Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04065

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 4
4,564,855	+		MIT1002_04063	0.72	+1.3
4,564,866	+		MIT1002_04063	0.73	-0.7
4,564,866	+		MIT1002_04063	0.73	+0.7
4,564,874	-		MIT1002_04063	0.74	-0.1
4,564,874	-		MIT1002_04063	0.74	-0.0
4,564,874	-		MIT1002_04063	0.74	+0.4
4,564,937	+		MIT1002_04063	0.81	+1.8
4,564,937	+		MIT1002_04063	0.81	-0.6
4,564,937	+		MIT1002_04063	0.81	-0.3
4,564,937	+		MIT1002_04063	0.81	-1.4
4,564,937	+		MIT1002_04063	0.81	-0.2
4,564,945	-		MIT1002_04063	0.82	-0.2
4,564,945	-		MIT1002_04063	0.82	+0.8
4,564,945	-		MIT1002_04063	0.82	+1.8
4,564,945	-		MIT1002_04063	0.82	-1.7
4,564,945	-		MIT1002_04063	0.82	+0.0
4,564,965	-		MIT1002_04063	0.84	+0.2
4,564,987	+		MIT1002_04063	0.87	-1.5
4,565,022	+				-2.3
4,565,028	+				+0.3
4,565,047	+				+1.6
4,565,084	+				-0.6
4,565,084	-				+0.7
4,565,112	+				-0.8
4,565,112	+				-1.2
4,565,112	+				-1.4
4,565,120	-				+0.4
4,565,120	-				-0.0
4,565,120	-				-3.6
4,565,120	-				-0.8
4,565,120	-				-3.6
4,565,120	-				-0.4
4,565,141	+				-0.7
4,565,155	+		MIT1002_04064	0.12	+0.1
4,565,196	-		MIT1002_04064	0.19	-0.1
4,565,203	-		MIT1002_04064	0.20	-0.0
4,565,227	+		MIT1002_04064	0.24	-0.4
4,565,239	-		MIT1002_04064	0.26	-0.1
4,565,241	-		MIT1002_04064	0.26	+0.4
4,565,287	+		MIT1002_04064	0.34	+1.1
4,565,295	-		MIT1002_04064	0.36	+0.8
4,565,333	+		MIT1002_04064	0.42	+0.6
4,565,399	+		MIT1002_04064	0.54	-0.8
4,565,407	+		MIT1002_04064	0.55	+0.9
4,565,438	+		MIT1002_04064	0.60	-1.8
4,565,439	+		MIT1002_04064	0.60	-0.9
4,565,446	-		MIT1002_04064	0.62	-0.3
4,565,572	-		MIT1002_04064	0.83	+1.4
4,565,574	+		MIT1002_04064	0.83	+8.7
4,565,596	-		MIT1002_04064	0.87	+1.2
4,565,743	+				+0.2
4,565,797	-				-0.8
4,565,856	+				+1.2
4,565,856	+				-0.7
4,565,856	+				-1.6
4,565,864	-				-0.1
4,565,915	-				-0.6
4,565,927	+				-0.5
4,565,975	+		MIT1002_04065	0.12	+0.4
4,565,993	-		MIT1002_04065	0.13	-0.2
4,566,048	-		MIT1002_04065	0.18	+0.6
4,566,109	+		MIT1002_04065	0.22	-1.4
4,566,163	+		MIT1002_04065	0.27	-0.4
4,566,181	-		MIT1002_04065	0.28	+0.2
4,566,186	-		MIT1002_04065	0.28	+0.2
4,566,227	-		MIT1002_04065	0.31	+0.1
4,566,258	-		MIT1002_04065	0.34	-0.7
4,566,268	-		MIT1002_04065	0.35	-1.9
4,566,289	-		MIT1002_04065	0.36	-0.2
4,566,335	-		MIT1002_04065	0.40	-0.5
4,566,383	-		MIT1002_04065	0.44	-0.3
4,566,482	-		MIT1002_04065	0.51	-0.3
4,566,565	-		MIT1002_04065	0.58	-0.0
4,566,609	+		MIT1002_04065	0.61	-0.9
4,566,617	-		MIT1002_04065	0.62	-2.4
4,566,626	-		MIT1002_04065	0.62	+0.4
4,566,627	-		MIT1002_04065	0.62	-2.5
4,566,631	-		MIT1002_04065	0.63	-1.4
4,566,636	+		MIT1002_04065	0.63	+0.1
4,566,680	+		MIT1002_04065	0.67	+1.1
4,566,778	-		MIT1002_04065	0.74	-0.9
