Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03495

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 4
3,902,602	+				-1.7
3,902,607	+				-0.9
3,902,614	+				-0.8
3,902,744	+		MIT1002_03494	0.14	-0.1
3,902,744	+		MIT1002_03494	0.14	-0.4
3,902,744	+		MIT1002_03494	0.14	-1.3
3,902,744	+		MIT1002_03494	0.14	-0.5
3,902,744	+		MIT1002_03494	0.14	+0.4
3,902,752	-		MIT1002_03494	0.16	-0.6
3,902,754	+		MIT1002_03494	0.16	+0.3
3,902,754	+		MIT1002_03494	0.16	-2.9
3,902,762	-		MIT1002_03494	0.17	+1.0
3,902,764	-		MIT1002_03494	0.17	-0.6
3,902,764	-		MIT1002_03494	0.17	-0.2
3,902,808	+		MIT1002_03494	0.24	-2.3
3,902,810	-		MIT1002_03494	0.24	+0.6
3,902,816	-		MIT1002_03494	0.25	-0.5
3,902,849	+		MIT1002_03494	0.30	+0.4
3,902,939	-		MIT1002_03494	0.43	+0.7
3,902,971	+		MIT1002_03494	0.48	-1.4
3,902,979	-		MIT1002_03494	0.49	-0.8
3,902,979	-		MIT1002_03494	0.49	+0.6
3,902,979	-		MIT1002_03494	0.49	+0.5
3,903,002	+		MIT1002_03494	0.52	+0.1
3,903,010	+		MIT1002_03494	0.53	+0.6
3,903,010	-		MIT1002_03494	0.53	+2.2
3,903,034	-		MIT1002_03494	0.57	+2.1
3,903,059	-		MIT1002_03494	0.61	-0.2
3,903,082	+		MIT1002_03494	0.64	+0.9
3,903,082	+		MIT1002_03494	0.64	+0.2
3,903,090	-		MIT1002_03494	0.65	+3.3
3,903,090	-		MIT1002_03494	0.65	+0.4
3,903,090	-		MIT1002_03494	0.65	+0.4
3,903,090	-		MIT1002_03494	0.65	+0.4
3,903,135	-		MIT1002_03494	0.72	-0.1
3,903,187	-		MIT1002_03494	0.79	-2.9
3,903,209	+		MIT1002_03494	0.82	+0.0
3,903,225	+		MIT1002_03494	0.85	+0.4
3,903,233	-		MIT1002_03494	0.86	-0.8
3,903,233	-		MIT1002_03494	0.86	+0.5
3,903,235	+		MIT1002_03494	0.86	+1.9
3,903,238	-		MIT1002_03494	0.87	-1.7
3,903,255	-		MIT1002_03494	0.89	-1.4
3,903,394	-				+0.0
3,903,477	+				+0.9
3,903,482	+				-0.3
3,903,484	+				-0.7
3,903,519	-				-3.1
3,903,521	+				-0.4
3,903,527	+				+4.5
3,903,613	+				-0.3
3,903,646	-				-2.3
3,903,778	-				-0.3
3,903,823	+				-1.0
3,903,831	-		MIT1002_03495	0.10	+0.7
3,903,831	-		MIT1002_03495	0.10	+1.5
3,903,845	+		MIT1002_03495	0.11	+0.2
3,903,845	+		MIT1002_03495	0.11	+2.3
3,903,847	+		MIT1002_03495	0.11	-1.7
3,903,857	-		MIT1002_03495	0.11	-0.6
3,903,871	-		MIT1002_03495	0.11	-2.4
3,903,917	-		MIT1002_03495	0.13	+1.8
3,904,038	+		MIT1002_03495	0.17	+1.9
3,904,041	+		MIT1002_03495	0.17	+3.7
3,904,044	-		MIT1002_03495	0.17	+0.9
3,904,046	+		MIT1002_03495	0.17	+0.7
3,904,049	-		MIT1002_03495	0.17	-0.3
3,904,049	-		MIT1002_03495	0.17	-0.4
3,904,060	-		MIT1002_03495	0.18	+1.5
3,904,116	+		MIT1002_03495	0.20	-0.6
3,904,121	+		MIT1002_03495	0.20	-1.6
3,904,179	+		MIT1002_03495	0.22	-1.2
3,904,179	+		MIT1002_03495	0.22	-0.8
3,904,187	-		MIT1002_03495	0.22	+0.9
