Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_03853 and MIT1002_03854 are separated by 155 nucleotides MIT1002_03854 and MIT1002_03855 are separated by 117 nucleotides MIT1002_03855 and MIT1002_03856 are separated by 328 nucleotides
MIT1002_03853: MIT1002_03853 - TonB-dependent copper receptor, at 4,316,294 to 4,318,411
_03853
MIT1002_03854: MIT1002_03854 - Sulfite exporter TauE/SafE, at 4,318,567 to 4,319,349
_03854
MIT1002_03855: MIT1002_03855 - hypothetical protein, at 4,319,467 to 4,319,643
_03855
MIT1002_03856: MIT1002_03856 - hypothetical protein, at 4,319,972 to 4,320,394
_03856
Position (kb) 4318
4319
4320 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4317.631 kb on + strand, within MIT1002_03853 at 4317.632 kb on - strand, within MIT1002_03853 at 4317.652 kb on - strand, within MIT1002_03853 at 4317.665 kb on + strand, within MIT1002_03853 at 4317.751 kb on - strand, within MIT1002_03853 at 4317.768 kb on + strand, within MIT1002_03853 at 4317.776 kb on - strand, within MIT1002_03853 at 4317.778 kb on + strand, within MIT1002_03853 at 4317.925 kb on + strand, within MIT1002_03853 at 4317.943 kb on + strand, within MIT1002_03853 at 4317.977 kb on + strand, within MIT1002_03853 at 4317.987 kb on + strand, within MIT1002_03853 at 4318.013 kb on + strand, within MIT1002_03853 at 4318.013 kb on + strand, within MIT1002_03853 at 4318.021 kb on - strand, within MIT1002_03853 at 4318.021 kb on - strand, within MIT1002_03853 at 4318.062 kb on + strand, within MIT1002_03853 at 4318.070 kb on + strand, within MIT1002_03853 at 4318.092 kb on + strand, within MIT1002_03853 at 4318.103 kb on - strand, within MIT1002_03853 at 4318.223 kb on - strand at 4318.230 kb on + strand at 4318.249 kb on + strand at 4318.249 kb on + strand at 4318.257 kb on - strand at 4318.294 kb on + strand at 4318.302 kb on - strand at 4318.309 kb on - strand at 4318.309 kb on - strand at 4318.309 kb on - strand at 4318.313 kb on + strand at 4318.316 kb on + strand at 4318.404 kb on + strand at 4318.446 kb on - strand at 4318.477 kb on - strand at 4318.487 kb on + strand at 4318.487 kb on + strand at 4318.529 kb on + strand at 4318.531 kb on + strand at 4318.562 kb on - strand at 4318.645 kb on - strand at 4318.675 kb on + strand, within MIT1002_03854 at 4318.683 kb on - strand, within MIT1002_03854 at 4318.785 kb on + strand, within MIT1002_03854 at 4318.793 kb on - strand, within MIT1002_03854 at 4318.803 kb on + strand, within MIT1002_03854 at 4318.803 kb on - strand, within MIT1002_03854 at 4318.805 kb on + strand, within MIT1002_03854 at 4318.811 kb on - strand, within MIT1002_03854 at 4318.813 kb on - strand, within MIT1002_03854 at 4318.882 kb on - strand, within MIT1002_03854 at 4318.926 kb on - strand, within MIT1002_03854 at 4318.961 kb on + strand, within MIT1002_03854 at 4318.969 kb on - strand, within MIT1002_03854 at 4318.975 kb on + strand, within MIT1002_03854 at 4319.043 kb on + strand, within MIT1002_03854 at 4319.051 kb on - strand, within MIT1002_03854 at 4319.097 kb on + strand, within MIT1002_03854 at 4319.157 kb on + strand, within MIT1002_03854 at 4319.157 kb on + strand, within MIT1002_03854 at 4319.157 kb on + strand, within MIT1002_03854 at 4319.157 kb on + strand, within MIT1002_03854 at 4319.157 kb on + strand, within MIT1002_03854 at 4319.157 