Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS17320

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS17315 and QEN71_RS17320 are separated by 223 nucleotidesQEN71_RS17320 and QEN71_RS17325 are separated by 38 nucleotides QEN71_RS17315: QEN71_RS17315 - polyhydroxyalkanoate depolymerase, at 3,841,988 to 3,843,370 _RS17315 QEN71_RS17320: QEN71_RS17320 - glutathione S-transferase family protein, at 3,843,594 to 3,844,244 _RS17320 QEN71_RS17325: QEN71_RS17325 - methyl-accepting chemotaxis protein, at 3,844,283 to 3,846,253 _RS17325 Position (kb) 3843 3844 3845Strain fitness (log2 ratio) -2 -1 0 1 2at 3842.966 kb on - strand, within QEN71_RS17315at 3842.967 kb on + strand, within QEN71_RS17315at 3842.967 kb on + strand, within QEN71_RS17315at 3842.967 kb on + strand, within QEN71_RS17315at 3842.967 kb on + strand, within QEN71_RS17315at 3842.967 kb on + strand, within QEN71_RS17315at 3842.967 kb on + strand, within QEN71_RS17315at 3842.968 kb on - strand, within QEN71_RS17315at 3842.968 kb on - strand, within QEN71_RS17315at 3842.968 kb on - strand, within QEN71_RS17315at 3842.968 kb on - strand, within QEN71_RS17315at 3842.968 kb on - strand, within QEN71_RS17315at 3842.968 kb on - strand, within QEN71_RS17315at 3842.968 kb on - strand, within QEN71_RS17315at 3842.968 kb on - strand, within QEN71_RS17315at 3843.264 kb on + strandat 3843.264 kb on + strandat 3843.265 kb on - strandat 3843.401 kb on + strandat 3843.402 kb on - strandat 3843.415 kb on + strandat 3843.416 kb on - strandat 3843.416 kb on - strandat 3843.416 kb on - strandat 3843.517 kb on + strandat 3843.618 kb on - strandat 3843.627 kb on + strandat 3843.627 kb on + strandat 3843.628 kb on - strandat 3843.628 kb on - strandat 3843.628 kb on - strandat 3843.628 kb on - strandat 3843.628 kb on - strandat 3843.751 kb on + strand, within QEN71_RS17320at 3843.751 kb on + strand, within QEN71_RS17320at 3843.752 kb on - strand, within QEN71_RS17320at 3843.752 kb on - strand, within QEN71_RS17320at 3843.780 kb on - strand, within QEN71_RS17320at 3843.813 kb on + strand, within QEN71_RS17320at 3843.813 kb on + strand, within QEN71_RS17320at 3843.970 kb on + strand, within QEN71_RS17320at 3843.970 kb on + strand, within QEN71_RS17320at 3843.970 kb on + strand, within QEN71_RS17320at 3843.971 kb on - strand, within QEN71_RS17320at 3844.001 kb on + strand, within QEN71_RS17320at 3844.002 kb on - strand, within QEN71_RS17320at 3844.002 kb on - strand, within QEN71_RS17320at 3844.035 kb on + strand, within QEN71_RS17320at 3844.035 kb on + strand, within QEN71_RS17320at 3844.047 kb on + strand, within QEN71_RS17320at 3844.048 kb on - strand, within QEN71_RS17320at 3844.048 kb on - strand, within QEN71_RS17320at 3844.083 kb on + strand, within QEN71_RS17320at 3844.083 kb on + strand, within QEN71_RS17320at 3844.083 kb on + strand, within QEN71_RS17320at 3844.083 kb on + strand, within QEN71_RS17320at 3844.083 kb on + strand, within QEN71_RS17320at 3844.083 kb on + strand, within QEN71_RS17320at 3844.083 kb on + strand, within QEN71_RS17320at 3844.083 kb on + strand, within QEN71_RS17320at 3844.083 kb on + strand, within QEN71_RS17320at 3844.084 kb on - strand, within