3,904,189	+		MIT1002_03495	0.22	-0.6
3,904,242	+		MIT1002_03495	0.24	-0.4
3,904,242	-		MIT1002_03495	0.24	+0.8
3,904,274	-		MIT1002_03495	0.25	-0.7
3,904,281	-		MIT1002_03495	0.25	+0.8
3,904,296	+		MIT1002_03495	0.26	+1.6
3,904,304	-		MIT1002_03495	0.26	-0.1
3,904,304	-		MIT1002_03495	0.26	+1.5
3,904,323	-		MIT1002_03495	0.26	+0.7
3,904,333	+		MIT1002_03495	0.27	+1.3
3,904,333	+		MIT1002_03495	0.27	+1.3
3,904,341	-		MIT1002_03495	0.27	-0.5
3,904,451	+		MIT1002_03495	0.31	+1.2
3,904,456	+		MIT1002_03495	0.31	-0.6
3,904,583	+		MIT1002_03495	0.35	+0.1
3,904,603	+		MIT1002_03495	0.36	+0.3
3,904,606	-		MIT1002_03495	0.36	+0.3
3,904,626	+		MIT1002_03495	0.36	+1.9
3,904,626	+		MIT1002_03495	0.36	+1.6
3,904,626	+		MIT1002_03495	0.36	-0.0
3,904,626	+		MIT1002_03495	0.36	+0.7
3,904,629	-		MIT1002_03495	0.37	-3.5
3,904,634	-		MIT1002_03495	0.37	+1.5
3,904,634	-		MIT1002_03495	0.37	+3.9
3,904,634	-		MIT1002_03495	0.37	-0.3
3,904,677	+		MIT1002_03495	0.38	+1.3
3,904,677	+		MIT1002_03495	0.38	+0.0
3,904,677	+		MIT1002_03495	0.38	-0.2
3,904,677	+		MIT1002_03495	0.38	+0.7
3,904,677	+		MIT1002_03495	0.38	-0.8
3,904,677	+		MIT1002_03495	0.38	+3.0
3,904,677	+		MIT1002_03495	0.38	-0.1
3,904,677	+		MIT1002_03495	0.38	-1.5
3,904,677	+		MIT1002_03495	0.38	+1.1
3,904,677	+		MIT1002_03495	0.38	-2.1
3,904,677	+		MIT1002_03495	0.38	-1.2
3,904,677	+		MIT1002_03495	0.38	+0.5
3,904,685	-		MIT1002_03495	0.38	-0.3
3,904,685	-		MIT1002_03495	0.38	+0.4
3,904,685	-		MIT1002_03495	0.38	+2.4
3,904,685	-		MIT1002_03495	0.38	+0.2
3,904,685	-		MIT1002_03495	0.38	+0.1
3,904,685	-		MIT1002_03495	0.38	-0.4
3,904,685	-		MIT1002_03495	0.38	+0.3
3,904,685	-		MIT1002_03495	0.38	-0.7
3,904,685	-		MIT1002_03495	0.38	+0.9
3,904,687	+		MIT1002_03495	0.38	-0.2
3,904,687	+		MIT1002_03495	0.38	+1.4
3,904,692	+		MIT1002_03495	0.39	+1.0
3,904,708	-		MIT1002_03495	0.39	+0.4
3,904,712	+		MIT1002_03495	0.39	+2.3
3,904,720	-		MIT1002_03495	0.40	-1.3
3,904,720	-		MIT1002_03495	0.40	+0.4
3,904,720	-		MIT1002_03495	0.40	+0.6
3,904,720	-		MIT1002_03495	0.40	+0.6
3,904,736	-		MIT1002_03495	0.40	-0.3
3,904,844	+		MIT1002_03495	0.44	+1.4
3,904,844	+		MIT1002_03495	0.44	+1.8
3,904,857	+		MIT1002_03495	0.44	+1.5
3,904,867	+		MIT1002_03495	0.44	+0.8
3,904,870	-		MIT1002_03495	0.44	-1.2
3,904,875	-		MIT1002_03495	0.45	+0.5
3,904,883	-		MIT1002_03495	0.45	+0.1
3,904,911	+		MIT1002_03495	0.46	+0.7
3,904,919	-		MIT1002_03495	0.46	+1.8
3,904,919	-		MIT1002_03495	0.46	-0.1
3,904,919	-		MIT1002_03495	0.46	-1.8
3,904,987	-		MIT1002_03495	0.48	-0.6
3,905,087	-		MIT1002_03495	0.52	-0.9
3,905,100	-		MIT1002_03495	0.52	-2.1
