Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS40090 and QEN71_RS40095 overlap by 20 nucleotides QEN71_RS40095 and QEN71_RS40100 are separated by 315 nucleotides QEN71_RS40100 and QEN71_RS40105 are separated by 85 nucleotides QEN71_RS40105 and QEN71_RS40110 overlap by 22 nucleotides QEN71_RS40110 and QEN71_RS40115 overlap by 26 nucleotides QEN71_RS40115 and QEN71_RS40120 are separated by 77 nucleotides
QEN71_RS40090: QEN71_RS40090 - recombinase family protein, at 73,226 to 75,283
_RS40090
QEN71_RS40095: QEN71_RS40095 - hypothetical protein, at 75,264 to 75,431
_RS40095
QEN71_RS40100: QEN71_RS40100 - ATP-binding protein, at 75,747 to 75,917
_RS40100
QEN71_RS40105: QEN71_RS40105 - tyrosine-type recombinase/integrase, at 76,003 to 76,614
_RS40105
QEN71_RS40110: QEN71_RS40110 - hypothetical protein, at 76,593 to 76,889
_RS40110
QEN71_RS40115: QEN71_RS40115 - hypothetical protein, at 76,864 to 76,947
_RS40115
QEN71_RS40120: QEN71_RS40120 - tyrosine-type recombinase/integrase, at 77,025 to 78,002
_RS40120
Position (kb) 76
77 Strain fitness (log2 ratio) -1
0
1 at 75.032 kb on + strand, within QEN71_RS40090 at 75.032 kb on + strand, within QEN71_RS40090 at 75.033 kb on - strand, within QEN71_RS40090 at 75.998 kb on - strand at 76.266 kb on + strand, within QEN71_RS40105 at 76.498 kb on + strand, within QEN71_RS40105 at 76.643 kb on + strand, within QEN71_RS40110 at 77.351 kb on + strand, within QEN71_RS40120 at 77.351 kb on + strand, within QEN71_RS40120 at 77.594 kb on - strand, within QEN71_RS40120 at 77.594 kb on - strand, within QEN71_RS40120 at 77.594 kb on - strand, within QEN71_RS40120
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 75,032 + QEN71_RS40090 0.88 +0.2 75,032 + QEN71_RS40090 0.88 -0.8 75,033 - QEN71_RS40090 0.88 +0.5 75,998 - -0.7 76,266 + QEN71_RS40105 0.43 +0.3 76,498 + QEN71_RS40105 0.81 +0.2 76,643 + QEN71_RS40110 0.17 +0.1 77,351 + QEN71_RS40120 0.33 -0.9 77,351 + QEN71_RS40120 0.33 -0.8 77,594 - QEN71_RS40120 0.58 -0.1 77,594 - QEN71_RS40120 0.58 +0.9 77,594 - QEN71_RS40120 0.58 +0.0
Or see this region's nucleotide sequence