Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS41820 and QEN71_RS41825 are separated by 190 nucleotides QEN71_RS41825 and QEN71_RS41830 are separated by 30 nucleotides QEN71_RS41830 and QEN71_RS41835 overlap by 4 nucleotides
QEN71_RS41820: QEN71_RS41820 - hypothetical protein, at 446,357 to 447,148
_RS41820
QEN71_RS41825: QEN71_RS41825 - IS66 family transposase, at 447,339 to 448,925
_RS41825
QEN71_RS41830: QEN71_RS41830 - IS66 family insertion sequence element accessory protein TnpB, at 448,956 to 449,300
_RS41830
QEN71_RS41835: QEN71_RS41835 - transposase, at 449,297 to 449,779
_RS41835
Position (kb) 447
448
449 Strain fitness (log2 ratio) -2
-1
0
1
2 at 446.362 kb on + strand at 446.362 kb on + strand at 446.364 kb on + strand at 446.364 kb on + strand at 446.365 kb on - strand at 446.498 kb on - strand, within QEN71_RS41820 at 446.544 kb on - strand, within QEN71_RS41820 at 446.544 kb on - strand, within QEN71_RS41820 at 446.681 kb on - strand, within QEN71_RS41820 at 446.750 kb on - strand, within QEN71_RS41820 at 446.750 kb on - strand, within QEN71_RS41820 at 446.789 kb on + strand, within QEN71_RS41820 at 446.929 kb on + strand, within QEN71_RS41820 at 446.929 kb on + strand, within QEN71_RS41820 at 446.930 kb on - strand, within QEN71_RS41820 at 446.939 kb on + strand, within QEN71_RS41820 at 446.939 kb on + strand, within QEN71_RS41820 at 446.940 kb on - strand, within QEN71_RS41820 at 446.964 kb on - strand, within QEN71_RS41820 at 446.964 kb on - strand, within QEN71_RS41820 at 447.021 kb on + strand, within QEN71_RS41820 at 447.203 kb on + strand at 447.204 kb on - strand at 447.256 kb on - strand at 449.805 kb on + strand at 449.805 kb on + strand at 449.824 kb on + strand at 449.825 kb on - strand at 449.867 kb on - strand at 449.879 kb on - strand at 449.904 kb on + strand at 449.905 kb on - strand at 449.918 kb on + strand at 449.918 kb on + strand at 449.919 kb on - strand at 449.919 kb on - strand at 449.923 kb on + strand at 449.923 kb on + strand at 449.923 kb on + strand at 449.924 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 446,362 + -0.6 446,362 + -0.5 446,364 + -1.2 446,364 + -0.2 446,365 - -0.5 446,498 - QEN71_RS41820 0.18 +0.9 446,544 - QEN71_RS41820 0.24 -0.6 446,544 - QEN71_RS41820 0.24 -2.3 446,681 - QEN71_RS41820 0.41 +0.4 446,750 - QEN71_RS41820 0.50 +1.2 446,750 - QEN71_RS41820 0.50 +0.6 446,789 + QEN71_RS41820 0.55 +0.4 446,929 + QEN71_RS41820 0.72 -0.1 446,929 + QEN71_RS41820 0.72 -0.1 446,930 - QEN71_RS41820 0.72 +1.9 446,939 + QEN71_RS41820 0.73 -1.2 446,939 + QEN71_RS41820 0.73 -0.3 446,940 - QEN71_RS41820 0.74 -1.0 446,964 - QEN71_RS41820 0.77 +0.7 446,964 - QEN71_RS41820 0.77 -0.2 447,021 + QEN71_RS41820 0.84 +1.3 447,203 + -0.1 447,204 - +0.6 447,256 - +0.3 449,805 + -0.1 449,805 + +0.0 449,824 + +0.0 449,825 - -0.9 449,867 - -1.2 449,879 - +0.5 449,904 + -0.5 449,905 - -0.2 449,918 + +0.1 449,918 + +0.9 449,919 - -0.4 449,919 - -0.3 449,923 + +1.4 449,923 + +0.2 449,923 + -0.2 449,924 - -0.0
Or see this region's nucleotide sequence