3,905,143	+		MIT1002_03495	0.54	-0.5
3,905,146	-		MIT1002_03495	0.54	-0.8
3,905,222	+		MIT1002_03495	0.56	-0.4
3,905,238	+		MIT1002_03495	0.57	+1.6
3,905,247	+		MIT1002_03495	0.57	+1.0
3,905,247	+		MIT1002_03495	0.57	+0.4
3,905,274	+		MIT1002_03495	0.58	+0.3
3,905,277	-		MIT1002_03495	0.58	-0.4
3,905,288	+		MIT1002_03495	0.58	+0.3
3,905,296	-		MIT1002_03495	0.59	+1.0
3,905,296	-		MIT1002_03495	0.59	-1.6
3,905,317	-		MIT1002_03495	0.59	-1.0
3,905,338	-		MIT1002_03495	0.60	+1.1
3,905,369	+		MIT1002_03495	0.61	+0.8
3,905,377	-		MIT1002_03495	0.61	+1.9
3,905,377	-		MIT1002_03495	0.61	-4.6
3,905,377	-		MIT1002_03495	0.61	+0.1
3,905,377	-		MIT1002_03495	0.61	+0.0
3,905,387	-		MIT1002_03495	0.62	-4.3
3,905,484	+		MIT1002_03495	0.65	-1.3
3,905,501	-		MIT1002_03495	0.65	+2.9
3,905,501	-		MIT1002_03495	0.65	+0.4
3,905,501	-		MIT1002_03495	0.65	+0.7
3,905,682	+		MIT1002_03495	0.71	+0.1
3,905,690	-		MIT1002_03495	0.72	+1.9
3,905,690	-		MIT1002_03495	0.72	-0.9
3,905,697	+		MIT1002_03495	0.72	+1.0
3,905,718	+		MIT1002_03495	0.73	-0.3
3,905,718	+		MIT1002_03495	0.73	+0.2
3,905,718	+		MIT1002_03495	0.73	-2.1
3,905,726	-		MIT1002_03495	0.73	+1.1
3,905,733	-		MIT1002_03495	0.73	-3.3
3,905,741	-		MIT1002_03495	0.73	-1.0
3,905,786	-		MIT1002_03495	0.75	-0.3
3,905,786	-		MIT1002_03495	0.75	+0.2
3,905,833	-		MIT1002_03495	0.76	+0.8
3,905,835	-		MIT1002_03495	0.76	-0.6
3,905,924	+		MIT1002_03495	0.79	+0.2
3,905,984	-		MIT1002_03495	0.81	+2.1
3,905,986	+		MIT1002_03495	0.81	+0.5
3,905,986	+		MIT1002_03495	0.81	+0.9
3,906,084	+		MIT1002_03495	0.85	-1.2
3,906,117	+		MIT1002_03495	0.86	+0.6
3,906,157	-		MIT1002_03495	0.87	-2.6
3,906,243	+		MIT1002_03495	0.90	-1.8
3,906,251	-				+0.6
3,906,312	-				-0.4
3,906,318	+				+0.6
3,906,318	+				+1.5
3,906,342	+				+0.2
3,906,397	+				-2.3
3,906,421	+				+1.4
3,906,425	+				+0.0
3,906,429	-				+0.9
3,906,469	-				-3.1
3,906,469	-				-0.8
3,906,494	+				+0.2
3,906,524	+				-0.5
3,906,532	-				-0.7
3,906,550	-				-1.0
3,906,550	-				+0.4
3,906,550	-				+2.0
3,906,560	-				-0.2
3,906,595	+				-0.0
3,906,699	+				-0.6
3,906,699	+				-0.5
3,906,705	+				+0.1
3,906,707	-				-0.9
3,906,713	-				+0.6
3,906,780	+				-2.0
3,906,792	+				+0.0
3,906,816	+				-0.8
3,906,818	+				+0.5
3,906,993	+				+0.4
3,907,263	+		MIT1002_03496	0.38	+1.8
3,907,271	-		MIT1002_03496	0.38	+1.5
3,907,292	+		MIT1002_03496	0.41	+0.4
3,907,379	-		MIT1002_03496	0.51	-1.1
3,907,425	+		MIT1002_03496	0.56	-0.0
3,907,446	+		MIT1002_03496	0.58	+0.4
3,907,492	+		MIT1002_03496	0.63	-0.9
3,907,512	+		MIT1002_03496	0.65	-0.2
3,907,512	+		MIT1002_03496	0.65	-1.9
3,907,520	-		MIT1002_03496	0.66	+0.4