Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00099

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4
106,041	+		MIT1002_00097	0.76	+0.1
106,046	+		MIT1002_00097	0.76	-0.7
106,046	+		MIT1002_00097	0.76	+0.0
106,046	+		MIT1002_00097	0.76	-0.1
106,054	-		MIT1002_00097	0.77	+0.0
106,054	-		MIT1002_00097	0.77	-1.2
106,054	-		MIT1002_00097	0.77	-0.1
106,054	-		MIT1002_00097	0.77	-0.2
106,054	-		MIT1002_00097	0.77	-0.9
106,159	-		MIT1002_00097	0.82	-0.8
106,184	-		MIT1002_00097	0.84	-1.8
106,227	+		MIT1002_00097	0.86	-1.2
106,227	+		MIT1002_00097	0.86	+0.8
106,227	+		MIT1002_00097	0.86	-1.8
106,234	-		MIT1002_00097	0.86	+0.8
106,235	-		MIT1002_00097	0.86	+1.2
106,235	-		MIT1002_00097	0.86	-0.0
106,252	-		MIT1002_00097	0.87	+1.3
106,274	+		MIT1002_00097	0.88	+0.0
106,274	+		MIT1002_00097	0.88	-0.5
106,274	+		MIT1002_00097	0.88	-0.4
106,275	-		MIT1002_00097	0.88	-1.6
106,282	-		MIT1002_00097	0.89	-1.4
106,282	-		MIT1002_00097	0.89	+0.3
106,284	+		MIT1002_00097	0.89	-1.4
106,292	-		MIT1002_00097	0.89	-0.3
106,340	+				-0.9
106,439	-				-0.5
106,476	+				-2.6
106,486	-				-0.6
106,542	-				-0.6
106,547	-				-1.1
106,548	-				-1.3
106,559	+				-1.0
106,567	-				-1.3
106,573	-				+0.2
106,575	+				+0.4
106,575	+				-0.8
106,575	+				-0.8
106,583	-				-0.5
106,583	-				-1.2
106,583	-				+0.4
106,619	-				-0.9
106,628	-				-0.6
106,629	+				+0.6
106,635	-				+0.5
106,637	-				+0.5
106,677	-				+1.9
106,702	-				+0.2
106,757	+				-1.3
106,757	+				-0.9
106,807	-				-3.9
106,807	-				+0.2
106,807	-				+0.1
106,809	+				+0.2
107,003	+				-0.8
107,109	+		MIT1002_00099	0.10	-0.0
107,109	+		MIT1002_00099	0.10	+0.9
107,117	-		MIT1002_00099	0.11	-2.0
107,170	+		MIT1002_00099	0.15	-2.5
107,224	+		MIT1002_00099	0.20	-3.3
107,224	+		MIT1002_00099	0.20	-4.1
107,224	+		MIT1002_00099	0.20	-0.6
107,224	+		MIT1002_00099	0.20	-1.6
107,224	+		MIT1002_00099	0.20	-3.3
107,232	-		MIT1002_00099	0.20	-3.2
107,232	-		MIT1002_00099	0.20	-5.6
107,232	-		MIT1002_00099	0.20	-3.2
107,232	-		MIT1002_00099	0.20	-2.3
107,232	-		MIT1002_00099	0.20	-2.7
107,250	+		MIT1002_00099	0.22	-3.5
107,258	-		MIT1002_00099	0.23	-2.1
107,360	+		MIT1002_00099	0.31	-0.8
107,360	+		MIT1002_00099	0.31	-3.7
107,377	+		MIT1002_00099	0.33	-4.0
107,403	-		MIT1002_00099	0.35	-1.0
107,426	+		MIT1002_00099	0.37	-2.8
107,485	+		MIT1002_00099	0.42	-0.3
107,486	+		MIT1002_00099	0.42	-3.1
107,517	+		MIT1002_00099	0.45	-0.4
107,526	-		MIT1002_00099	0.45	-0.3
107,583	+		MIT1002_00099	0.50	-3.1
107,642	+		MIT1002_00099	0.55	-0.6
107,879	+		MIT1002_00099	0.76	-2.0
107,925	-		MIT1002_00099	0.79	-3.6
107,954	-		MIT1002_00099	0.82	-3.2
107,956	+		MIT1002_00099	0.82	-4.5
107,981	+		MIT1002_00099	0.84	-4.3
107,989	-		MIT1002_00099	0.85	-1.6
108,041	+		MIT1002_00099	0.89	-3.1
108,049	-				-3.5
108,054	+				-6.8
108,062	-				-2.0
108,062	-				-1.2
108,062	-				-2.1
108,062	-				-1.2
108,203	-				+0.5
108,283	+		MIT1002_00100	0.10	-4.0
108,424	-		MIT1002_00100	0.22	-2.4
108,424	-		MIT1002_00100	0.22	-4.0
108,459	-		MIT1002_00100	0.25	-1.9
108,459	-		MIT1002_00100	0.25	-2.7
108,459	-		MIT1002_00100	0.25	-1.3
108,459	-		MIT1002_00100	0.25	-5.6
108,464	+		MIT1002_00100	0.26	-3.9
108,538	-		MIT1002_00100	0.32	-2.8
108,538	-		MIT1002_00100	0.32	-2.6
108,538	-		MIT1002_00100	0.32	-3.0
108,538	-		MIT1002_00100	0.32	-2.1
108,559	+		MIT1002_00100	0.34	-1.6
108,619	+		MIT1002_00100	0.39	-3.1
108,627	-		MIT1002_00100	0.40	-2.8
108,628	-		MIT1002_00100	0.40	-3.3
108,650	+		MIT1002_00100	0.42	-3.6
108,672	+		MIT1002_00100	0.43	-2.5
108,680	-		MIT1002_00100	0.44	-4.0
108,692	+		MIT1002_00100	0.45	-4.5
108,692	+		MIT1002_00100	0.45	-2.4
108,692	+		MIT1002_00100	0.45	-3.8
108,700	+		MIT1002_00100	0.46	-1.7
108,700	-		MIT1002_00100	0.46	-1.0
108,702	+		MIT1002_00100	0.46	-3.9
108,710	-		MIT1002_00100	0.47	-0.8
108,718	-		MIT1002_00100	0.47	-1.3
108,793	-		MIT1002_00100	0.54	-2.3
108,890	-		MIT1002_00100	0.62	-3.6
109,070	-		MIT1002_00100	0.77	-2.9
109,129	+		MIT1002_00100	0.82	-2.6