4,566,806	-		MIT1002_04065	0.76	-2.2
4,566,872	-		MIT1002_04065	0.81	-0.5
4,566,899	-		MIT1002_04065	0.83	+0.9
4,566,915	+		MIT1002_04065	0.85	-1.7
4,566,915	+		MIT1002_04065	0.85	+0.2
4,566,915	+		MIT1002_04065	0.85	-0.3
4,566,915	+		MIT1002_04065	0.85	+0.8
4,566,916	+		MIT1002_04065	0.85	+0.4
4,566,923	-		MIT1002_04065	0.85	+0.6
4,566,946	-		MIT1002_04065	0.87	-0.0
4,566,994	+				+0.0
4,566,994	+				-0.1
4,567,004	+				-1.9
4,567,029	+				-0.1
4,567,037	-				+0.4
4,567,037	-				-0.3
4,567,185	+				-1.6
4,567,195	+				+1.0
4,567,202	+		MIT1002_04066	0.11	+3.3
4,567,231	+		MIT1002_04066	0.16	+0.2
4,567,328	-		MIT1002_04066	0.32	-3.0
4,567,328	-		MIT1002_04066	0.32	-1.1
4,567,344	+		MIT1002_04066	0.35	+0.7
4,567,344	+		MIT1002_04066	0.35	+0.6
4,567,344	+		MIT1002_04066	0.35	-2.9
4,567,344	+		MIT1002_04066	0.35	+1.2
4,567,344	+		MIT1002_04066	0.35	-0.2
4,567,344	+		MIT1002_04066	0.35	-0.4
4,567,344	+		MIT1002_04066	0.35	+0.6
4,567,344	+		MIT1002_04066	0.35	+0.9
4,567,344	+		MIT1002_04066	0.35	+0.8
4,567,347	-		MIT1002_04066	0.36	-0.9
4,567,351	+		MIT1002_04066	0.36	+0.3
4,567,352	-		MIT1002_04066	0.36	-0.7
4,567,352	-		MIT1002_04066	0.36	+1.2
4,567,352	-		MIT1002_04066	0.36	+0.3
4,567,352	-		MIT1002_04066	0.36	-1.0
4,567,352	-		MIT1002_04066	0.36	-0.4
4,567,352	-		MIT1002_04066	0.36	+1.2
4,567,352	-		MIT1002_04066	0.36	-0.1
4,567,393	+		MIT1002_04066	0.43	+1.0
4,567,427	-		MIT1002_04066	0.49	-0.4
4,567,484	-		MIT1002_04066	0.59	-0.5
4,567,522	-		MIT1002_04066	0.65	+0.0
4,567,589	+		MIT1002_04066	0.76	+2.5
4,567,622	+		MIT1002_04066	0.82	+0.8
4,567,622	+		MIT1002_04066	0.82	+0.5
4,567,622	+		MIT1002_04066	0.82	-0.1
4,567,627	+		MIT1002_04066	0.83	+0.3
4,567,630	-		MIT1002_04066	0.83	+0.4
4,567,630	-		MIT1002_04066	0.83	+0.2
4,567,630	-		MIT1002_04066	0.83	-0.8
4,567,630	-		MIT1002_04066	0.83	+0.2
4,567,630	-		MIT1002_04066	0.83	+0.1
4,567,630	-		MIT1002_04066	0.83	+0.8
4,567,630	-		MIT1002_04066	0.83	-0.9
4,567,678	+				-0.2
4,567,686	-				-0.0
4,567,736	+				+1.1
4,567,739	-				+0.0
4,567,745	+				-1.0
4,567,767	+				+1.2
4,567,784	+				-0.6
4,567,814	-				+1.7
4,567,912	-				+0.5
4,567,912	-				-0.4
4,567,940	-		MIT1002_04067	0.11	+0.1
4,567,942	-		MIT1002_04067	0.11	+0.3
4,567,961	+		MIT1002_04067	0.15	-0.4
4,567,961	+		MIT1002_04067	0.15	+0.4
4,567,964	-		MIT1002_04067	0.16	+0.5
4,567,969	-		MIT1002_04067	0.17	+0.5
4,568,001	-		MIT1002_04067	0.24	-2.9
4,568,025	+		MIT1002_04067	0.29	+0.1
4,568,033	-		MIT1002_04067	0.31	-1.1
4,568,056	+		MIT1002_04067	0.36	+1.7
4,568,057	+		MIT1002_04067	0.36	+1.0
4,568,071	-		MIT1002_04067	0.39	+0.7
4,568,078	+		MIT1002_04067	0.41	+1.0
4,568,086	-		MIT1002_04067	0.42	+2.3
4,568,086	-		MIT1002_04067	0.42	+2.4
4,568,086	-		MIT1002_04067	0.42	+0.3