Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02276

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 4
2,533,823	+				+0.6
2,533,823	+				+1.0
2,533,831	-				+0.1
2,533,831	-				-0.1
2,533,951	-				-1.3
2,533,951	-				+1.1
2,533,967	+				-0.0
2,533,975	-				+0.8
2,534,015	-				+0.8
2,534,036	+		MIT1002_02275	0.12	+0.1
2,534,036	+		MIT1002_02275	0.12	-0.3
2,534,044	-		MIT1002_02275	0.13	+1.2
2,534,123	+		MIT1002_02275	0.23	+0.1
2,534,125	+		MIT1002_02275	0.23	-0.3
2,534,133	-		MIT1002_02275	0.24	+1.8
2,534,152	-		MIT1002_02275	0.27	+2.0
2,534,170	+		MIT1002_02275	0.29	-1.4
2,534,269	-		MIT1002_02275	0.42	+0.7
2,534,299	-		MIT1002_02275	0.46	-1.5
2,534,345	+		MIT1002_02275	0.52	+0.1
2,534,490	+		MIT1002_02275	0.71	-0.4
2,534,490	+		MIT1002_02275	0.71	+0.2
2,534,490	+		MIT1002_02275	0.71	+0.2
2,534,495	+		MIT1002_02275	0.71	+0.8
2,534,498	-		MIT1002_02275	0.72	-1.7
2,534,498	-		MIT1002_02275	0.72	+0.4
2,534,498	-		MIT1002_02275	0.72	+0.1
2,534,503	-		MIT1002_02275	0.73	+0.0
2,534,515	+		MIT1002_02275	0.74	-0.1
2,534,523	-		MIT1002_02275	0.75	+0.7
2,534,537	-		MIT1002_02275	0.77	+1.2
2,534,616	-		MIT1002_02275	0.87	+0.4
2,534,641	+				-0.6
2,534,644	-				+0.0
2,534,716	+				+0.6
2,534,772	+				+0.3
2,534,909	-				+0.0
2,534,932	-				+1.0
2,534,941	+				-0.1
2,535,061	-		MIT1002_02276	0.15	-0.9
2,535,108	-		MIT1002_02276	0.18	-0.3
2,535,170	-		MIT1002_02276	0.21	+0.5
2,535,239	+		MIT1002_02276	0.25	-0.4
2,535,248	-		MIT1002_02276	0.25	+1.6
2,535,278	+		MIT1002_02276	0.27	-0.8
2,535,305	+		MIT1002_02276	0.29	+0.7
2,535,305	+		MIT1002_02276	0.29	+1.0
2,535,305	+		MIT1002_02276	0.29	+0.8
2,535,320	+		MIT1002_02276	0.29	-0.0
2,535,324	+		MIT1002_02276	0.30	+1.6
2,535,324	+		MIT1002_02276	0.30	-2.5
2,535,332	-		MIT1002_02276	0.30	+0.6
2,535,522	-		MIT1002_02276	0.41	-0.3
2,535,575	+		MIT1002_02276	0.44	+0.5
2,535,583	-		MIT1002_02276	0.44	+0.9
2,535,681	+		MIT1002_02276	0.49	-0.1
2,535,690	-		MIT1002_02276	0.50	+1.5
2,535,690	-		MIT1002_02276	0.50	+1.5
2,535,729	+		MIT1002_02276	0.52	-0.6
2,535,737	-		MIT1002_02276	0.53	-0.3
2,535,744	-		MIT1002_02276	0.53	+0.9
2,535,789	+		MIT1002_02276	0.55	-2.2
2,535,789	+		MIT1002_02276	0.55	+1.2
2,535,797	-		MIT1002_02276	0.56	-0.2
2,535,805	+		MIT1002_02276	0.56	+1.1
2,535,831	+		MIT1002_02276	0.58	-0.1
2,535,836	+		MIT1002_02276	0.58	-0.7
2,535,845	+		MIT1002_02276	0.59	-0.4
2,535,846	+		MIT1002_02276	0.59	-0.1
2,535,853	-		MIT1002_02276	0.59	-0.6
2,535,853	-		MIT1002_02276	0.59	-1.0
2,535,853	-		MIT1002_02276	0.59	+0.9
2,535,853	-		MIT1002_02276	0.59	-0.4
