Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS26590

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS26585 and QEN71_RS26590 are separated by 9 nucleotidesQEN71_RS26590 and QEN71_RS26595 are separated by 117 nucleotidesQEN71_RS26595 and QEN71_RS26600 are separated by 14 nucleotides QEN71_RS26585: QEN71_RS26585 - glycolate oxidase subunit GlcE, at 5,935,134 to 5,936,222 _RS26585 QEN71_RS26590: QEN71_RS26590 - glycolate oxidase subunit GlcF, at 5,936,232 to 5,937,458 _RS26590 QEN71_RS26595: QEN71_RS26595 - YggS family pyridoxal phosphate-dependent enzyme, at 5,937,576 to 5,938,274 _RS26595 QEN71_RS26600: QEN71_RS26600 - pyrroline-5-carboxylate reductase, at 5,938,289 to 5,939,104 _RS26600 Position (kb) 5936 5937 5938Strain fitness (log2 ratio) -2 -1 0 1at 5935.237 kb on - strandat 5935.237 kb on - strandat 5935.237 kb on - strandat 5935.237 kb on - strandat 5935.296 kb on + strand, within QEN71_RS26585at 5935.296 kb on + strand, within QEN71_RS26585at 5935.296 kb on + strand, within QEN71_RS26585at 5935.296 kb on + strand, within QEN71_RS26585at 5935.297 kb on - strand, within QEN71_RS26585at 5935.627 kb on + strand, within QEN71_RS26585at 5935.628 kb on - strand, within QEN71_RS26585at 5936.038 kb on + strand, within QEN71_RS26585at 5936.038 kb on + strand, within QEN71_RS26585at 5936.038 kb on + strand, within QEN71_RS26585at 5936.038 kb on + strand, within QEN71_RS26585at 5936.039 kb on - strand, within QEN71_RS26585at 5936.097 kb on + strand, within QEN71_RS26585at 5936.098 kb on - strand, within QEN71_RS26585at 5936.098 kb on - strand, within QEN71_RS26585at 5936.098 kb on - strand, within QEN71_RS26585at 5936.098 kb on - strand, within QEN71_RS26585at 5936.098 kb on - strand, within QEN71_RS26585at 5936.116 kb on + strandat 5936.116 kb on + strandat 5936.116 kb on + strandat 5936.116 kb on + strandat 5936.116 kb on + strandat 5936.117 kb on - strandat 5936.117 kb on - strandat 5936.117 kb on - strandat 5936.117 kb on - strandat 5936.117 kb on - strandat 5936.208 kb on + strandat 5936.209 kb on - strandat 5936.343 kb on + strandat 5936.343 kb on + strandat 5936.343 kb on + strandat 5936.343 kb on + strandat 5936.343 kb on + strandat 5936.343 kb on + strandat 5936.344 kb on - strandat 5936.344 kb on - strandat 5936.344 kb on - strandat 5936.344 kb on - strandat 5936.344 kb on - strandat 5936.344 kb on - strandat 5936.344 kb on - strandat 5936.344 kb on - strandat 5936.344 kb on - strandat 5936.388 kb on + strand, within QEN71_RS26590at 5936.388 kb on + strand, within QEN71_RS26590at 5936.388 kb on + strand, within QEN71_RS26590at 5936.388 kb on + strand, within QEN71_RS26590at 5936.388 kb on + strand, within QEN71_RS26590at 