Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS04150

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS04145 and QEN71_RS04150 are separated by 31 nucleotidesQEN71_RS04150 and QEN71_RS04155 are separated by 6 nucleotides QEN71_RS04145: QEN71_RS04145 - histone deacetylase family protein, at 917,543 to 918,466 _RS04145 QEN71_RS04150: QEN71_RS04150 - enoyl-CoA hydratase, at 918,498 to 919,307 _RS04150 QEN71_RS04155: QEN71_RS04155 - alpha/beta hydrolase, at 919,314 to 920,192 _RS04155 Position (kb) 918 919 920Strain fitness (log2 ratio) -2 -1 0 1at 917.558 kb on + strandat 917.559 kb on - strandat 917.559 kb on - strandat 917.559 kb on - strandat 917.710 kb on - strand, within QEN71_RS04145at 917.710 kb on - strand, within QEN71_RS04145at 917.722 kb on + strand, within QEN71_RS04145at 917.722 kb on + strand, within QEN71_RS04145at 917.722 kb on + strand, within QEN71_RS04145at 917.722 kb on + strand, within QEN71_RS04145at 917.722 kb on + strand, within QEN71_RS04145at 917.723 kb on - strand, within QEN71_RS04145at 917.723 kb on - strand, within QEN71_RS04145at 917.741 kb on + strand, within QEN71_RS04145at 917.741 kb on + strand, within QEN71_RS04145at 917.741 kb on + strand, within QEN71_RS04145at 917.741 kb on + strand, within QEN71_RS04145at 917.742 kb on - strand, within QEN71_RS04145at 917.742 kb on - strand, within QEN71_RS04145at 917.742 kb on - strand, within QEN71_RS04145at 917.742 kb on - strand, within QEN71_RS04145at 918.044 kb on - strand, within QEN71_RS04145at 918.113 kb on + strand, within QEN71_RS04145at 918.114 kb on - strand, within QEN71_RS04145at 918.114 kb on - strand, within QEN71_RS04145at 918.114 kb on - strand, within QEN71_RS04145at 918.148 kb on + strand, within QEN71_RS04145at 918.148 kb on + strand, within QEN71_RS04145at 918.148 kb on + strand, within QEN71_RS04145at 918.149 kb on - strand, within QEN71_RS04145at 918.149 kb on - strand, within QEN71_RS04145at 918.149 kb on - strand, within QEN71_RS04145at 918.192 kb on + strand, within QEN71_RS04145at 918.193 kb on - strand, within QEN71_RS04145at 918.323 kb on + strand, within QEN71_RS04145at 918.323 kb on + strand, within QEN71_RS04145at 918.323 kb on + strand, within QEN71_RS04145at 918.323 kb on + strand, within QEN71_RS04145at 918.323 kb on + strand, within QEN71_RS04145at 918.323 kb on + strand, within QEN71_RS04145at 918.323 kb on + strand, within QEN71_RS04145at 918.324 kb on - strand, within QEN71_RS04145at 918.324 kb on - strand, within QEN71_RS04145at 918.324 kb on - strand, within QEN71_RS04145at 918.324 kb on - strand, within QEN71_RS04145at 918.324 kb on - strand, within QEN71_RS04145at 918.324 kb on - strand, within QEN71_RS04145at 918.324 kb on - strand, within QEN71_RS04145at 918.324 kb on - strand, within QEN71_RS04145at 918.324 kb on - strand, within QEN71_RS04145at 918.365 kb on + strand, within QEN71_RS04145at 918.365 kb on + strand, within