Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04104

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 4
4,606,107	+		MIT1002_04103	0.18	-2.8
4,606,115	-		MIT1002_04103	0.19	-5.0
4,606,122	+		MIT1002_04103	0.20	-1.6
4,606,170	+		MIT1002_04103	0.24	-0.7
4,606,196	+		MIT1002_04103	0.27	-1.8
4,606,214	+		MIT1002_04103	0.29	-3.9
4,606,222	-		MIT1002_04103	0.30	-3.7
4,606,323	+		MIT1002_04103	0.40	-3.5
4,606,374	-		MIT1002_04103	0.45	+0.8
4,606,384	+		MIT1002_04103	0.46	-3.5
4,606,478	-		MIT1002_04103	0.55	-2.5
4,606,499	+		MIT1002_04103	0.57	-2.5
4,606,499	+		MIT1002_04103	0.57	-3.1
4,606,539	-		MIT1002_04103	0.61	-1.1
4,606,541	+		MIT1002_04103	0.61	-1.4
4,606,549	-		MIT1002_04103	0.62	-2.0
4,606,643	+		MIT1002_04103	0.72	-2.9
4,606,643	+		MIT1002_04103	0.72	-1.5
4,606,643	+		MIT1002_04103	0.72	-3.3
4,606,643	+		MIT1002_04103	0.72	-1.3
4,606,643	+		MIT1002_04103	0.72	-2.4
4,606,643	+		MIT1002_04103	0.72	-2.3
4,606,643	+		MIT1002_04103	0.72	-2.8
4,606,651	-		MIT1002_04103	0.72	-0.8
4,606,651	-		MIT1002_04103	0.72	-0.5
4,606,651	-		MIT1002_04103	0.72	-0.7
4,606,651	-		MIT1002_04103	0.72	-1.3
4,606,651	-		MIT1002_04103	0.72	-3.0
4,606,651	-		MIT1002_04103	0.72	-0.4
4,606,651	-		MIT1002_04103	0.72	-0.4
4,606,651	-		MIT1002_04103	0.72	-1.8
4,606,651	-		MIT1002_04103	0.72	-1.7
4,606,651	-		MIT1002_04103	0.72	-4.3
4,606,679	+		MIT1002_04103	0.75	-3.0
4,606,679	+		MIT1002_04103	0.75	-1.0
4,606,827	+				-0.1
4,606,835	-				-2.2
4,606,852	-				-2.9
4,606,855	+				-2.5
4,606,855	+				-2.2
4,606,873	-				-2.8
4,606,895	+				+1.5
4,606,895	+				-3.6
4,606,903	-				-1.6
4,606,903	-				+0.3
4,606,916	+				-0.1
4,606,923	+				-0.3
4,607,024	-				+0.6
4,607,042	+				+0.4
4,607,042	+				+1.0
4,607,082	+				+1.0
4,607,119	+				+1.8
4,607,229	+		MIT1002_04104	0.14	-4.1
4,607,229	+		MIT1002_04104	0.14	+1.4
4,607,292	+		MIT1002_04104	0.19	+0.8
4,607,300	-		MIT1002_04104	0.20	+2.5
4,607,300	-		MIT1002_04104	0.20	+0.6
4,607,332	-		MIT1002_04104	0.23	-0.6
4,607,425	+		MIT1002_04104	0.31	+1.5
4,607,433	-		MIT1002_04104	0.31	+0.2
4,607,546	-		MIT1002_04104	0.41	-0.1
4,607,582	+		MIT1002_04104	0.44	-0.3
4,607,604	+		MIT1002_04104	0.46	-1.7
4,607,604	+		MIT1002_04104	0.46	+0.1
4,607,604	+		MIT1002_04104	0.46	-0.8
4,607,604	+		MIT1002_04104	0.46	-0.7
4,607,604	+		MIT1002_04104	0.46	-0.2
4,607,604	+		MIT1002_04104	0.46	-0.1
4,607,604	+		MIT1002_04104	0.46	+0.2
4,607,604	-		MIT1002_04104	0.46	-0.4
4,607,607	-		MIT1002_04104	0.46	-0.3
4,607,612	-		MIT1002_04104	0.46	+0.5
4,607,612	-		MIT1002_04104	0.46	-0.5
4,607,612	-		MIT1002_04104	0.46	+0.9
4,607,612	-		MIT1002_04104	0.46	-1.4
4,607,612	-		MIT1002_04104	0.46	-0.1
4,607,612	-		MIT1002_04104	0.46	+0.0
4,607,612	-		MIT1002_04104	0.46	+0.5
4,607,612	-		MIT1002_04104	0.46	-0.6
4,607,612	-		MIT1002_04104	0.46	-1.1