5936.388 kb on + strand, within QEN71_RS26590at 5936.388 kb on + strand, within QEN71_RS26590at 5936.388 kb on + strand, within QEN71_RS26590at 5936.388 kb on + strand, within QEN71_RS26590at 5936.389 kb on - strand, within QEN71_RS26590at 5936.389 kb on - strand, within QEN71_RS26590at 5936.389 kb on - strand, within QEN71_RS26590at 5936.389 kb on - strand, within QEN71_RS26590at 5936.389 kb on - strand, within QEN71_RS26590at 5936.389 kb on - strand, within QEN71_RS26590at 5936.389 kb on - strand, within QEN71_RS26590at 5936.502 kb on + strand, within QEN71_RS26590at 5936.503 kb on - strand, within QEN71_RS26590at 5936.600 kb on - strand, within QEN71_RS26590at 5936.880 kb on + strand, within QEN71_RS26590at 5936.880 kb on + strand, within QEN71_RS26590at 5936.880 kb on + strand, within QEN71_RS26590at 5936.881 kb on - strand, within QEN71_RS26590at 5936.881 kb on - strand, within QEN71_RS26590at 5937.000 kb on + strand, within QEN71_RS26590at 5937.000 kb on + strand, within QEN71_RS26590at 5937.000 kb on + strand, within QEN71_RS26590at 5937.000 kb on + strand, within QEN71_RS26590at 5937.000 kb on + strand, within QEN71_RS26590at 5937.001 kb on - strand, within QEN71_RS26590at 5937.030 kb on + strand, within QEN71_RS26590at 5937.137 kb on + strand, within QEN71_RS26590at 5937.137 kb on + strand, within QEN71_RS26590at 5937.137 kb on + strand, within QEN71_RS26590at 5937.137 kb on + strand, within QEN71_RS26590at 5937.138 kb on - strand, within QEN71_RS26590at 5937.138 kb on - strand, within QEN71_RS26590at 5937.138 kb on - strand, within QEN71_RS26590at 5937.138 kb on - strand, within QEN71_RS26590at 5937.138 kb on - strand, within QEN71_RS26590at 5937.138 kb on - strand, within QEN71_RS26590at 5937.138 kb on - strand, within QEN71_RS26590at 5937.138 kb on - strand, within QEN71_RS26590at 5937.147 kb on + strand, within QEN71_RS26590at 5937.147 kb on + strand, within QEN71_RS26590at 5937.147 kb on + strand, within QEN71_RS26590at 5937.148 kb on - strand, within QEN71_RS26590at 5937.148 kb on - strand, within QEN71_RS26590at 5937.276 kb on + strand, within QEN71_RS26590at 5937.276 kb on + strand, within QEN71_RS26590at 5937.276 kb on + strand, within QEN71_RS26590at 5937.277 kb on - strand, within QEN71_RS26590at 5937.277 kb on - strand, within QEN71_RS26590at 5937.277 kb on - strand, within QEN71_RS26590at 5937.277 kb on - strand, within QEN71_RS26590at 5937.277 kb on - strand, within QEN71_RS26590at 5937.277 kb on - strand, within QEN71_RS26590at 5937.303 kb on + strand, within QEN71_RS26590at 5937.304 kb on - strand, within QEN71_RS26590at 5937.304 kb on - strand, within QEN71_RS26590at 5937.380 kb on + strandat 5937.380 kb on + strandat 