Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS32285

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS32280 and QEN71_RS32285 are separated by 578 nucleotidesQEN71_RS32285 and QEN71_RS32290 are separated by 108 nucleotides QEN71_RS32280: QEN71_RS32280 - lyase, at 582,916 to 583,863 _RS32280 QEN71_RS32285: QEN71_RS32285 - branched-chain amino acid ABC transporter substrate-binding protein, at 584,442 to 585,578 _RS32285 QEN71_RS32290: QEN71_RS32290 - metallophosphoesterase family protein, at 585,687 to 587,405 _RS32290 Position (kb) 584 585 586Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 583.469 kb on + strand, within QEN71_RS32280at 583.469 kb on + strand, within QEN71_RS32280at 583.469 kb on + strand, within QEN71_RS32280at 583.470 kb on - strand, within QEN71_RS32280at 583.525 kb on - strand, within QEN71_RS32280at 583.654 kb on + strand, within QEN71_RS32280at 583.751 kb on + strand, within QEN71_RS32280at 583.852 kb on + strandat 583.859 kb on - strandat 583.999 kb on + strandat 584.000 kb on - strandat 584.000 kb on - strandat 584.000 kb on - strandat 584.000 kb on - strandat 584.164 kb on - strandat 584.164 kb on - strandat 584.175 kb on + strandat 584.175 kb on + strandat 584.176 kb on - strandat 584.176 kb on - strandat 584.329 kb on + strandat 584.749 kb on - strand, within QEN71_RS32285at 584.749 kb on - strand, within QEN71_RS32285at 584.749 kb on - strand, within QEN71_RS32285at 584.749 kb on - strand, within QEN71_RS32285at 584.882 kb on + strand, within QEN71_RS32285at 584.910 kb on + strand, within QEN71_RS32285at 584.910 kb on + strand, within QEN71_RS32285at 584.910 kb on + strand, within QEN71_RS32285at 584.910 kb on + strand, within QEN71_RS32285at 584.910 kb on + strand, within QEN71_RS32285at 584.911 kb on - strand, within QEN71_RS32285at 584.911 kb on - strand, within QEN71_RS32285at 584.911 kb on - strand, within QEN71_RS32285at 584.911 kb on - strand, within QEN71_RS32285at 584.911 kb on - strand, within QEN71_RS32285at 585.039 kb on + strand, within QEN71_RS32285at 585.039 kb on + strand, within QEN71_RS32285at 585.039 kb on + strand, within QEN71_RS32285at 585.040 kb on - strand, within QEN71_RS32285at 585.041 kb on + strand, within QEN71_RS32285at 585.041 kb on + strand, within QEN71_RS32285at 585.042 kb on - strand, within QEN71_RS32285at 585.042 kb on - strand, within QEN71_RS32285at 585.042 kb on - strand, within QEN71_RS32285at 585.042 kb on - strand, within QEN71_RS32285at 585.085 kb on + strand, within QEN71_RS32285at 585.085 kb on + strand, within QEN71_RS32285at 585.086 kb on - strand, within QEN71_RS32285at 585.086 kb on - strand, within QEN71_RS32285at 585.086 kb on - strand, within QEN71_RS32285at 585.264 kb on + strand, within QEN71_RS32285at 585.264 kb on + strand, within QEN71_RS32285at 585.265 kb on - strand, within QEN71_RS32285at 585.348 kb on + strand, within QEN71_RS32285at 585.349 kb on - strand, within QEN71_RS32285at 585.454 kb on - strand, within QEN71_RS32285at 585.473 kb on + strandat 585.474 kb on - strandat 585.522 kb on + strandat 585.685 kb on + strandat 585.686 kb on - strandat 585.734 kb on - strandat 585.734 kb on - strandat 585.772 kb on + strandat 585.773 kb on - strandat 585.776 kb on - strandat 585.776 kb on - strandat 585.842 kb on - strandat 585.997 kb on + strand, within QEN71_RS32290at 585.997 kb on + strand, within QEN71_RS32290at 585.997 kb on + strand, within QEN71_RS32290at 585.997 kb on + strand, within QEN71_RS32290at 585.998 kb on - strand, within QEN71_RS32290at 585.998 kb on - strand, within QEN71_RS32290at 586.070 kb on + strand, within QEN71_RS32290at 586.070 kb on + strand, within QEN71_RS32290at 586.071 kb on - strand, within QEN71_RS32290at 586.071 kb on - strand, within QEN71_RS32290at 586.071 kb on - strand, within QEN71_RS32290at 586.192 kb on + strand, within QEN71_RS32290at 586.193 kb on - strand, within QEN71_RS32290at 586.340 kb on + strand, within QEN71_RS32290at 586.417 kb on + strand, within QEN71_RS32290at 586.418 kb on - strand, within QEN71_RS32290at 586.418 kb on - strand, within QEN71_RS32290at 586.418 kb on - strand, within QEN71_RS32290at 586.511 kb on - strand, within QEN71_RS32290at 586.567 kb on + strand, within QEN71_RS32290

