Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS02805

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS02800 and QEN71_RS02805 are separated by 5 nucleotidesQEN71_RS02805 and QEN71_RS02810 are separated by 82 nucleotides QEN71_RS02800: QEN71_RS02800 - murein biosynthesis integral membrane protein MurJ, at 626,073 to 627,623 _RS02800 QEN71_RS02805: QEN71_RS02805 - SirB1 family protein, at 627,629 to 628,471 _RS02805 QEN71_RS02810: QEN71_RS02810 - 3-hydroxyacyl-CoA dehydrogenase, at 628,554 to 629,312 _RS02810 Position (kb) 627 628 629Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 627.594 kb on + strandat 627.594 kb on + strandat 627.594 kb on + strandat 627.594 kb on + strandat 627.594 kb on + strandat 627.594 kb on + strandat 627.595 kb on - strandat 627.595 kb on - strandat 627.595 kb on - strandat 627.595 kb on - strandat 627.595 kb on - strandat 627.595 kb on - strandat 627.595 kb on - strandat 627.595 kb on - strandat 627.600 kb on + strandat 627.601 kb on - strandat 627.601 kb on - strandat 627.601 kb on - strandat 627.647 kb on + strandat 627.648 kb on - strandat 627.723 kb on - strand, within QEN71_RS02805at 627.736 kb on + strand, within QEN71_RS02805at 627.839 kb on + strand, within QEN71_RS02805at 627.840 kb on - strand, within QEN71_RS02805at 627.840 kb on - strand, within QEN71_RS02805at 627.840 kb on - strand, within QEN71_RS02805at 627.840 kb on - strand, within QEN71_RS02805at 627.840 kb on - strand, within QEN71_RS02805at 627.881 kb on + strand, within QEN71_RS02805at 627.881 kb on + strand, within QEN71_RS02805at 627.881 kb on + strand, within QEN71_RS02805at 627.881 kb on + strand, within QEN71_RS02805at 627.881 kb on + strand, within QEN71_RS02805at 627.882 kb on - strand, within QEN71_RS02805at 627.884 kb on + strand, within QEN71_RS02805at 627.884 kb on + strand, within QEN71_RS02805at 627.884 kb on + strand, within QEN71_RS02805at 627.884 kb on + strand, within QEN71_RS02805at 627.884 kb on + strand, within QEN71_RS02805at 627.885 kb on - strand, within QEN71_RS02805at 627.885 kb on - strand, within QEN71_RS02805at 627.885 kb on - strand, within QEN71_RS02805at 627.885 kb on - strand, within QEN71_RS02805at 627.885 kb on - strand, within QEN71_RS02805at 627.885 kb on - strand, within QEN71_RS02805at 627.885 kb on - strand, within QEN71_RS02805at 627.885 kb on - strand, within QEN71_RS02805at 627.885 kb on - strand, within QEN71_RS02805at 627.959 kb on + strand, within QEN71_RS02805at 627.959 kb on + strand, within QEN71_RS02805at 627.959 kb on + strand, within QEN71_RS02805at 627.959 kb on + strand, within QEN71_RS02805at 627.960 kb on - strand, within QEN71_RS02805at 627.960 kb on - strand, within QEN71_RS02805at 627.960 kb on - strand, within QEN71_RS02805at 627.985 kb on + strand, within QEN71_RS02805at 627.986 kb on - strand, within QEN71_RS02805at 627.986 kb on - strand, within QEN71_RS02805at 628.118 kb on + strand, within QEN71_RS02805at 628.118 kb on + strand, within QEN71_RS02805at 628.118 kb on + strand, within QEN71_RS02805at 628.118 kb on + strand, within QEN71_RS02805at 628.118 kb on + strand, within QEN71_RS02805at 628.118 kb on + strand, within QEN71_RS02805at 628.118 kb on + strand, within QEN71_RS02805at 628.119 kb on - strand, within QEN71_RS02805at 628.119 kb on - strand, within QEN71_RS02805at 628.119 kb on - strand, within QEN71_RS02805at 628.119 kb on - strand, within QEN71_RS02805at 628.119 kb on - strand, within QEN71_RS02805at 628.119 kb on - strand, within QEN71_RS02805at 628.119 kb on - strand, within QEN71_RS02805at 628.119 kb on - strand, within QEN71_RS02805at 628.119 kb on - strand, within QEN71_RS02805at 628.226 kb on + strand, within QEN71_RS02805at 628.226 kb on + strand, within QEN71_RS02805at 628.226 kb on + strand, within QEN71_RS02805at 628.226 kb on + strand, within QEN71_RS02805at 628.226 kb on + strand, within QEN71_RS02805at 628.226 kb on + strand, within QEN71_RS02805at 628.226 kb on + strand, within QEN71_RS02805at 628.226 kb on + strand, within QEN71_RS02805at 628.226 kb on + strand, within QEN71_RS02805at 628.227 kb on - strand, within QEN71_RS02805at 628.227 kb on - strand, within QEN71_RS02805at 628.227 kb on - strand, within QEN71_RS02805at 628.329 kb on - strand, within QEN71_RS02805at 628.329 kb on - strand, within QEN71_RS02805at 628.329 kb on - strand, within QEN71_RS02805at 628.343 kb on + strand, within QEN71_RS02805at 628.343 kb on + strand, within QEN71_RS02805at 628.343 kb on + strand, within QEN71_RS02805at 628.343 kb on + strand, within QEN71_RS02805at 628.343 kb on + strand, within QEN71_RS02805at 628.343 kb on + strand, within QEN71_RS02805at 628.344 kb on - strand, within QEN71_RS02805at 628.344 kb on - strand, within QEN71_RS02805at 628.344 kb on - strand, within QEN71_RS02805at 628.344 kb on - strand, within QEN71_RS02805at 628.376 kb on + strand, within QEN71_RS02805at 628.376 kb on + strand, within QEN71_RS02805at 628.376 kb on + strand, within QEN71_RS02805at 628.377 kb on - strand, within QEN71_RS02805at 628.377 kb on - strand, within QEN71_RS02805at 628.506 kb on - strandat 628.506 kb on - strandat 628.506 kb on - strandat 628.506 kb on - strandat 628.506 kb on - strandat 628.506 kb on - strandat 628.506 kb on - strandat 628.513 kb on + strandat 628.513 kb on + strandat 628.513 kb on + strandat 628.514 kb on - strandat 628.514 kb on - strandat 628.514 kb on - strandat 628.514 kb on - strandat 628.514 kb on - strandat 628.555 kb on + strandat 628.555 kb on + strandat 628.555 kb on + strandat 628.555 kb on + strandat 628.556 kb on - strandat 628.645 kb on + strand, within QEN71_RS02810at 628.645 kb on + strand, within QEN71_RS02810at 628.645 kb on + strand, within QEN71_RS02810at 628.646 kb on - strand, within QEN71_RS02810at 628.646 kb on - strand, within QEN71_RS02810at 628.646 kb on - strand, within QEN71_RS02810at 628.840 kb on + strand, within QEN71_RS02810at 628.840 kb on + strand, within QEN71_RS02810at 628.841 kb on - strand, within QEN71_RS02810at 628.841 kb on - strand, within QEN71_RS02810at 629.374 kb on - strandat 629.412 kb on + strandat 629.412 kb on + strandat 629.413 kb on - strandat 629.413 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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627,594 + +0.3
627,594 + -0.2
627,594 + -2.0
627,594 + +0.4
627,594 + +0.4
627,594 + -0.1
627,595 - -0.1
627,595 - -0.5
627,595 - +0.1
627,595 - +0.6
627,595 - -0.6
627,595 - -1.6
627,595 - -1.2
627,595 - +0.3
627,600 + +0.1
627,601 - +0.3
627,601 - +0.0
627,601 - -0.1
627,647 + +1.0
627,648 - +2.3
627,723 - QEN71_RS02805 0.11 +0.5
627,736 + QEN71_RS02805 0.13 -0.6
627,839 + QEN71_RS02805 0.25 +0.4
627,840 - QEN71_RS02805 0.25 +0.4
627,840 - QEN71_RS02805 0.25 -0.4
627,840 - QEN71_RS02805 0.25 +0.3
627,840 - QEN71_RS02805 0.25 +0.7
