Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03126

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 4
3,477,266	-		MIT1002_03123	0.80	-2.1
3,477,349	+				+1.3
3,477,437	+		MIT1002_03124	0.11	+1.0
3,477,471	+		MIT1002_03124	0.21	+1.7
3,477,488	+		MIT1002_03124	0.26	-0.5
3,477,517	+		MIT1002_03124	0.35	+0.8
3,477,517	+		MIT1002_03124	0.35	+0.8
3,477,525	-		MIT1002_03124	0.38	+0.3
3,477,533	+		MIT1002_03124	0.40	-3.5
3,477,533	+		MIT1002_03124	0.40	-0.1
3,477,560	-		MIT1002_03124	0.48	-1.7
3,477,734	-				-0.5
3,477,736	-				-1.3
3,477,757	+				-0.8
3,477,765	-				-1.1
3,477,800	+				-0.4
3,477,839	+		MIT1002_03125	0.20	-0.4
3,477,847	-		MIT1002_03125	0.23	+0.2
3,477,847	-		MIT1002_03125	0.23	+0.1
3,477,847	-		MIT1002_03125	0.23	-1.3
3,477,930	+		MIT1002_03125	0.53	+0.9
3,477,963	-		MIT1002_03125	0.66	+0.6
3,477,974	+		MIT1002_03125	0.70	-1.0
3,477,974	+		MIT1002_03125	0.70	+0.0
3,477,990	+		MIT1002_03125	0.75	-0.7
3,477,994	-		MIT1002_03125	0.77	+3.3
3,477,995	-		MIT1002_03125	0.77	+1.1
3,477,999	-		MIT1002_03125	0.79	+0.4
3,477,999	-		MIT1002_03125	0.79	-2.1
3,478,026	+		MIT1002_03125	0.89	+0.0
3,478,093	-				+1.1
3,478,242	+				+1.1
3,478,244	+				+0.7
3,478,321	-				+0.2
3,478,514	+		MIT1002_03126	0.14	+0.1
3,478,522	-		MIT1002_03126	0.15	-1.5
3,478,539	+		MIT1002_03126	0.15	+1.7
3,478,547	-		MIT1002_03126	0.16	+3.3
3,478,547	-		MIT1002_03126	0.16	-0.7
3,478,547	-		MIT1002_03126	0.16	-1.5
3,478,547	-		MIT1002_03126	0.16	-1.5
3,478,587	+		MIT1002_03126	0.17	-1.2
3,478,595	-		MIT1002_03126	0.18	+1.1
3,478,619	+		MIT1002_03126	0.19	+1.1
3,478,622	-		MIT1002_03126	0.19	-1.5
3,478,631	+		MIT1002_03126	0.19	-0.4
3,478,639	+		MIT1002_03126	0.20	+0.4
3,478,655	-		MIT1002_03126	0.20	-1.0
3,478,736	+		MIT1002_03126	0.24	+0.8
3,478,744	-		MIT1002_03126	0.24	-1.2
3,478,875	-		MIT1002_03126	0.30	-0.6
3,478,909	+		MIT1002_03126	0.31	+0.5
3,478,939	+		MIT1002_03126	0.33	+0.6
3,478,947	-		MIT1002_03126	0.33	+0.4
3,478,976	+		MIT1002_03126	0.34	+0.8
3,478,988	-		MIT1002_03126	0.35	-0.2
3,479,039	-		MIT1002_03126	0.37	-0.2
3,479,039	-		MIT1002_03126	0.37	-0.1
3,479,081	+		MIT1002_03126	0.39	+1.1
3,479,107	-		MIT1002_03126	0.40	+0.2
3,479,260	-		MIT1002_03126	0.46	-0.5
3,479,281	+		MIT1002_03126	0.47	+0.3
3,479,379	+		MIT1002_03126	0.52	-0.5
3,479,379	+		MIT1002_03126	0.52	+0.3
3,479,382	-		MIT1002_03126	0.52	-2.1
3,479,387	-		MIT1002_03126	0.52	+0.4
3,479,387	-		MIT1002_03126	0.52	-0.4
3,479,392	-		MIT1002_03126	0.52	+2.1
3,479,392	-		MIT1002_03126	0.52	-1.8
3,479,392	-		MIT1002_03126	0.52	-0.1
3,479,407	+		MIT1002_03126	0.53	+2.6
3,479,407	+		MIT1002_03126	0.53	-0.5
3,479,417	+		MIT1002_03126	0.53	+0.5
3,479,417	+		MIT1002_03126	0.53	+2.0
3,479,417	+		MIT1002_03126	0.53	-0.3
3,479,425	-		MIT1002_03126	0.54	-2.2
3,479,521	+		MIT1002_03126	0.58	-0.4
3,479,529	-		MIT1002_03126	0.58	-2.4
3,479,559	+		MIT1002_03126	0.59	-0.5
3,479,559	+		MIT1002_03126	0.59	+0.2
3,479,560	+		MIT1002_03126	0.59	-0.3
3,479,610	-		MIT1002_03126	0.62	-1.0
3,479,675	+		MIT1002_03126	0.64	+0.8
3,479,675	+		MIT1002_03126	0.64	-0.9
3,479,675	+		MIT1002_03126	0.64	-0.2
3,479,682	+		MIT1002_03126	0.65	+0.5
3,479,683	-		MIT1002_03126	0.65	-3.1
3,479,685	-		MIT1002_03126	0.65	-1.0
3,479,840	-		MIT1002_03126	0.71	-0.9
3,479,897	+		MIT1002_03126	0.74	-1.7
3,479,959	+		MIT1002_03126	0.77	-0.0
3,479,959	+		MIT1002_03126	0.77	+1.8
3,479,967	-		MIT1002_03126	0.77	-0.5
3,479,967	-		MIT1002_03126	0.77	+1.5
3,480,014	-		MIT1002_03126	0.79	-0.8
3,480,035	-		MIT1002_03126	0.80	+1.0
3,480,120	+		MIT1002_03126	0.84	+1.2
3,480,120	+		MIT1002_03126	0.84	+2.0
3,480,121	-		MIT1002_03126	0.84	+0.0
3,480,126	+		MIT1002_03126	0.84	+1.1
3,480,128	-		MIT1002_03126	0.84	+0.6
3,480,129	-		MIT1002_03126	0.84	+0.0
3,480,132	+		MIT1002_03126	0.84	-1.0
3,480,140	-		MIT1002_03126	0.84	-0.6
3,480,219	+		MIT1002_03126	0.88	-2.7
3,480,258	+		MIT1002_03126	0.89	-0.6
3,480,268	-		MIT1002_03126	0.90	-0.3
3,480,436	-				+2.4
3,480,452	+				+0.7
3,480,491	-				-0.1
3,480,491	-				+0.3
3,480,503	+				-1.3
3,480,503	+				-1.1
3,480,511	-				-0.3
3,480,522	+				-2.6
3,480,529	-				+0.6
3,480,837	+				+0.6
3,480,837	+				-0.7
3,480,844	+				+1.0
3,480,877	+				-2.7
3,480,901	-				-1.9
3,480,901	-				-1.5
3,481,022	-				-0.2
3,481,202	+		MIT1002_03127	0.17	-0.6
3,481,233	-		MIT1002_03127	0.51	-0.6
3,481,358	-				-0.1
3,481,368	-				-1.2
3,481,380	+				-0.9
3,481,417	-				-0.7
3,481,428	+				+0.3
3,481,453	-				-1.9