Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01494

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_01492 and MIT1002_01493 are separated by 50 nucleotidesMIT1002_01493 and MIT1002_01494 are separated by 171 nucleotidesMIT1002_01494 and MIT1002_01495 are separated by 319 nucleotidesMIT1002_01495 and MIT1002_01496 are separated by 4 nucleotidesMIT1002_01496 and MIT1002_01497 are separated by 34 nucleotidesMIT1002_01497 and MIT1002_01498 are separated by 52 nucleotidesMIT1002_01498 and MIT1002_01499 are separated by 2 nucleotidesMIT1002_01499 and MIT1002_01500 are separated by 34 nucleotidesMIT1002_01500 and MIT1002_01501 are separated by 4 nucleotides MIT1002_01492: MIT1002_01492 - Flavin reductase like domain protein, at 1,650,381 to 1,651,001 _01492 MIT1002_01493: MIT1002_01493 - anti-sigma factor, putative, ChrR family, at 1,651,052 to 1,651,708 _01493 MIT1002_01494: MIT1002_01494 - Amino-acid carrier protein AlsT, at 1,651,880 to 1,653,286 _01494 MIT1002_01495: MIT1002_01495 - tRNA-Gln, at 1,653,606 to 1,653,681 _01495 MIT1002_01496: MIT1002_01496 - tRNA-Leu, at 1,653,686 to 1,653,770 _01496 MIT1002_01497: MIT1002_01497 - tRNA-Met, at 1,653,805 to 1,653,881 _01497 MIT1002_01498: MIT1002_01498 - tRNA-Gln, at 1,653,934 to 1,654,009 _01498 MIT1002_01499: MIT1002_01499 - tRNA-Leu, at 1,654,012 to 1,654,096 _01499 MIT1002_01500: MIT1002_01500 - tRNA-Gln, at 1,654,131 to 1,654,206 _01500 MIT1002_01501: MIT1002_01501 - tRNA-Leu, at 1,654,211 to 1,654,295 _01501 Position (kb) 1651 1652 1653 1654Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1650.986 kb on + strandat 1650.986 kb on + strandat 1650.986 kb on + strandat 1650.991 kb on + strandat 1650.994 kb on - strandat 1650.994 kb on - strandat 1651.122 kb on + strand, within MIT1002_01493at 1651.128 kb on - strand, within MIT1002_01493at 1651.130 kb on - strand, within MIT1002_01493at 1651.140 kb on + strand, within MIT1002_01493at 1651.142 kb on + strand, within MIT1002_01493at 1651.148 kb on - strand, within MIT1002_01493at 1651.236 kb on - strand, within MIT1002_01493at 1651.313 kb on + strand, within MIT1002_01493at 1651.401 kb on + strand, within MIT1002_01493at 1651.401 kb on + strand, within MIT1002_01493at 1651.439 kb on + strand, within MIT1002_01493at 1651.457 kb on - strand, within MIT1002_01493at 1651.481 kb on - strand, within MIT1002_01493at 1651.501 kb on - strand, within MIT1002_01493at 1651.528 kb on - strand, within MIT1002_01493at 1651.530 kb on - strand, within MIT1002_01493at 1651.608 kb on + strand, within MIT1002_01493at 1651.608 kb on + strand, within MIT1002_01493at 1651.608 kb on - strand, within MIT1002_01493at 1651.616 kb on - strand, within MIT1002_01493at 1651.616 kb on - strand, within MIT1002_01493at 1651.623 kb on + strand, within MIT1002_01493at 1651.625 kb on + strand, within MIT1002_01493at 1651.631 kb on - strand, within MIT1002_01493at 1651.639 kb on + strand, within MIT1002_01493at 1651.675 kb on + strandat 1651.708 kb on - strandat 1651.708 kb on - strandat 1651.830 kb on - strandat 1651.879 kb on - strandat 1651.920 kb on - strandat 1651.920 kb on - strandat 1652.002 kb on - strandat 1652.030 kb on - strand, within MIT1002_01494at 1652.036 kb on + strand, within MIT1002_01494at 1652.042 kb on + strand, within