QEN71_RS17320at 3844.084 kb on - strand, within QEN71_RS17320at 3844.084 kb on - strand, within QEN71_RS17320at 3844.084 kb on - strand, within QEN71_RS17320at 3844.110 kb on - strand, within QEN71_RS17320at 3844.110 kb on - strand, within QEN71_RS17320at 3844.110 kb on - strand, within QEN71_RS17320at 3844.113 kb on + strand, within QEN71_RS17320at 3844.113 kb on + strand, within QEN71_RS17320at 3844.113 kb on + strand, within QEN71_RS17320at 3844.114 kb on - strand, within QEN71_RS17320at 3844.114 kb on - strand, within QEN71_RS17320at 3844.146 kb on + strand, within QEN71_RS17320at 3844.284 kb on + strandat 3844.285 kb on - strandat 3844.285 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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3,842,966 - QEN71_RS17315 0.71 +0.4
3,842,967 + QEN71_RS17315 0.71 -0.7
3,842,967 + QEN71_RS17315 0.71 -0.2
3,842,967 + QEN71_RS17315 0.71 -1.9
3,842,967 + QEN71_RS17315 0.71 -0.6
3,842,967 + QEN71_RS17315 0.71 +0.9
3,842,967 + QEN71_RS17315 0.71 -0.1
3,842,968 - QEN71_RS17315 0.71 +0.0
3,842,968 - QEN71_RS17315 0.71 -0.6
3,842,968 - QEN71_RS17315 0.71 -0.0
3,842,968 - QEN71_RS17315 0.71 +0.1
3,842,968 - QEN71_RS17315 0.71 -0.7
3,842,968 - QEN71_RS17315 0.71 +1.0
3,842,968 - QEN71_RS17315 0.71 -0.7
3,842,968 - QEN71_RS17315 0.71 +0.1
3,843,264 + +0.8
3,843,264 + -0.1
3,843,265 - +2.5
3,843,401 + -0.8
3,843,402 - -1.3
3,843,415 + +0.9
3,843,416 - +0.9
3,843,416 - -0.1
3,843,416 - +0.5
3,843,517 + +0.2
3,843,618 - +0.3
3,843,627 + -0.4
3,843,627 + -0.2
3,843,628 - +0.1
3,843,628 - -0.6
3,843,628 - -0.5
3,843,628 - -0.4
3,843,628 - +0.9
3,843,751 + QEN71_RS17320 0.24 -0.7
3,843,751 + QEN71_RS17320 0.24 -1.6
3,843,752 - QEN71_RS17320 0.24 -0.7
3,843,752 - QEN71_RS17320 0.24 -1.6
3,843,780 - QEN71_RS17320 0.29 +0.9
3,843,813 + QEN71_RS17320 0.34 -0.7
3,843,813 + QEN71_RS17320 0.34 -0.6
3,843,970 + QEN71_RS17320 0.58 -0.7
3,843,970 + QEN71_RS17320 0.58 +0.2
3,843,970 + QEN71_RS17320 0.58 -0.2
3,843,971 - QEN71_RS17320 0.58 +0.5
3,844,001 + QEN71_RS17320 0.63 -0.5
3,844,002 - QEN71_RS17320 0.63 -0.5
3,844,002 - QEN71_RS17320 0.63 +0.3
3,844,035 + QEN71_RS17320 0.68 +0.1
3,844,035 + QEN71_RS17320 0.68 +0.6
3,844,047 + QEN71_RS17320 0.70 -1.5
3,844,048 - QEN71_RS17320 0.70 +0.6
3,844,048 - QEN71_RS17320 0.70 -0.1
3,844,083 + QEN71_RS17320 0.75 -1.2
3,844,083 + QEN71_RS17320 0.75 -0.2
3,844,083 + QEN71_RS17320 0.75 -0.1
3,844,083 + QEN71_RS17320 0.75 -1.0
3,844,083 + QEN71_RS17320 0.75 +0.1
3,844,083 + QEN71_RS17320 0.75 -1.6
3,844,083 + QEN71_RS17320 0.75 -0.9
3,844,083 + QEN71_RS17320 0.75 -0.1
3,844,083 + QEN71_RS17320 0.75 -0.2
3,844,084 - QEN71_RS17320 0.75 -0.1
3,844,084 - QEN71_RS17320 0.75 +0.5
3,844,084 - QEN71_RS17320 0.75 +1.1
3,844,084 - QEN71_RS17320 0.75 +1.1
3,844,110 - QEN71_RS17320 0.79 -0.1
3,844,110 - QEN71_RS17320 0.79 -0.4
3,844,110 - QEN71_RS17320 0.79 +0.2
3,844,113 + QEN71_RS17320 0.80 -1.3
3,844,113 + QEN71_RS17320 0.80 -0.3
3,844,113 + QEN71_RS17320 0.80 +1.3
3,844,114 - QEN71_RS17320 0.80 +0.9
3,844,114 - QEN71_RS17320 0.80 +0.6
3,844,146 + QEN71_RS17320 0.85 +0.1
3,844,284 + -0.7
3,844,285 - -0.0
3,844,285 - +0.5

Or see this region's nucleotide sequence