5937.380 kb on + strandat 5937.380 kb on + strandat 5937.381 kb on - strandat 5937.381 kb on - strandat 5937.480 kb on + strandat 5937.481 kb on - strandat 5937.481 kb on - strandat 5937.481 kb on - strandat 5937.535 kb on + strandat 5937.535 kb on + strandat 5937.536 kb on - strandat 5937.536 kb on - strandat 5937.536 kb on - strandat 5937.536 kb on - strandat 5937.536 kb on - strandat 5937.536 kb on - strandat 5937.536 kb on - strandat 5937.537 kb on + strandat 5937.537 kb on + strandat 5937.537 kb on + strandat 5937.537 kb on + strandat 5937.538 kb on - strandat 5937.538 kb on - strandat 5937.538 kb on - strandat 5937.747 kb on + strand, within QEN71_RS26595at 5937.747 kb on + strand, within QEN71_RS26595at 5937.747 kb on + strand, within QEN71_RS26595at 5937.747 kb on + strand, within QEN71_RS26595at 5937.748 kb on - strand, within QEN71_RS26595at 5937.748 kb on - strand, within QEN71_RS26595at 5937.926 kb on + strand, within QEN71_RS26595at 5937.927 kb on - strand, within QEN71_RS26595at 5938.263 kb on + strandat 5938.264 kb on - strandat 5938.264 kb on - strandat 5938.264 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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5,935,237 - -0.1
5,935,237 - -0.1
5,935,237 - -0.6
5,935,237 - -0.1
5,935,296 + QEN71_RS26585 0.15 -0.6
5,935,296 + QEN71_RS26585 0.15 -0.9
5,935,296 + QEN71_RS26585 0.15 -0.2
5,935,296 + QEN71_RS26585 0.15 -0.1
5,935,297 - QEN71_RS26585 0.15 -0.4
5,935,627 + QEN71_RS26585 0.45 +1.1
5,935,628 - QEN71_RS26585 0.45 -0.9
5,936,038 + QEN71_RS26585 0.83 -0.4
5,936,038 + QEN71_RS26585 0.83 -0.4
5,936,038 + QEN71_RS26585 0.83 -0.9
5,936,038 + QEN71_RS26585 0.83 +0.2
5,936,039 - QEN71_RS26585 0.83 -0.1
5,936,097 + QEN71_RS26585 0.88 +0.4
5,936,098 - QEN71_RS26585 0.89 +0.9
5,936,098 - QEN71_RS26585 0.89 +0.3
5,936,098 - QEN71_RS26585 0.89 -0.6
5,936,098 - QEN71_RS26585 0.89 -0.1
5,936,098 - QEN71_RS26585 0.89 +0.5
5,936,116 + +1.1
5,936,116 + -0.1
5,936,116 + -0.3
5,936,116 + +0.1
5,936,116 + -0.7
5,936,117 - -0.5
5,936,117 - -2.3
5,936,117 - -0.3
5,936,117 - -1.1
5,936,117 - -2.2
5,936,208 + +0.4
5,936,209 - +0.2
5,936,343 + -0.0
5,936,343 + -1.4
5,936,343 + +1.1
5,936,343 + +0.3
5,936,343 + -1.1
5,936,343 + +0.9
5,936,344 - +1.2
5,936,344 - -0.2
5,936,344 - -0.7
5,936,344 - +0.0
5,936,344 - -0.6
5,936,344 - -0.1
5,936,344 - -1.1
5,936,344 - -0.2
5,936,344 - +0.8
5,936,388 + QEN71_RS26590 0.13 +1.5
5,936,388 + QEN71_RS26590 0.13 +1.3
5,936,388 + QEN71_RS26590 0.13 +0.5
5,936,388 + QEN71_RS26590 0.13 +0.7
5,936,388 + QEN71_RS26590 0.13 +0.2
5,936,388 + QEN71_RS26590 0.13 -0.0
5,936,388 + QEN71_RS26590 0.13 -0.5
5,936,388 + QEN71_RS26590 0.13 -1.0
5,936,388 + QEN71_RS26590 0.13 -0.6