2,535,854	-		MIT1002_02276	0.59	+0.3
2,535,854	-		MIT1002_02276	0.59	-0.3
2,535,854	-		MIT1002_02276	0.59	-0.5
2,535,858	+		MIT1002_02276	0.59	-0.2
2,535,863	+		MIT1002_02276	0.60	+1.1
2,535,871	-		MIT1002_02276	0.60	+1.2
2,535,871	-		MIT1002_02276	0.60	-0.3
2,535,871	-		MIT1002_02276	0.60	+0.1
2,535,871	-		MIT1002_02276	0.60	-0.2
2,535,871	-		MIT1002_02276	0.60	+0.2
2,535,871	-		MIT1002_02276	0.60	-1.1
2,535,873	+		MIT1002_02276	0.60	-0.8
2,535,876	-		MIT1002_02276	0.60	+0.2
2,535,876	-		MIT1002_02276	0.60	+0.4
2,535,957	+		MIT1002_02276	0.65	+1.7
2,536,111	-		MIT1002_02276	0.73	-1.0
2,536,176	+		MIT1002_02276	0.77	+9.4
2,536,271	+		MIT1002_02276	0.82	+0.2
2,536,284	-		MIT1002_02276	0.83	-1.9
2,536,353	+		MIT1002_02276	0.87	+0.1
2,536,379	+		MIT1002_02276	0.88	-0.2
2,536,464	+				-0.9
2,536,492	-				+1.7
2,536,492	-				+0.9
2,536,494	+				+0.8
2,536,494	+				+0.2
2,536,523	+				-0.6
2,536,533	+				-0.5
2,536,533	+				+1.0
2,536,541	-				-0.9
2,536,541	-				-0.4
2,536,541	-				+0.0
2,536,541	-				+1.8
2,536,541	-				-1.7
2,536,541	-				-0.5
2,536,543	+				+1.2
2,536,596	+				+2.2
2,536,596	+				+1.4
2,536,596	+				+0.7
2,536,596	+				-2.9
2,536,596	+				+0.1
2,536,596	-				-0.6
2,536,604	-				+0.8
2,536,604	-				-0.3
2,536,749	+				-0.9
2,536,749	+				+0.0
2,536,828	+				-0.2
2,536,836	-		MIT1002_02277	0.10	+2.5
2,536,836	-		MIT1002_02277	0.10	-0.4
2,536,868	-		MIT1002_02277	0.13	+1.1
2,536,880	-		MIT1002_02277	0.15	+0.4
2,536,880	-		MIT1002_02277	0.15	+0.7
2,536,921	+		MIT1002_02277	0.19	-0.1
2,536,929	-		MIT1002_02277	0.20	-0.3
2,536,936	-		MIT1002_02277	0.20	+0.2
2,536,972	+		MIT1002_02277	0.24	+0.2
2,536,993	+		MIT1002_02277	0.26	+1.3
2,537,025	-		MIT1002_02277	0.29	+0.7
2,537,046	+		MIT1002_02277	0.31	-1.3
2,537,054	-		MIT1002_02277	0.32	-0.0
2,537,104	-		MIT1002_02277	0.37	-2.4
2,537,344	-		MIT1002_02277	0.62	-1.0
2,537,346	+		MIT1002_02277	0.62	-2.8
2,537,354	-		MIT1002_02277	0.63	-0.1
2,537,354	-		MIT1002_02277	0.63	+0.4
2,537,354	-		MIT1002_02277	0.63	+0.0
2,537,354	-		MIT1002_02277	0.63	+2.1
2,537,365	+		MIT1002_02277	0.64	+0.5
2,537,401	+		MIT1002_02277	0.67	+0.4
2,537,409	-		MIT1002_02277	0.68	+0.0
2,537,468	+		MIT1002_02277	0.74	-0.3
2,537,476	-		MIT1002_02277	0.75	+0.8
2,537,481	+		MIT1002_02277	0.75	-1.3
2,537,501	+		MIT1002_02277	0.77	-0.0
2,537,503	+		MIT1002_02277	0.78	+0.7
2,537,511	-		MIT1002_02277	0.78	+1.2
2,537,511	-		MIT1002_02277	0.78	+1.4
2,537,511	-		MIT1002_02277	0.78	-1.9
2,537,511	-		MIT1002_02277	0.78	+0.5
2,537,539	-		MIT1002_02277	0.81	-0.2
2,537,577	-		MIT1002_02277	0.85	+0.8