QEN71_RS04145at 918.366 kb on - strand, within QEN71_RS04145at 918.366 kb on - strand, within QEN71_RS04145at 918.404 kb on + strandat 918.404 kb on + strandat 918.404 kb on + strandat 918.404 kb on + strandat 918.404 kb on + strandat 918.405 kb on - strandat 918.405 kb on - strandat 918.405 kb on - strandat 918.405 kb on - strandat 918.405 kb on - strandat 918.405 kb on - strandat 918.496 kb on + strandat 918.497 kb on + strandat 918.497 kb on + strandat 918.497 kb on + strandat 918.497 kb on + strandat 918.497 kb on + strandat 918.497 kb on + strandat 918.497 kb on + strandat 918.497 kb on + strandat 918.497 kb on + strandat 918.497 kb on + strandat 918.497 kb on + strandat 918.497 kb on + strandat 918.498 kb on - strandat 918.498 kb on - strandat 918.498 kb on - strandat 918.498 kb on - strandat 918.498 kb on - strandat 918.498 kb on - strandat 918.498 kb on - strandat 918.498 kb on - strandat 918.498 kb on - strandat 918.498 kb on - strandat 918.498 kb on - strandat 918.498 kb on - strandat 918.498 kb on - strandat 918.546 kb on + strandat 918.546 kb on + strandat 918.546 kb on + strandat 918.546 kb on + strandat 918.546 kb on + strandat 918.547 kb on - strandat 918.547 kb on - strandat 918.547 kb on - strandat 918.547 kb on - strandat 918.547 kb on - strandat 918.750 kb on + strand, within QEN71_RS04150at 918.750 kb on + strand, within QEN71_RS04150at 918.750 kb on + strand, within QEN71_RS04150at 918.750 kb on + strand, within QEN71_RS04150at 918.750 kb on + strand, within QEN71_RS04150at 918.750 kb on + strand, within QEN71_RS04150at 918.751 kb on - strand, within QEN71_RS04150at 918.751 kb on - strand, within QEN71_RS04150at 918.753 kb on + strand, within QEN71_RS04150at 918.753 kb on + strand, within QEN71_RS04150at 918.753 kb on + strand, within QEN71_RS04150at 918.754 kb on - strand, within QEN71_RS04150at 918.754 kb on - strand, within QEN71_RS04150at 918.754 kb on - strand, within QEN71_RS04150at 919.158 kb on + strand, within QEN71_RS04150at 919.158 kb on + strand, within QEN71_RS04150at 919.159 kb on - strand, within QEN71_RS04150at 919.180 kb on + strand, within QEN71_RS04150at 919.180 kb on + strand, within QEN71_RS04150at 919.181 kb on - strand, within QEN71_RS04150at 919.181 kb on - strand, within QEN71_RS04150at 919.181 kb on - strand, within QEN71_RS04150at 919.181 kb on - strand, within QEN71_RS04150at 919.191 kb on + strand, within QEN71_RS04150at 919.192 kb on - strand, within QEN71_RS04150at 919.192 kb on - strand, within QEN71_RS04150at 919.192 kb on - strand, within QEN71_RS04150at 919.192 kb on - strand, within QEN71_RS04150at 919.393 kb on + strandat 919.393 kb on + strandat 919.393 kb on + strandat 919.394 kb on - strandat 919.394 kb on - strandat 919.394 kb on - strandat 919.394 kb on - strandat 919.405 kb on + strand, within QEN71_RS04155at 919.405 kb on + strand, within QEN71_RS04155at 919.405 kb on + strand, within QEN71_RS04155at 919.405 kb on + strand, within QEN71_RS04155at 919.405 kb on + strand, within QEN71_RS04155at 919.405 kb on + strand, within QEN71_RS04155at 919.405 kb on + strand, within QEN71_RS04155at 919.406 kb on - strand, within QEN71_RS04155at 919.406 kb on - strand, within QEN71_RS04155at 919.406 kb on - strand, within QEN71_RS04155at 919.406 kb on - strand, within QEN71_RS04155at 919.912 kb on + strand, within QEN71_RS04155at 919.912 kb on + strand, within QEN71_RS04155at 919.913 kb on - strand, within QEN71_RS04155at 919.913 kb on - strand, within QEN71_RS04155at 919.913 kb on - strand, within QEN71_RS04155at 920.101 kb on + strand, within QEN71_RS04155at 920.101 kb on + strand, within QEN71_RS04155at 920.101 kb on + strand, within QEN71_RS04155at 920.102 kb on - strand, within QEN71_RS04155at 920.192 kb on + strandat 920.193 kb on - strandat 920.208 kb on + strandat 920.209 kb on - strandat 920.211 kb on + strandat 920.211 kb on + strandat 920.211 kb on + strandat 920.211 kb on + strandat 920.212 kb on - strandat 920.231 kb on + strandat 920.231 kb on + strandat 920.232 kb on - strandat 920.232 kb on - strandat 920.280 kb on + strandat 920.281 kb on - strandat 920.295 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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917,558 + -0.7
917,559 - +0.2
917,559 - +0.5
917,559 - -0.6
917,710 - QEN71_RS04145 0.18 -0.2
917,710 - QEN71_RS04145 0.18 +0.5
917,722 + QEN71_RS04145 0.19 +1.0
917,722 + QEN71_RS04145 0.19 -0.0
917,722 + QEN71_RS04145 0.19 -0.4
917,722 + QEN71_RS04145 0.19 +0.2
917,722 + QEN71_RS04145 0.19 -0.2
917,723 - QEN71_RS04145 0.19 -1.0
917,723 - QEN71_RS04145 0.19 +0.2
917,741 + QEN71_RS04145 0.21 +1.2
917,741 + QEN71_RS04145 0.21 -0.5
917,741 + QEN71_RS04145 0.21 -1.6
917,741 + QEN71_RS04145 0.21 -0.1
917,742 - QEN71_RS04145 0.22 +0.9
917,742 - QEN71_RS04145 0.22 +0.4
917,742 - QEN71_RS04145 0.22 +0.7
917,742 - QEN71_RS04145 0.22 +0.5
918,044 - QEN71_RS04145 0.54 +0.4
918,113 + QEN71_RS04145 0.62 -0.5
918,114 - QEN71_RS04145 0.62 -0.7
918,114 - QEN71_RS04145 0.62 -1.2
918,114 - QEN71_RS04145 0.62 -0.8
918,148 + QEN71_RS04145 0.65 -1.0
918,148 + QEN71_RS04145 0.65 +0.7
918,148 + QEN71_RS04145 0.65 +0.4
918,149 - QEN71_RS04145 0.66 +0.5
918,149 - QEN71_RS04145 0.66 -0.1
918,149 - QEN71_RS04145 0.66 +0.3
918,192 + QEN71_RS04145 0.70 +0.3
918,193 - QEN71_RS04145 0.70 -0.3
918,323 + QEN71_RS04145 0.84 -0.9
918,323 + QEN71_RS04145 0.84 +0.2
918,323 + QEN71_RS04145 0.84 -0.1
918,323 + QEN71_RS04145 0.84 +0.1
918,323 + QEN71_RS04145 0.84 +0.6
918,323 + QEN71_RS04145 0.84 +0.6
918,323 + QEN71_RS04145 0.84 -0.1
918,324 - QEN71_RS04145 0.85 -0.5
918,324 - QEN71_RS04145 0.85 +1.1
918,324 - QEN71_RS04145 0.85 +0.3
918,324 - QEN71_RS04145 0.85 +0.4
918,324 - QEN71_RS04145 0.85 -0.0
918,324 - QEN71_RS04145 0.85 +0.1
918,324 - QEN71_RS04145 0.85 +0.3
918,324 - QEN71_RS04145 0.85 +0.4
