Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04035

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 4
4,520,967	-		MIT1002_04034	0.42	-1.4
4,520,969	+		MIT1002_04034	0.42	+0.2
4,520,976	+		MIT1002_04034	0.42	-3.8
4,520,976	+		MIT1002_04034	0.42	-2.1
4,520,984	-		MIT1002_04034	0.43	-1.2
4,520,984	-		MIT1002_04034	0.43	-1.1
4,520,984	-		MIT1002_04034	0.43	-1.8
4,520,984	-		MIT1002_04034	0.43	-4.4
4,520,984	-		MIT1002_04034	0.43	-0.6
4,520,989	-		MIT1002_04034	0.43	+0.4
4,520,989	-		MIT1002_04034	0.43	-1.7
4,520,989	-		MIT1002_04034	0.43	-1.0
4,520,994	-		MIT1002_04034	0.43	+0.0
4,521,007	+		MIT1002_04034	0.44	-3.3
4,521,023	-		MIT1002_04034	0.45	-5.0
4,521,113	-		MIT1002_04034	0.51	-2.7
4,521,154	+		MIT1002_04034	0.53	-1.3
4,521,275	+		MIT1002_04034	0.60	-2.3
4,521,301	+		MIT1002_04034	0.62	-2.0
4,521,309	-		MIT1002_04034	0.63	-2.2
4,521,309	-		MIT1002_04034	0.63	-0.6
4,521,321	+		MIT1002_04034	0.63	-0.4
4,521,321	+		MIT1002_04034	0.63	-2.7
4,521,371	+		MIT1002_04034	0.66	-0.4
4,521,384	-		MIT1002_04034	0.67	-3.9
4,521,544	+		MIT1002_04034	0.77	-0.5
4,521,544	+		MIT1002_04034	0.77	-4.8
4,521,645	+		MIT1002_04034	0.83	-0.8
4,521,650	-		MIT1002_04034	0.83	-2.0
4,521,695	+		MIT1002_04034	0.86	+0.8
4,521,698	-		MIT1002_04034	0.86	-2.0
4,521,703	-		MIT1002_04034	0.87	-1.8
4,521,703	-		MIT1002_04034	0.87	-2.4
4,521,703	-		MIT1002_04034	0.87	-1.8
4,521,708	-		MIT1002_04034	0.87	-0.7
4,521,713	-		MIT1002_04034	0.87	-1.0
4,521,761	+				-1.1
4,521,778	+				-1.3
4,521,778	+				-1.3
4,521,784	-				-1.5
4,521,793	-				-1.1
4,521,813	+				-0.4
4,521,876	+				-1.4
4,521,878	+				-1.5
4,521,884	-				-2.9
4,521,884	-				-1.3
4,521,955	-				-2.5
4,521,957	-				+0.4
4,522,156	+		MIT1002_04035	0.20	-2.9
4,522,164	-		MIT1002_04035	0.20	-2.8
4,522,190	+		MIT1002_04035	0.23	-1.6
4,522,358	+		MIT1002_04035	0.37	-2.0
4,522,371	-		MIT1002_04035	0.38	-1.3
4,522,391	-		MIT1002_04035	0.40	-0.6
4,522,400	+		MIT1002_04035	0.41	-2.3
4,522,402	+		MIT1002_04035	0.41	-0.9
4,522,416	+		MIT1002_04035	0.42	-2.1
4,522,416	+		MIT1002_04035	0.42	-3.1
4,522,424	-		MIT1002_04035	0.43	-1.7
4,522,424	-		MIT1002_04035	0.43	-2.9
4,522,477	+		MIT1002_04035	0.47	-1.9
4,522,477	+		MIT1002_04035	0.47	-0.4
4,522,487	+		MIT1002_04035	0.48	-3.7
4,522,497	+		MIT1002_04035	0.49	-1.7
4,522,514	-		MIT1002_04035	0.50	-2.7
4,522,573	-		MIT1002_04035	0.55	-2.8
4,522,642	-		MIT1002_04035	0.61	+0.1
4,522,699	-		MIT1002_04035	0.66	-1.9
4,522,699	-		MIT1002_04035	0.66	-0.7
4,522,899	-		MIT1002_04035	0.83	+0.0
4,522,941	+		MIT1002_04035	0.87	-4.2
4,522,962	+		MIT1002_04035	0.89	-2.6
4,522,970	-		MIT1002_04035	0.90	-1.8
4,522,970	-		MIT1002_04035	0.90	-1.5
4,523,090	+				-0.7
4,523,101	+				-0.1
4,523,109	-				-1.7
4,523,148	-				+0.2
4,523,155	-				+0.3
4,523,155	-				-1.4
4,523,178	-				-0.1
4,523,252	-				-0.0
4,523,366	-				+0.2
4,523,572	+				+0.4
4,523,695	-				+0.1
4,523,782	+		MIT1002_04036	0.17	-0.1
4,523,859	-		MIT1002_04036	0.30	-1.7
4,523,886	-		MIT1002_04036	0.34	-1.6
4,524,015	-		MIT1002_04036	0.54	-3.9
4,524,054	-		MIT1002_04036	0.61	-1.6