4,607,612	-		MIT1002_04104	0.46	+1.7
4,607,612	-		MIT1002_04104	0.46	+0.3
4,607,612	-		MIT1002_04104	0.46	+0.9
4,607,612	-		MIT1002_04104	0.46	+0.4
4,607,612	-		MIT1002_04104	0.46	-0.8
4,607,612	-		MIT1002_04104	0.46	+0.8
4,607,612	-		MIT1002_04104	0.46	+1.1
4,607,612	-		MIT1002_04104	0.46	-2.7
4,607,612	-		MIT1002_04104	0.46	-0.7
4,607,646	+		MIT1002_04104	0.49	+1.7
4,607,655	-		MIT1002_04104	0.50	+0.3
4,607,688	+		MIT1002_04104	0.53	+0.6
4,607,691	-		MIT1002_04104	0.53	+0.3
4,607,696	-		MIT1002_04104	0.54	+1.9
4,607,701	-		MIT1002_04104	0.54	-2.4
4,607,771	+		MIT1002_04104	0.60	-1.0
4,607,798	+		MIT1002_04104	0.62	+0.9
4,607,812	+		MIT1002_04104	0.64	-0.1
4,607,835	-		MIT1002_04104	0.66	-0.3
4,607,842	-		MIT1002_04104	0.66	-1.5
4,607,991	-		MIT1002_04104	0.79	-2.7
4,607,996	+		MIT1002_04104	0.79	+0.6
4,607,996	+		MIT1002_04104	0.79	+1.2
4,608,004	-		MIT1002_04104	0.80	+1.2
4,608,004	-		MIT1002_04104	0.80	+0.8
4,608,046	+		MIT1002_04104	0.84	+0.4
4,608,169	+				-0.7
4,608,294	+				-3.0
4,608,357	-				-1.4
4,608,457	+				+1.5
4,608,543	-		MIT1002_04105	0.22	-1.3
4,608,572	+		MIT1002_04105	0.28	-2.9
4,608,578	-		MIT1002_04105	0.30	-0.6
4,608,580	-		MIT1002_04105	0.30	+0.0
4,608,591	-		MIT1002_04105	0.32	-2.3
4,608,617	+		MIT1002_04105	0.38	+0.3
4,608,624	+		MIT1002_04105	0.40	+0.1
4,608,625	-		MIT1002_04105	0.40	-1.6
4,608,625	-		MIT1002_04105	0.40	+0.9
4,608,625	-		MIT1002_04105	0.40	-0.7
4,608,683	-		MIT1002_04105	0.52	+0.8
4,608,683	-		MIT1002_04105	0.52	-0.7
4,608,683	-		MIT1002_04105	0.52	+0.4
4,608,690	-		MIT1002_04105	0.54	-0.4
4,608,738	+		MIT1002_04105	0.64	-0.6
4,608,764	+		MIT1002_04105	0.69	-0.4
4,608,786	+		MIT1002_04105	0.74	+0.0
4,608,786	+		MIT1002_04105	0.74	-0.4
4,608,794	-		MIT1002_04105	0.76	+2.6
4,608,827	-		MIT1002_04105	0.83	+1.0
4,608,865	+				+1.4
4,608,896	-				-0.4
4,608,963	+				-1.2
4,608,963	+				-3.2
4,608,963	+				-0.1
4,608,963	+				+0.0
4,608,963	+				+1.2
4,608,963	+				-1.5
4,608,963	+				+1.8
4,608,963	+				+1.5
4,608,963	+				+0.6
4,608,963	+				+0.8
4,608,963	-				+0.3
4,608,971	-				-0.7
4,608,971	-				-1.3
4,608,971	-				-1.0
4,608,971	-				-0.3
4,608,971	-				-0.2
4,609,031	+		MIT1002_04106	0.11	+3.4
4,609,071	-		MIT1002_04106	0.17	+1.1
4,609,125	+		MIT1002_04106	0.26	-0.4
4,609,148	-		MIT1002_04106	0.29	-0.4
4,609,153	-		MIT1002_04106	0.30	+0.4
4,609,159	+		MIT1002_04106	0.31	+0.9
4,609,159	+		MIT1002_04106	0.31	-0.2
4,609,159	+		MIT1002_04106	0.31	-1.7
4,609,164	+		MIT1002_04106	0.32	+3.1
4,609,167	-		MIT1002_04106	0.32	-0.4
4,609,167	-		MIT1002_04106	0.32	+0.2
4,609,167	-		MIT1002_04106	0.32	+0.0
4,609,167	-		MIT1002_04106	0.32	-2.2
4,609,167	-		MIT1002_04106	0.32	+0.8
4,609,169	+		MIT1002_04106	0.33	-1.0
4,609,172	-		MIT1002_04106	0.33	-2.4
4,609,174	+		MIT1002_04106	0.33	-1.0
4,609,235	+		MIT1002_04106	0.43	-0.9