MIT1002_01494at 1652.050 kb on - strand, within MIT1002_01494at 1652.050 kb on - strand, within MIT1002_01494at 1652.050 kb on - strand, within MIT1002_01494at 1652.064 kb on + strand, within MIT1002_01494at 1652.064 kb on + strand, within MIT1002_01494at 1652.075 kb on + strand, within MIT1002_01494at 1652.162 kb on - strand, within MIT1002_01494at 1652.200 kb on + strand, within MIT1002_01494at 1652.200 kb on + strand, within MIT1002_01494at 1652.247 kb on + strand, within MIT1002_01494at 1652.263 kb on + strand, within MIT1002_01494at 1652.266 kb on - strand, within MIT1002_01494at 1652.290 kb on + strand, within MIT1002_01494at 1652.298 kb on - strand, within MIT1002_01494at 1652.298 kb on - strand, within MIT1002_01494at 1652.347 kb on + strand, within MIT1002_01494at 1652.347 kb on + strand, within MIT1002_01494at 1652.347 kb on - strand, within MIT1002_01494at 1652.362 kb on + strand, within MIT1002_01494at 1652.405 kb on - strand, within MIT1002_01494at 1652.419 kb on + strand, within MIT1002_01494at 1652.450 kb on + strand, within MIT1002_01494at 1652.455 kb on + strand, within MIT1002_01494at 1652.455 kb on + strand, within MIT1002_01494at 1652.458 kb on - strand, within MIT1002_01494at 1652.462 kb on + strand, within MIT1002_01494at 1652.463 kb on - strand, within MIT1002_01494at 1652.463 kb on - strand, within MIT1002_01494at 1652.463 kb on - strand, within MIT1002_01494at 1652.463 kb on - strand, within MIT1002_01494at 1652.609 kb on + strand, within MIT1002_01494at 1652.702 kb on + strand, within MIT1002_01494at 1652.702 kb on + strand, within MIT1002_01494at 1652.710 kb on - strand, within MIT1002_01494at 1652.710 kb on - strand, within MIT1002_01494at 1652.740 kb on - strand, within MIT1002_01494at 1652.789 kb on + strand, within MIT1002_01494at 1652.789 kb on + strand, within MIT1002_01494at 1652.797 kb on - strand, within MIT1002_01494at 1652.797 kb on - strand, within MIT1002_01494at 1652.821 kb on - strand, within MIT1002_01494at 1652.906 kb on - strand, within MIT1002_01494at 1652.940 kb on + strand, within MIT1002_01494at 1652.960 kb on + strand, within MIT1002_01494at 1652.966 kb on + strand, within MIT1002_01494at 1653.030 kb on - strand, within MIT1002_01494at 1653.066 kb on - strand, within MIT1002_01494at 1653.113 kb on - strand, within MIT1002_01494at 1653.129 kb on - strand, within MIT1002_01494at 1653.136 kb on + strand, within MIT1002_01494at 1653.170 kb on - strandat 1653.184 kb on + strandat 1653.190 kb on + strandat 1653.192 kb on - strandat 1653.198 kb on - strandat 1653.198 kb on - strandat 1653.215 kb on - strandat 1653.215 kb on - strandat 1653.229 kb on + strandat 1653.232 kb on - strandat 1653.334 kb on + strandat 1653.347 kb on - strandat 1653.347 kb on - strandat 1653.347 kb on - strandat 1653.347 kb on - strandat 1653.350 kb on - strandat 1653.532 kb on + strandat 1653.709 kb on - strand, within MIT1002_01496at 1653.787 kb on - strandat 1653.856 kb on + strand, within MIT1002_01497

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 4
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1,650,986 + +0.9
1,650,986 + -0.4
1,650,986 + +0.6
1,650,991 + +0.2
1,650,994 - +0.6
1,650,994 - +1.4
1,651,122 + MIT1002_01493 0.11 +0.1
1,651,128 - MIT1002_01493 0.12 -0.9
