Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03422

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 4
3,824,056	-				+0.6
3,824,074	+				-0.7
3,824,082	-				-2.7
3,824,138	-				+2.8
3,824,138	-				-1.0
3,824,205	+		MIT1002_03421	0.16	+0.6
3,824,220	-		MIT1002_03421	0.18	-1.4
3,824,222	+		MIT1002_03421	0.18	-0.3
3,824,222	+		MIT1002_03421	0.18	-0.6
3,824,222	+		MIT1002_03421	0.18	-0.8
3,824,222	+		MIT1002_03421	0.18	-1.0
3,824,244	+		MIT1002_03421	0.20	+0.5
3,824,244	+		MIT1002_03421	0.20	-0.9
3,824,252	-		MIT1002_03421	0.21	-1.7
3,824,252	-		MIT1002_03421	0.21	-0.8
3,824,257	-		MIT1002_03421	0.22	-0.4
3,824,257	-		MIT1002_03421	0.22	+1.1
3,824,262	-		MIT1002_03421	0.22	-1.0
3,824,291	+		MIT1002_03421	0.26	-0.2
3,824,299	-		MIT1002_03421	0.27	+0.2
3,824,360	+		MIT1002_03421	0.33	-0.4
3,824,460	-		MIT1002_03421	0.45	-0.5
3,824,460	-		MIT1002_03421	0.45	-1.3
3,824,487	+		MIT1002_03421	0.48	+0.9
3,824,568	+		MIT1002_03421	0.57	+0.1
3,824,568	+		MIT1002_03421	0.57	-2.9
3,824,568	+		MIT1002_03421	0.57	+1.3
3,824,568	+		MIT1002_03421	0.57	-0.9
3,824,575	+		MIT1002_03421	0.57	+0.1
3,824,598	-		MIT1002_03421	0.60	-0.4
3,824,678	-		MIT1002_03421	0.69	-1.1
3,824,860	-		MIT1002_03421	0.89	-1.2
3,824,906	+				-0.4
3,824,906	+				+0.0
3,824,969	+				-1.3
3,825,029	+				-1.0
3,825,042	+				-0.5
3,825,042	+				-1.3
3,825,042	+				-0.2
3,825,050	-				-0.2
3,825,050	-				-0.1
3,825,087	+				+1.8
3,825,146	-		MIT1002_03422	0.14	+0.3
3,825,167	+		MIT1002_03422	0.16	-1.9
3,825,175	-		MIT1002_03422	0.16	-0.2
3,825,217	-		MIT1002_03422	0.19	-1.1
3,825,277	+		MIT1002_03422	0.24	+0.3
3,825,277	+		MIT1002_03422	0.24	-0.5
3,825,285	-		MIT1002_03422	0.24	-0.1
3,825,292	+		MIT1002_03422	0.25	-1.2
3,825,297	+		MIT1002_03422	0.25	-0.4
3,825,300	-		MIT1002_03422	0.25	+0.7
3,825,302	-		MIT1002_03422	0.26	-2.2
3,825,344	-		MIT1002_03422	0.29	-1.4
3,825,365	+		MIT1002_03422	0.30	+1.6
3,825,450	-		MIT1002_03422	0.37	+0.2
3,825,458	-		MIT1002_03422	0.37	-0.4
3,825,493	+		MIT1002_03422	0.40	-0.2
3,825,549	-		MIT1002_03422	0.44	-3.1
3,825,644	+		MIT1002_03422	0.51	+0.4
3,825,649	+		MIT1002_03422	0.52	+0.3
3,825,652	-		MIT1002_03422	0.52	-0.2
3,825,668	-		MIT1002_03422	0.53	+1.4
3,825,712	-		MIT1002_03422	0.56	+1.0
3,825,719	-		MIT1002_03422	0.57	-1.4
3,825,743	+		MIT1002_03422	0.59	-0.6
3,825,751	-		MIT1002_03422	0.59	-1.5
3,825,753	-		MIT1002_03422	0.59	+0.1
3,825,753	-		MIT1002_03422	0.59	-0.4
3,825,753	-		MIT1002_03422	0.59	-1.5
3,825,775	-		MIT1002_03422	0.61	-0.8
3,825,790	+		MIT1002_03422	0.62	+1.2
3,825,800	+		MIT1002_03422	0.63	+1.4
3,825,800	+		MIT1002_03422	0.63	-3.0
3,825,800	+		MIT1002_03422	0.63	-1.9
3,825,800	+		MIT1002_03422	0.63	-0.7
3,825,800	+		MIT1002_03422	0.63	+0.5
3,825,808	-		MIT1002_03422	0.63	-0.1
3,825,808	-		MIT1002_03422	0.63	-2.5
3,825,808	-		MIT1002_03422	0.63	+1.5
3,825,808	-		MIT1002_03422	0.63	-0.5
3,825,808	-		MIT1002_03422	0.63	+0.7
3,825,808	-		MIT1002_03422	0.63	-2.3
3,825,808	-		MIT1002_03422	0.63	+0.7
3,825,808	-		MIT1002_03422	0.63	-0.5
3,825,808	-		MIT1002_03422	0.63	-0.3
3,825,919	-		MIT1002_03422	0.72	+1.0
3,825,928	+		MIT1002_03422	0.72	-0.1
3,825,946	-		MIT1002_03422	0.74	-0.6
3,825,946	-		MIT1002_03422	0.74	-0.4
3,826,043	+		MIT1002_03422	0.81	-0.6
3,826,140	+		MIT1002_03422	0.88	-1.0
3,826,148	-		MIT1002_03422	0.89	-1.8
3,826,264	-				-0.4
3,826,378	-				-0.0
3,826,395	-		MIT1002_03423	0.12	-2.5
3,826,517	-		MIT1002_03423	0.76	-1.4
3,826,545	+				-3.2
3,826,632	+				+0.2
3,826,708	+				+1.1
3,826,802	-				-0.3
3,826,849	+				+0.3
3,826,857	-				-0.2
3,826,949	+				+0.1
3,826,968	+				+3.3
3,827,034	-		MIT1002_03424	0.15	+0.7
3,827,149	-		MIT1002_03424	0.29	+0.3
3,827,159	-		MIT1002_03424	0.30	+1.8
3,827,196	-		MIT1002_03424	0.34	+1.1
3,827,196	-		MIT1002_03424	0.34	+0.8
3,827,251	-		MIT1002_03424	0.41	-0.2