627,840 - QEN71_RS02805 0.25 -0.1
627,881 + QEN71_RS02805 0.30 +0.6
627,881 + QEN71_RS02805 0.30 +1.3
627,881 + QEN71_RS02805 0.30 -1.8
627,881 + QEN71_RS02805 0.30 -0.9
627,881 + QEN71_RS02805 0.30 -0.7
627,882 - QEN71_RS02805 0.30 -0.3
627,884 + QEN71_RS02805 0.30 +1.1
627,884 + QEN71_RS02805 0.30 +0.3
627,884 + QEN71_RS02805 0.30 -0.4
627,884 + QEN71_RS02805 0.30 -0.8
627,884 + QEN71_RS02805 0.30 +0.1
627,885 - QEN71_RS02805 0.30 -0.5
627,885 - QEN71_RS02805 0.30 +0.4
627,885 - QEN71_RS02805 0.30 -0.1
627,885 - QEN71_RS02805 0.30 +1.6
627,885 - QEN71_RS02805 0.30 -2.8
627,885 - QEN71_RS02805 0.30 -0.4
627,885 - QEN71_RS02805 0.30 -0.7
627,885 - QEN71_RS02805 0.30 +0.5
627,885 - QEN71_RS02805 0.30 -0.3
627,959 + QEN71_RS02805 0.39 +0.7
627,959 + QEN71_RS02805 0.39 +0.4
627,959 + QEN71_RS02805 0.39 +0.0
627,959 + QEN71_RS02805 0.39 -0.3
627,960 - QEN71_RS02805 0.39 -0.1
627,960 - QEN71_RS02805 0.39 +0.1
627,960 - QEN71_RS02805 0.39 -0.0
627,985 + QEN71_RS02805 0.42 -1.1
627,986 - QEN71_RS02805 0.42 +0.5
627,986 - QEN71_RS02805 0.42 +0.3
628,118 + QEN71_RS02805 0.58 -0.1
628,118 + QEN71_RS02805 0.58 +1.6
628,118 + QEN71_RS02805 0.58 -0.4
628,118 + QEN71_RS02805 0.58 +0.1
628,118 + QEN71_RS02805 0.58 -0.2
628,118 + QEN71_RS02805 0.58 -0.5
628,118 + QEN71_RS02805 0.58 +0.4
628,119 - QEN71_RS02805 0.58 +0.0
628,119 - QEN71_RS02805 0.58 +1.1
628,119 - QEN71_RS02805 0.58 +0.2
628,119 - QEN71_RS02805 0.58 -1.3
628,119 - QEN71_RS02805 0.58 -0.3
628,119 - QEN71_RS02805 0.58 +0.1
628,119 - QEN71_RS02805 0.58 +1.4
628,119 - QEN71_RS02805 0.58 -0.4
628,119 - QEN71_RS02805 0.58 +0.2
628,226 + QEN71_RS02805 0.71 -1.7
628,226 + QEN71_RS02805 0.71 -0.3
628,226 + QEN71_RS02805 0.71 +1.5
628,226 + QEN71_RS02805 0.71 +0.5
628,226 + QEN71_RS02805 0.71 -1.1
628,226 + QEN71_RS02805 0.71 +0.2
628,226 + QEN71_RS02805 0.71 -1.2
628,226 + QEN71_RS02805 0.71 +0.1
628,226 + QEN71_RS02805 0.71 +0.0
628,227 - QEN71_RS02805 0.71 -1.0
628,227 - QEN71_RS02805 0.71 -1.1
628,227 - QEN71_RS02805 0.71 -1.9
628,329 - QEN71_RS02805 0.83 -0.1
628,329 - QEN71_RS02805 0.83 -0.4
628,329 - QEN71_RS02805 0.83 -0.4
628,343 + QEN71_RS02805 0.85 -1.2
628,343 + QEN71_RS02805 0.85 -0.3
628,343 + QEN71_RS02805 0.85 +0.2
628,343 + QEN71_RS02805 0.85 +0.3
628,343 + QEN71_RS02805 0.85 -0.7
628,343 + QEN71_RS02805 0.85 +0.0
628,344 - QEN71_RS02805 0.85 +0.0
628,344 - QEN71_RS02805 0.85 -0.7
628,344 - QEN71_RS02805 0.85 -1.6
628,344 - QEN71_RS02805 0.85 +0.6
628,376 + QEN71_RS02805 0.89 -0.1
628,376 + QEN71_RS02805 0.89 -0.8
628,376 + QEN71_RS02805 0.89 -0.7
628,377 - QEN71_RS02805 0.89 -2.6
628,377 - QEN71_RS02805 0.89 -0.3
628,506 - +0.9
628,506 - -0.4
628,506 - +0.8
628,506 - -0.9
628,506 - +0.3
628,506 - +0.2
628,506 - +1.1
628,513 + +0.5
628,513 + +1.6
628,513 + +1.4
628,514 - +0.5
628,514 - -1.3
628,514 - -0.6
628,514 - -1.2
628,514 - -0.9
628,555 + -1.6
628,555 + +0.4
628,555 + +0.6
628,555 + -1.6
628,556 - +0.3
628,645 + QEN71_RS02810 0.12 -0.9
628,645 + QEN71_RS02810 0.12 +0.3
628,645 + QEN71_RS02810 0.12 +0.3
628,646 - QEN71_RS02810 0.12 +0.7
628,646 - QEN71_RS02810 0.12 -2.1
628,646 - QEN71_RS02810 0.12 -0.4
628,840 + QEN71_RS02810 0.38 +0.4
628,840 + QEN71_RS02810 0.38 -0.2
628,841 - QEN71_RS02810 0.38 +0.2
628,841 - QEN71_RS02810 0.38 +0.4
629,374 - +0.9
629,412 + +0.0
629,412 + -0.9
629,413 - +1.6
629,413 - -0.3

Or see this region's nucleotide sequence