918,324 - QEN71_RS04145 0.85 -0.7
918,365 + QEN71_RS04145 0.89 -0.5
918,365 + QEN71_RS04145 0.89 -0.3
918,366 - QEN71_RS04145 0.89 +0.7
918,366 - QEN71_RS04145 0.89 -1.0
918,404 + +0.5
918,404 + +1.0
918,404 + +0.5
918,404 + +0.8
918,404 + +0.8
918,405 - -0.4
918,405 - -2.2
918,405 - +0.4
918,405 - -1.5
918,405 - -0.1
918,405 - +0.5
918,496 + +0.3
918,497 + -0.3
918,497 + +0.5
918,497 + -0.7
918,497 + +0.6
918,497 + +0.8
918,497 + -1.6
918,497 + -0.5
918,497 + +0.1
918,497 + -1.0
918,497 + +1.0
918,497 + +0.8
918,497 + -0.2
918,498 - +1.2
918,498 - +0.3
918,498 - -0.9
918,498 - -0.7
918,498 - +0.8
918,498 - -0.5
918,498 - +0.3
918,498 - -0.6
918,498 - +1.5
918,498 - -0.4
918,498 - -0.7
918,498 - +0.4
918,498 - -1.2
918,546 + -0.2
918,546 + -0.3
918,546 + -1.4
918,546 + -0.2
918,546 + -0.3
918,547 - -0.7
918,547 - +0.4
918,547 - +1.3
918,547 - -0.3
918,547 - +0.8
918,750 + QEN71_RS04150 0.31 -0.7
918,750 + QEN71_RS04150 0.31 -0.5
918,750 + QEN71_RS04150 0.31 -1.6
918,750 + QEN71_RS04150 0.31 -2.1
918,750 + QEN71_RS04150 0.31 +0.6
918,750 + QEN71_RS04150 0.31 +0.3
918,751 - QEN71_RS04150 0.31 +0.0
918,751 - QEN71_RS04150 0.31 -0.8
918,753 + QEN71_RS04150 0.31 +0.0
918,753 + QEN71_RS04150 0.31 +0.5
918,753 + QEN71_RS04150 0.31 -0.4
918,754 - QEN71_RS04150 0.32 -0.3
918,754 - QEN71_RS04150 0.32 +0.5
918,754 - QEN71_RS04150 0.32 -0.3
919,158 + QEN71_RS04150 0.81 +1.5
919,158 + QEN71_RS04150 0.81 -0.4
919,159 - QEN71_RS04150 0.82 -1.1
919,180 + QEN71_RS04150 0.84 -0.7
919,180 + QEN71_RS04150 0.84 +0.3
919,181 - QEN71_RS04150 0.84 -1.2
919,181 - QEN71_RS04150 0.84 +1.5
919,181 - QEN71_RS04150 0.84 +0.0
919,181 - QEN71_RS04150 0.84 +1.1
919,191 + QEN71_RS04150 0.86 -2.5
919,192 - QEN71_RS04150 0.86 -0.7
919,192 - QEN71_RS04150 0.86 +0.9
919,192 - QEN71_RS04150 0.86 -0.7
919,192 - QEN71_RS04150 0.86 -0.8
919,393 + -0.7
919,393 + -0.3
919,393 + -0.2
919,394 - -2.2
919,394 - -0.9
919,394 - -0.4
919,394 - -0.5
919,405 + QEN71_RS04155 0.10 -0.5
919,405 + QEN71_RS04155 0.10 +0.4
919,405 + QEN71_RS04155 0.10 +0.1
919,405 + QEN71_RS04155 0.10 -1.9
919,405 + QEN71_RS04155 0.10 -1.1
919,405 + QEN71_RS04155 0.10 -0.5
919,405 + QEN71_RS04155 0.10 +0.3
919,406 - QEN71_RS04155 0.10 -0.3
919,406 - QEN71_RS04155 0.10 +0.5
919,406 - QEN71_RS04155 0.10 +0.8
919,406 - QEN71_RS04155 0.10 +0.0
919,912 + QEN71_RS04155 0.68 +0.8
919,912 + QEN71_RS04155 0.68 +0.2
919,913 - QEN71_RS04155 0.68 +0.2
919,913 - QEN71_RS04155 0.68 -1.0
919,913 - QEN71_RS04155 0.68 -1.6
920,101 + QEN71_RS04155 0.90 +0.6
920,101 + QEN71_RS04155 0.90 -0.2
920,101 + QEN71_RS04155 0.90 +0.3
920,102 - QEN71_RS04155 0.90 +0.3
920,192 + -0.2
920,193 - +1.1
920,208 + -0.9
920,209 - -0.1
920,211 + -0.6
920,211 + -0.9
920,211 + -0.2
920,211 + -0.8
920,212 - +1.4
920,231 + +1.0
920,231 + -0.1
920,232 - -1.3
920,232 - +0.8
920,280 + -0.5
920,281 - -0.1
920,295 - +0.1

Or see this region's nucleotide sequence