5,936,389 - QEN71_RS26590 0.13 -0.0
5,936,389 - QEN71_RS26590 0.13 -0.3
5,936,389 - QEN71_RS26590 0.13 -1.4
5,936,389 - QEN71_RS26590 0.13 -1.1
5,936,389 - QEN71_RS26590 0.13 -0.0
5,936,389 - QEN71_RS26590 0.13 -0.3
5,936,389 - QEN71_RS26590 0.13 -0.3
5,936,502 + QEN71_RS26590 0.22 -0.4
5,936,503 - QEN71_RS26590 0.22 -0.2
5,936,600 - QEN71_RS26590 0.30 -2.3
5,936,880 + QEN71_RS26590 0.53 -0.6
5,936,880 + QEN71_RS26590 0.53 +1.3
5,936,880 + QEN71_RS26590 0.53 -0.6
5,936,881 - QEN71_RS26590 0.53 -0.0
5,936,881 - QEN71_RS26590 0.53 -1.0
5,937,000 + QEN71_RS26590 0.63 -1.8
5,937,000 + QEN71_RS26590 0.63 -0.3
5,937,000 + QEN71_RS26590 0.63 -0.1
5,937,000 + QEN71_RS26590 0.63 -0.3
5,937,000 + QEN71_RS26590 0.63 -0.6
5,937,001 - QEN71_RS26590 0.63 -0.7
5,937,030 + QEN71_RS26590 0.65 +0.7
5,937,137 + QEN71_RS26590 0.74 -0.1
5,937,137 + QEN71_RS26590 0.74 -0.1
5,937,137 + QEN71_RS26590 0.74 -0.8
5,937,137 + QEN71_RS26590 0.74 -0.9
5,937,138 - QEN71_RS26590 0.74 -0.0
5,937,138 - QEN71_RS26590 0.74 -0.4
5,937,138 - QEN71_RS26590 0.74 -2.0
5,937,138 - QEN71_RS26590 0.74 -1.6
5,937,138 - QEN71_RS26590 0.74 -0.9
5,937,138 - QEN71_RS26590 0.74 +0.3
5,937,138 - QEN71_RS26590 0.74 +0.3
5,937,138 - QEN71_RS26590 0.74 -0.2
5,937,147 + QEN71_RS26590 0.75 +0.3
5,937,147 + QEN71_RS26590 0.75 -0.8
5,937,147 + QEN71_RS26590 0.75 +0.7
5,937,148 - QEN71_RS26590 0.75 +0.7
5,937,148 - QEN71_RS26590 0.75 +0.1
5,937,276 + QEN71_RS26590 0.85 -0.9
5,937,276 + QEN71_RS26590 0.85 -0.4
5,937,276 + QEN71_RS26590 0.85 +1.7
5,937,277 - QEN71_RS26590 0.85 +0.1
5,937,277 - QEN71_RS26590 0.85 +1.5
5,937,277 - QEN71_RS26590 0.85 -1.4
5,937,277 - QEN71_RS26590 0.85 -0.4
5,937,277 - QEN71_RS26590 0.85 -0.1
5,937,277 - QEN71_RS26590 0.85 -0.9
5,937,303 + QEN71_RS26590 0.87 -0.3
5,937,304 - QEN71_RS26590 0.87 +0.0
5,937,304 - QEN71_RS26590 0.87 +0.4
5,937,380 + +0.2
5,937,380 + -0.6
5,937,380 + -0.1
5,937,380 + -0.1
5,937,381 - -0.1
5,937,381 - +0.1
5,937,480 + -1.2
5,937,481 - -0.1
5,937,481 - +0.7
5,937,481 - +1.5
5,937,535 + +0.3
5,937,535 + -0.1
5,937,536 - -0.3
5,937,536 - -0.4
5,937,536 - -0.4
5,937,536 - -0.4
5,937,536 - -0.4
5,937,536 - -0.3
5,937,536 - +0.5
5,937,537 + -0.4
5,937,537 + -1.7
5,937,537 + +0.6
5,937,537 + -0.7
5,937,538 - -2.6
5,937,538 - -1.5
5,937,538 - -2.2
5,937,747 + QEN71_RS26595 0.24 -0.1
5,937,747 + QEN71_RS26595 0.24 +0.4
5,937,747 + QEN71_RS26595 0.24 -0.2
5,937,747 + QEN71_RS26595 0.24 -1.0
5,937,748 - QEN71_RS26595 0.25 -0.9
5,937,748 - QEN71_RS26595 0.25 -2.1
5,937,926 + QEN71_RS26595 0.50 +0.7
5,937,927 - QEN71_RS26595 0.50 -0.9
5,938,263 + +0.1
5,938,264 - -1.6
5,938,264 - -0.8
5,938,264 - +0.7

Or see this region's nucleotide sequence