kb on + strand, within MIT1002_03854 at 4319.157 kb on + strand, within MIT1002_03854 at 4319.157 kb on + strand, within MIT1002_03854 at 4319.165 kb on - strand, within MIT1002_03854 at 4319.165 kb on - strand, within MIT1002_03854 at 4319.165 kb on - strand, within MIT1002_03854 at 4319.165 kb on - strand, within MIT1002_03854 at 4319.165 kb on - strand, within MIT1002_03854 at 4319.165 kb on - strand, within MIT1002_03854 at 4319.188 kb on + strand, within MIT1002_03854 at 4319.193 kb on + strand, within MIT1002_03854 at 4319.193 kb on + strand, within MIT1002_03854 at 4319.234 kb on + strand, within MIT1002_03854 at 4319.252 kb on + strand, within MIT1002_03854 at 4319.294 kb on - strand at 4319.330 kb on - strand at 4319.350 kb on + strand at 4319.501 kb on + strand, within MIT1002_03855 at 4319.605 kb on - strand, within MIT1002_03855 at 4319.638 kb on + strand at 4319.638 kb on + strand at 4319.638 kb on + strand at 4319.643 kb on + strand at 4319.646 kb on - strand at 4319.648 kb on + strand at 4319.651 kb on - strand at 4319.656 kb on - strand at 4319.657 kb on - strand at 4319.657 kb on - strand at 4319.662 kb on + strand at 4319.679 kb on + strand at 4319.747 kb on + strand at 4319.747 kb on + strand at 4319.755 kb on - strand at 4319.767 kb on + strand at 4319.869 kb on - strand at 4319.869 kb on - strand at 4319.969 kb on + strand at 4319.969 kb on + strand at 4319.969 kb on + strand at 4319.977 kb on - strand at 4320.023 kb on - strand, within MIT1002_03856 at 4320.063 kb on + strand, within MIT1002_03856 at 4320.063 kb on + strand, within MIT1002_03856 at 4320.082 kb on + strand, within MIT1002_03856 at 4320.096 kb on - strand, within MIT1002_03856 at 4320.106 kb on - strand, within MIT1002_03856 at 4320.133 kb on + strand, within MIT1002_03856 at 4320.143 kb on + strand, within MIT1002_03856 at 4320.144 kb on + strand, within MIT1002_03856 at 4320.149 kb on - strand, within MIT1002_03856 at 4320.250 kb on + strand, within MIT1002_03856 at 4320.250 kb on + strand, within MIT1002_03856 at 4320.250 kb on + strand, within MIT1002_03856 at 4320.255 kb on + strand, within MIT1002_03856 at 4320.258 kb on - strand, within MIT1002_03856 at 4320.258 kb on - strand, within MIT1002_03856 at 4320.258 kb on - strand, within MIT1002_03856 at 4320.270 kb on - strand, within MIT1002_03856 at 4320.281 kb on + strand, within MIT1002_03856 at 4320.281 kb on + strand, within MIT1002_03856 at 4320.281 kb on + strand, within MIT1002_03856 at 4320.281 kb on + strand, within MIT1002_03856 at 4320.289 kb on - strand, within MIT1002_03856 at 4320.289 kb on - strand, within MIT1002_03856 at 4320.289 kb on - strand, within MIT1002_03856 at 4320.335 kb on + strand, within MIT1002_03856
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 4 remove 4,317,631 + MIT1002_03853 0.63 +0.9 4,317,632 - MIT1002_03853 0.63 -0.4 4,317,652 - MIT1002_03853 0.64 -1.4 4,317,665 + MIT1002_03853 0.65 -0.7 4,317,751 - MIT1002_03853 0.69 -0.4 4,317,768 + MIT1002_03853 0.70 +1.1 4,317,776 - MIT1002_03853 0.70 -0.8 4,317,778 + MIT1002_03853 0.70 +2.6 4,317,925 + MIT1002_03853 0.77 -1.4 4,317,943 + MIT1002_03853 0.78 -1.6 4,317,977 + MIT1002_03853 0.79 +0.4 4,317,987 + MIT1002_03853 0.80 -0.9 4,318,013 + MIT1002_03853 0.81 -1.8 4,318,013 + MIT1002_03853 0.81 +0.2 4,318,021 - MIT1002_03853 