1,651,130 - MIT1002_01493 0.12 +0.6
1,651,140 + MIT1002_01493 0.13 +0.3
1,651,142 + MIT1002_01493 0.14 -0.0
1,651,148 - MIT1002_01493 0.15 +0.4
1,651,236 - MIT1002_01493 0.28 +1.4
1,651,313 + MIT1002_01493 0.40 -0.6
1,651,401 + MIT1002_01493 0.53 +1.1
1,651,401 + MIT1002_01493 0.53 +0.8
1,651,439 + MIT1002_01493 0.59 +1.1
1,651,457 - MIT1002_01493 0.62 +1.1
1,651,481 - MIT1002_01493 0.65 +0.5
1,651,501 - MIT1002_01493 0.68 +0.3
1,651,528 - MIT1002_01493 0.72 -0.9
1,651,530 - MIT1002_01493 0.73 +1.3
1,651,608 + MIT1002_01493 0.85 +0.2
1,651,608 + MIT1002_01493 0.85 +1.6
1,651,608 - MIT1002_01493 0.85 +0.3
1,651,616 - MIT1002_01493 0.86 -0.7
1,651,616 - MIT1002_01493 0.86 -0.0
1,651,623 + MIT1002_01493 0.87 +0.2
1,651,625 + MIT1002_01493 0.87 +2.2
1,651,631 - MIT1002_01493 0.88 +1.1
1,651,639 + MIT1002_01493 0.89 +0.7
1,651,675 + -0.9
1,651,708 - +0.1
1,651,708 - +1.6
1,651,830 - -1.2
1,651,879 - -0.3
1,651,920 - -2.9
1,651,920 - -0.5
1,652,002 - +0.7
1,652,030 - MIT1002_01494 0.11 -1.4
1,652,036 + MIT1002_01494 0.11 +0.3
1,652,042 + MIT1002_01494 0.12 -0.1
1,652,050 - MIT1002_01494 0.12 -1.6
1,652,050 - MIT1002_01494 0.12 +1.4
1,652,050 - MIT1002_01494 0.12 -1.1
1,652,064 + MIT1002_01494 0.13 -3.3
1,652,064 + MIT1002_01494 0.13 +0.5
1,652,075 + MIT1002_01494 0.14 +0.0
1,652,162 - MIT1002_01494 0.20 -1.9
1,652,200 + MIT1002_01494 0.23 -0.5
1,652,200 + MIT1002_01494 0.23 +1.0
1,652,247 + MIT1002_01494 0.26 -0.8
1,652,263 + MIT1002_01494 0.27 +0.5
1,652,266 - MIT1002_01494 0.27 -2.7
1,652,290 + MIT1002_01494 0.29 -0.5
1,652,298 - MIT1002_01494 0.30 -0.3
1,652,298 - MIT1002_01494 0.30 +0.5
1,652,347 + MIT1002_01494 0.33 +0.2
1,652,347 + MIT1002_01494 0.33 +0.6
1,652,347 - MIT1002_01494 0.33 +0.1
1,652,362 + MIT1002_01494 0.34 +1.7
1,652,405 - MIT1002_01494 0.37 +0.1
1,652,419 + MIT1002_01494 0.38 +0.3
1,652,450 + MIT1002_01494 0.41 +0.0
1,652,455 + MIT1002_01494 0.41 -0.5
1,652,455 + MIT1002_01494 0.41 +0.8
1,652,458 - MIT1002_01494 0.41 +0.1
1,652,462 + MIT1002_01494 0.41 -0.9
1,652,463 - MIT1002_01494 0.41 -1.8
1,652,463 - MIT1002_01494 0.41 -1.8
1,652,463 - MIT1002_01494 0.41 -1.6
1,652,463 - MIT1002_01494 0.41 +0.4
1,652,609 + MIT1002_01494 0.52 +0.4
1,652,702 + MIT1002_01494 0.58 -0.4
1,652,702 + MIT1002_01494 0.58 +0.4
1,652,710 - MIT1002_01494 0.59 -2.9
1,652,710 - MIT1002_01494 0.59 -0.3
1,652,740 - MIT1002_01494 0.61 +0.5
1,652,789 + MIT1002_01494 0.65 -0.9
1,652,789 + MIT1002_01494 0.65 +0.3
1,652,797 - MIT1002_01494 0.65 +1.0
1,652,797 - MIT1002_01494 0.65 -0.8
1,652,821 - MIT1002_01494 0.67 +1.1
1,652,906 - MIT1002_01494 0.73 -0.8
1,652,940 + MIT1002_01494 0.75 +0.3
1,652,960 + MIT1002_01494 0.77 -1.9
1,652,966 + MIT1002_01494 0.77 +0.1
1,653,030 - MIT1002_01494 0.82 +1.1
1,653,066 - MIT1002_01494 0.84 +0.5
1,653,113 - MIT1002_01494 0.88 -0.1
1,653,129 - MIT1002_01494 0.89 +0.9
1,653,136 + MIT1002_01494 0.89 +0.7
1,653,170 - -0.7
1,653,184 + -0.4
1,653,190 + -1.9
1,653,192 - -2.3
1,653,198 - -2.2
1,653,198 - +0.1
1,653,215 - +0.3
1,653,215 - +0.1
1,653,229 + +1.9
1,653,232 - -0.9
1,653,334 + +0.3
1,653,347 - +1.2
1,653,347 - +1.0
1,653,347 - -1.2
1,653,347 - +0.2
1,653,350 - +1.4
1,653,532 + -0.3
1,653,709 - MIT1002_01496 0.27 +1.0
1,653,787 - -0.2
1,653,856 + MIT1002_01497 0.66 +0.5

Or see this region's nucleotide sequence