 -0.1 199,771 - MIT1002_00183 0.42 -0.6 199,818 + MIT1002_00183 0.47 +0.7 199,826 - MIT1002_00183 0.48 -2.1 199,943 + MIT1002_00183 0.62 -0.0 199,951 - MIT1002_00183 0.63 +0.6 199,991 + MIT1002_00183 0.67 -0.5 200,001 + MIT1002_00183 0.69 -0.2 200,038 + MIT1002_00183 0.73 +0.1 200,039 + MIT1002_00183 0.73 -0.0 200,057 + MIT1002_00183 0.75 +1.1 200,081 - MIT1002_00183 0.78 +1.0 200,099 - MIT1002_00183 0.80 +0.7 200,103 - MIT1002_00183 0.80 -1.5 200,110 + MIT1002_00183 0.81 -0.2 200,154 - MIT1002_00183 0.86 +0.1 200,200 + +0.3 200,211 - -1.3 200,234 + -0.3 200,333 - -1.2 200,443 + MIT1002_00184 0.36 +0.4 200,451 - MIT1002_00184 0.41 +2.6 200,453 + MIT1002_00184 0.42 +0.2 200,640 - +0.6 200,659 - -0.0
Or see this region's nucleotide sequence