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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583,469 + QEN71_RS32280 0.58 +0.8
583,469 + QEN71_RS32280 0.58 +0.3
583,469 + QEN71_RS32280 0.58 -0.4
583,470 - QEN71_RS32280 0.58 -0.5
583,525 - QEN71_RS32280 0.64 -0.2
583,654 + QEN71_RS32280 0.78 +0.6
583,751 + QEN71_RS32280 0.88 +0.1
583,852 + -0.7
583,859 - -0.4
583,999 + +0.6
584,000 - +1.3
584,000 - -1.0
584,000 - +0.0
584,000 - -1.4
584,164 - -1.2
584,164 - -0.3
584,175 + -0.3
584,175 + -0.1
584,176 - -0.3
584,176 - +0.3
584,329 + -0.5
584,749 - QEN71_RS32285 0.27 +0.2
584,749 - QEN71_RS32285 0.27 -0.8
584,749 - QEN71_RS32285 0.27 +0.3
584,749 - QEN71_RS32285 0.27 +1.4
584,882 + QEN71_RS32285 0.39 +1.2
584,910 + QEN71_RS32285 0.41 -0.6
584,910 + QEN71_RS32285 0.41 -0.1
584,910 + QEN71_RS32285 0.41 +0.9
584,910 + QEN71_RS32285 0.41 -0.3
584,910 + QEN71_RS32285 0.41 -0.1
584,911 - QEN71_RS32285 0.41 -0.1
584,911 - QEN71_RS32285 0.41 -1.4
584,911 - QEN71_RS32285 0.41 -0.1
584,911 - QEN71_RS32285 0.41 +0.0
584,911 - QEN71_RS32285 0.41 +0.4
585,039 + QEN71_RS32285 0.53 -0.0
585,039 + QEN71_RS32285 0.53 +0.3
585,039 + QEN71_RS32285 0.53 +1.4
585,040 - QEN71_RS32285 0.53 -1.8
585,041 + QEN71_RS32285 0.53 -0.7
585,041 + QEN71_RS32285 0.53 -1.7
585,042 - QEN71_RS32285 0.53 -1.7
585,042 - QEN71_RS32285 0.53 -0.7
585,042 - QEN71_RS32285 0.53 +0.4
585,042 - QEN71_RS32285 0.53 -0.0
585,085 + QEN71_RS32285 0.57 -2.3
585,085 + QEN71_RS32285 0.57 +0.6
585,086 - QEN71_RS32285 0.57 -0.0
585,086 - QEN71_RS32285 0.57 -0.0
585,086 - QEN71_RS32285 0.57 -1.3
585,264 + QEN71_RS32285 0.72 -0.2
585,264 + QEN71_RS32285 0.72 +0.2
585,265 - QEN71_RS32285 0.72 -0.7
585,348 + QEN71_RS32285 0.80 +1.9
585,349 - QEN71_RS32285 0.80 -0.6
585,454 - QEN71_RS32285 0.89 -0.6
585,473 + +0.7
585,474 - +0.6
585,522 + -0.7
585,685 + -3.5
585,686 - +0.9
585,734 - -0.3
585,734 - +0.0
585,772 + -0.7
585,773 - -0.4
585,776 - +1.0
585,776 - +0.3
585,842 - -0.1
585,997 + QEN71_RS32290 0.18 -0.7
585,997 + QEN71_RS32290 0.18 -1.6
585,997 + QEN71_RS32290 0.18 -1.3
585,997 + QEN71_RS32290 0.18 -0.7
585,998 - QEN71_RS32290 0.18 -0.2
585,998 - QEN71_RS32290 0.18 -0.1
586,070 + QEN71_RS32290 0.22 -1.5
586,070 + QEN71_RS32290 0.22 +1.1
586,071 - QEN71_RS32290 0.22 -0.0
586,071 - QEN71_RS32290 0.22 +0.1
586,071 - QEN71_RS32290 0.22 +1.0
586,192 + QEN71_RS32290 0.29 +0.1
586,193 - QEN71_RS32290 0.29 -0.9
586,340 + QEN71_RS32290 0.38 +0.6
586,417 + QEN71_RS32290 0.42 -0.1
586,418 - QEN71_RS32290 0.43 -0.5
586,418 - QEN71_RS32290 0.43 +0.3
586,418 - QEN71_RS32290 0.43 -1.1
586,511 - QEN71_RS32290 0.48 -0.4
586,567 + QEN71_RS32290 0.51 +0.5

Or see this region's nucleotide sequence