Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00124 and MIT1002_00125 are separated by 137 nucleotides MIT1002_00125 and MIT1002_00126 are separated by 224 nucleotides MIT1002_00126 and MIT1002_00127 are separated by 150 nucleotides
MIT1002_00124: MIT1002_00124 - Outer membrane protein W precursor, at 134,427 to 135,098
_00124
MIT1002_00125: MIT1002_00125 - hypothetical protein, at 135,236 to 135,703
_00125
MIT1002_00126: MIT1002_00126 - hypothetical protein, at 135,928 to 136,236
_00126
MIT1002_00127: MIT1002_00127 - Blue light- and temperature-regulated antirepressor YcgF, at 136,387 to 137,574
_00127
Position (kb) 135
136 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7 at 134.304 kb on + strand at 134.370 kb on + strand at 134.387 kb on - strand at 134.387 kb on - strand at 134.389 kb on + strand at 134.389 kb on + strand at 134.397 kb on - strand at 134.397 kb on - strand at 134.456 kb on + strand at 134.490 kb on + strand at 134.507 kb on + strand, within MIT1002_00124 at 134.526 kb on + strand, within MIT1002_00124 at 134.587 kb on + strand, within MIT1002_00124 at 134.595 kb on - strand, within MIT1002_00124 at 134.691 kb on + strand, within MIT1002_00124 at 134.696 kb on + strand, within MIT1002_00124 at 134.702 kb on + strand, within MIT1002_00124 at 134.725 kb on - strand, within MIT1002_00124 at 134.861 kb on + strand, within MIT1002_00124 at 134.869 kb on - strand, within MIT1002_00124 at 134.874 kb on - strand, within MIT1002_00124 at 134.948 kb on - strand, within MIT1002_00124 at 135.133 kb on + strand at 135.170 kb on + strand at 135.222 kb on + strand at 135.334 kb on + strand, within MIT1002_00125 at 135.334 kb on - strand, within MIT1002_00125 at 135.432 kb on + strand, within MIT1002_00125 at 135.447 kb on - strand, within MIT1002_00125 at 135.459 kb on - strand, within MIT1002_00125 at 135.465 kb on + strand, within MIT1002_00125 at 135.473 kb on - strand, within MIT1002_00125 at 135.557 kb on - strand, within MIT1002_00125 at 135.573 kb on + strand, within MIT1002_00125 at 135.595 kb on - strand, within MIT1002_00125 at 135.597 kb on + strand, within MIT1002_00125 at 135.680 kb on + strand at 135.688 kb on - strand at 135.688 kb on - strand at 135.820 kb on + strand at 135.829 kb on - strand at 135.861 kb on - strand at 135.867 kb on - strand at 135.867 kb on - strand at 135.896 kb on + strand at 135.918 kb on + strand at 136.046 kb on + strand, within MIT1002_00126 at 136.054 kb on - strand, within MIT1002_00126 at 136.074 kb on - strand, within MIT1002_00126 at 136.092 kb on + strand, within MIT1002_00126 at 136.095 kb on - strand, within MIT1002_00126 at 136.149 kb on - strand, within MIT1002_00126 at 136.186 kb on - strand, within MIT1002_00126 at 136.308 kb on - strand at 136.352 kb on - strand at 136.526 kb on + strand, within MIT1002_00127
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4 remove 134,304 + -0.5 134,370 + +0.1 134,387 - +1.0 134,387 - +1.5 134,389 + -0.7 134,389 + -0.8 134,397 - +7.2 134,397 - +1.5 134,456 + -0.3 134,490 + +3.5 134,507 + MIT1002_00124 0.12 -0.1 134,526 + MIT1002_00124 0.15 -0.7 134,587 + MIT1002_00124 0.24 -0.3 134,595 - MIT1002_00124 0.25 -0.1 134,691 + MIT1002_00124 0.39 +0.9 134,696 + MIT1002_00124 0.40 +0.8 134,702 + MIT1002_00124 0.41 +0.9 134,725 - MIT1002_00124 0.44 -0.4 134,861 + MIT1002_00124 0.65 -0.1 134,869 - MIT1002_00124 0.66 +1.0 134,874 - MIT1002_00124 0.67 -1.0 134,948 - MIT1002_00124 0.78 -2.9 135,133 + -2.0 135,170 + -1.0 135,222 + -0.2 135,334 + MIT1002_00125 0.21 -0.8 135,334 - MIT1002_00125 0.21 -0.4 135,432 + MIT1002_00125 0.42 -0.4 135,447 - MIT1002_00125 0.45 -0.4 135,459 - MIT1002_00125 0.48 +0.5 135,465 + MIT1002_00125 0.49 +0.1 135,473 - MIT1002_00125 0.51 +1.2 135,557 - MIT1002_00125 0.69 +0.5 135,573 + MIT1002_00125 0.72 +0.3 135,595 - MIT1002_00125 0.77 +0.3 135,597 + MIT1002_00125 0.77 +0.3 135,680 + +0.3 135,688 - +0.7 135,688 - -0.5 135,820 + -0.1 135,829 - -1.0 135,861 - -2.4 135,867 - -0.2 135,867 - -0.6 135,896 + -1.9 135,918 + +0.4 136,046 + MIT1002_00126 0.38 +0.9 136,054 - MIT1002_00126 0.41 +0.7 136,074 - MIT1002_00126 0.47 -0.1 136,092 + MIT1002_00126 0.53 +1.0 136,095 - MIT1002_00126 0.54 -1.7 136,149 - MIT1002_00126 0.72 -1.2 136,186 - MIT1002_00126 0.83 -0.7 136,308 - +0.5 136,352 - +0.4 136,526 + MIT1002_00127 0.12 -0.0
Or see this region's nucleotide sequence