0.82 -3.7 4,318,021 - MIT1002_03853 0.82 +1.4 4,318,062 + MIT1002_03853 0.83 +1.5 4,318,070 + MIT1002_03853 0.84 -0.6 4,318,092 + MIT1002_03853 0.85 +2.1 4,318,103 - MIT1002_03853 0.85 +0.3 4,318,223 - +0.4 4,318,230 + +0.4 4,318,249 + -0.7 4,318,249 + -0.6 4,318,257 - +0.1 4,318,294 + +1.3 4,318,302 - -1.1 4,318,309 - -0.7 4,318,309 - +0.7 4,318,309 - -0.1 4,318,313 + -0.2 4,318,316 + +1.5 4,318,404 + -2.2 4,318,446 - -0.9 4,318,477 - +0.4 4,318,487 + +1.1 4,318,487 + +1.8 4,318,529 + +1.6 4,318,531 + -0.3 4,318,562 - -0.0 4,318,645 - -1.9 4,318,675 + MIT1002_03854 0.14 +0.7 4,318,683 - MIT1002_03854 0.15 +0.5 4,318,785 + MIT1002_03854 0.28 -0.5 4,318,793 - MIT1002_03854 0.29 -3.3 4,318,803 + MIT1002_03854 0.30 +0.0 4,318,803 - MIT1002_03854 0.30 -0.2 4,318,805 + MIT1002_03854 0.30 +0.6 4,318,811 - MIT1002_03854 0.31 -0.2 4,318,813 - MIT1002_03854 0.31 +0.9 4,318,882 - MIT1002_03854 0.40 -0.5 4,318,926 - MIT1002_03854 0.46 -0.3 4,318,961 + MIT1002_03854 0.50 -2.4 4,318,969 - MIT1002_03854 0.51 -2.4 4,318,975 + MIT1002_03854 0.52 -0.7 4,319,043 + MIT1002_03854 0.61 -0.7 4,319,051 - MIT1002_03854 0.62 -0.1 4,319,097 + MIT1002_03854 0.68 +0.1 4,319,157 + MIT1002_03854 0.75 +1.0 4,319,157 + MIT1002_03854 0.75 +1.7 4,319,157 + MIT1002_03854 0.75 +2.0 4,319,157 + MIT1002_03854 0.75 +1.1 4,319,157 + MIT1002_03854 0.75 +0.9 4,319,157 + MIT1002_03854 0.75 +0.7 4,319,157 + MIT1002_03854 0.75 -0.4 4,319,157 + MIT1002_03854 0.75 -0.1 4,319,165 - MIT1002_03854 0.76 -0.4 4,319,165 - MIT1002_03854 0.76 -0.8 4,319,165 - MIT1002_03854 0.76 +0.5 4,319,165 - MIT1002_03854 0.76 -0.8 4,319,165 - MIT1002_03854 0.76 -0.9 4,319,165 - MIT1002_03854 0.76 +1.1 4,319,188 + MIT1002_03854 0.79 -1.9 4,319,193 + MIT1002_03854 0.80 -0.6 4,319,193 + MIT1002_03854 0.80 +0.3 4,319,234 + MIT1002_03854 0.85 -1.4 4,319,252 + MIT1002_03854 0.87 -2.1 4,319,294 - +0.5 4,319,330 - -0.4 4,319,350 + +0.1 4,319,501 + MIT1002_03855 0.19 -2.1 4,319,605 - MIT1002_03855 0.78 -3.6 4,319,638 + +0.7 4,319,638 + -2.0 4,319,638 + -1.0 4,319,643 + -1.5 4,319,646 - +0.4 4,319,648 + -0.9 4,319,651 - -0.1 4,319,656 - -1.2 4,319,657 - +1.1 4,319,657 - -0.5 4,319,662 + +1.2 4,319,679 + -1.9 4,319,747 + +0.1 4,319,747 + +1.2 4,319,755 - +0.4 4,319,767 + +0.6 4,319,869 - -2.0 4,319,869 - +0.0 4,319,969 + +0.3 4,319,969 + -2.4 4,319,969 + +1.3 4,319,977 - +0.6 4,320,023 - MIT1002_03856 0.12 -0.0 4,320,063 + MIT1002_03856 0.22 -0.6 4,320,063 + MIT1002_03856 0.22 +1.1 4,320,082 + MIT1002_03856 0.26 -0.6 4,320,096 - MIT1002_03856 0.29 +0.6 4,320,106 - MIT1002_03856 0.32 -0.7 4,320,133 + MIT1002_03856 0.38 -1.9 4,320,143 + MIT1002_03856 0.40 -0.9 4,320,144 + MIT1002_03856 0.41 -0.8 4,320,149 - MIT1002_03856 0.42 -0.7 4,320,250 + MIT1002_03856 0.66 +1.1 4,320,250 + MIT1002_03856 0.66 +0.2 4,320,250 + MIT1002_03856 0.66 +0.6 4,320,255 + MIT1002_03856 0.67 -0.1 4,320,258 - MIT1002_03856 0.68 -0.1 4,320,258 - MIT1002_03856 0.68 +0.7 4,320,258 - MIT1002_03856 0.68 -0.6 4,320,270 - MIT1002_03856 0.70 -0.1 4,320,281 + MIT1002_03856 0.73 -1.4 4,320,281 + MIT1002_03856 0.73 -1.6 4,320,281 + MIT1002_03856 0.73 -2.4 4,320,281 + MIT1002_03856 0.73 +0.5 4,320,289 - MIT1002_03856 0.75 +0.2 4,320,289 - MIT1002_03856 0.75 -1.7 4,320,289 - MIT1002_03856 0.75 -0.0 4,320,335 + MIT1002_03856 0.86 +0.5
Or see this region's nucleotide sequence