Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00011 and MIT1002_00012 are separated by 299 nucleotides MIT1002_00012 and MIT1002_00013 are separated by 174 nucleotides
MIT1002_00011: MIT1002_00011 - hypothetical protein, at 12,036 to 12,737
_00011
MIT1002_00012: MIT1002_00012 - Cytochrome c4 precursor, at 13,037 to 13,660
_00012
MIT1002_00013: MIT1002_00013 - putative GTP-binding protein EngB, at 13,835 to 14,470
_00013
Position (kb) 13
14 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 12.080 kb on + strand at 12.107 kb on + strand, within MIT1002_00011 at 12.273 kb on + strand, within MIT1002_00011 at 12.273 kb on - strand, within MIT1002_00011 at 12.275 kb on + strand, within MIT1002_00011 at 12.284 kb on + strand, within MIT1002_00011 at 12.289 kb on + strand, within MIT1002_00011 at 12.292 kb on - strand, within MIT1002_00011 at 12.297 kb on - strand, within MIT1002_00011 at 12.325 kb on + strand, within MIT1002_00011 at 12.338 kb on - strand, within MIT1002_00011 at 12.427 kb on + strand, within MIT1002_00011 at 12.512 kb on - strand, within MIT1002_00011 at 12.520 kb on - strand, within MIT1002_00011 at 12.528 kb on - strand, within MIT1002_00011 at 12.533 kb on + strand, within MIT1002_00011 at 12.533 kb on + strand, within MIT1002_00011 at 12.541 kb on - strand, within MIT1002_00011 at 12.542 kb on - strand, within MIT1002_00011 at 12.542 kb on - strand, within MIT1002_00011 at 12.615 kb on - strand, within MIT1002_00011 at 12.673 kb on + strand at 12.673 kb on + strand at 12.678 kb on + strand at 12.681 kb on - strand at 12.686 kb on - strand at 12.698 kb on - strand at 12.730 kb on + strand at 12.738 kb on - strand at 12.738 kb on - strand at 12.777 kb on + strand at 12.779 kb on - strand at 12.820 kb on - strand at 12.852 kb on - strand at 13.048 kb on - strand at 13.214 kb on + strand, within MIT1002_00012 at 13.226 kb on + strand, within MIT1002_00012 at 13.271 kb on - strand, within MIT1002_00012 at 13.286 kb on + strand, within MIT1002_00012 at 13.330 kb on - strand, within MIT1002_00012 at 13.341 kb on - strand, within MIT1002_00012 at 13.487 kb on - strand, within MIT1002_00012 at 13.577 kb on - strand, within MIT1002_00012 at 13.668 kb on + strand at 14.439 kb on + strand at 14.460 kb on + strand at 14.468 kb on - strand at 14.468 kb on - strand at 14.482 kb on - strand at 14.482 kb on - strand at 14.482 kb on - strand at 14.497 kb on + strand at 14.497 kb on + strand at 14.497 kb on + strand at 14.497 kb on + strand at 14.497 kb on + strand at 14.497 kb on + strand at 14.497 kb on + strand at 14.505 kb on - strand at 14.505 kb on - strand at 14.505 kb on - strand at 14.505 kb on - strand at 14.505 kb on - strand at 14.512 kb on + strand at 14.519 kb on + strand at 14.621 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4 remove 12,080 + -1.9 12,107 + MIT1002_00011 0.10 +1.3 12,273 + MIT1002_00011 0.34 -1.7 12,273 - MIT1002_00011 0.34 -0.5 12,275 + MIT1002_00011 0.34 -0.8 12,284 + MIT1002_00011 0.35 -0.0 12,289 + MIT1002_00011 0.36 +1.3 12,292 - MIT1002_00011 0.36 -0.6 12,297 - MIT1002_00011 0.37 -0.3 12,325 + MIT1002_00011 0.41 +0.4 12,338 - MIT1002_00011 0.43 +0.8 12,427 + MIT1002_00011 0.56 +0.2 12,512 - MIT1002_00011 0.68 +0.5 12,520 - MIT1002_00011 0.69 -0.5 12,528 - MIT1002_00011 0.70 +0.7 12,533 + MIT1002_00011 0.71 +1.6 12,533 + MIT1002_00011 0.71 +0.6 12,541 - MIT1002_00011 0.72 -1.0 12,542 - MIT1002_00011 0.72 +2.3 12,542 - MIT1002_00011 0.72 +1.0 12,615 - MIT1002_00011 0.82 +0.0 12,673 + -1.9 12,673 + -1.6 12,678 + +0.6 12,681 - -0.0 12,686 - +0.5 12,698 - -0.7 12,730 + -0.2 12,738 - -2.1 12,738 - +2.0 12,777 + +0.5 12,779 - -2.1 12,820 - -0.3 12,852 - -0.2 13,048 - -3.0 13,214 + MIT1002_00012 0.28 -2.6 13,226 + MIT1002_00012 0.30 -2.0 13,271 - MIT1002_00012 0.38 -1.8 13,286 + MIT1002_00012 0.40 -2.6 13,330 - MIT1002_00012 0.47 -1.7 13,341 - MIT1002_00012 0.49 -2.7 13,487 - MIT1002_00012 0.72 -0.6 13,577 - MIT1002_00012 0.87 -0.0 13,668 + -2.2 14,439 + +0.6 14,460 + -0.0 14,468 - -2.5 14,468 - -1.7 14,482 - +0.7 14,482 - +0.3 14,482 - +0.7 14,497 + +0.8 14,497 + -0.2 14,497 + +0.8 14,497 + -0.5 14,497 + +1.0 14,497 + -0.3 14,497 + +1.3 14,505 - -0.0 14,505 - +0.7 14,505 - +1.4 14,505 - +0.5 14,505 - -1.8 14,512 + +0.9 14,519 + -2.5 14,621 - -1.2
Or see this region's nucleotide sequence