Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01305

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_01304 and MIT1002_01305 are separated by 131 nucleotidesMIT1002_01305 and MIT1002_01306 are separated by 191 nucleotidesMIT1002_01306 and MIT1002_01307 are separated by 25 nucleotides MIT1002_01304: MIT1002_01304 - Multidrug transporter MdtA, at 1,451,005 to 1,452,063 _01304 MIT1002_01305: MIT1002_01305 - Putative multidrug export ATP-binding/permease protein, at 1,452,195 to 1,454,003 _01305 MIT1002_01306: MIT1002_01306 - Protein-disulfide isomerase, at 1,454,195 to 1,454,869 _01306 MIT1002_01307: MIT1002_01307 - hypothetical protein, at 1,454,895 to 1,455,389 _01307 Position (kb) 1452 1453 1454 1455Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1451.217 kb on - strand, within MIT1002_01304at 1451.268 kb on + strand, within MIT1002_01304at 1451.283 kb on - strand, within MIT1002_01304at 1451.288 kb on - strand, within MIT1002_01304at 1451.362 kb on + strand, within MIT1002_01304at 1451.370 kb on - strand, within MIT1002_01304at 1451.451 kb on - strand, within MIT1002_01304at 1451.497 kb on - strand, within MIT1002_01304at 1451.499 kb on + strand, within MIT1002_01304at 1451.556 kb on + strand, within MIT1002_01304at 1451.562 kb on - strand, within MIT1002_01304at 1451.564 kb on - strand, within MIT1002_01304at 1451.643 kb on - strand, within MIT1002_01304at 1451.706 kb on + strand, within MIT1002_01304at 1451.714 kb on - strand, within MIT1002_01304at 1451.714 kb on - strand, within MIT1002_01304at 1451.719 kb on - strand, within MIT1002_01304at 1451.858 kb on + strand, within MIT1002_01304at 1451.860 kb on + strand, within MIT1002_01304at 1451.890 kb on - strand, within MIT1002_01304at 1451.896 kb on - strand, within MIT1002_01304at 1451.896 kb on - strand, within MIT1002_01304at 1451.944 kb on - strand, within MIT1002_01304at 1451.969 kb on + strandat 1451.969 kb on + strandat 1451.977 kb on - strandat 1452.029 kb on - strandat 1452.041 kb on + strandat 1452.078 kb on - strandat 1452.081 kb on + strandat 1452.081 kb on + strandat 1452.081 kb on + strandat 1452.089 kb on - strandat 1452.089 kb on - strandat 1452.171 kb on + strandat 1452.176 kb on + strandat 1452.176 kb on + strandat 1452.184 kb on - strandat 1452.223 kb on + strandat 1452.226 kb on + strandat 1452.233 kb on + strandat 1452.241 kb on - strandat 1452.241 kb on - strandat 1452.276 kb on + strandat 1452.279 kb on - strandat 1452.362 kb on + strandat 1452.380 kb on - strand, within MIT1002_01305at 1452.398 kb on + strand, within MIT1002_01305at 1452.461 kb on - strand, within MIT1002_01305at 1452.461 kb on - strand, within MIT1002_01305at 1452.519 kb on + strand, within MIT1002_01305at 1452.542 kb on + strand, within MIT1002_01305at 1452.542 kb on + strand, within MIT1002_01305at 1452.542 kb on + strand, within MIT1002_01305at 1452.542 kb on + strand, within MIT1002_01305at 1452.549 kb on - strand, within MIT1002_01305at 1452.550 kb on - strand, within MIT1002_01305at 1452.550 kb on - strand, within MIT1002_01305at 1452.611 kb on + strand, within MIT1002_01305at 1452.611 kb on + strand, within MIT1002_01305at 1452.657 kb on + strand, within MIT1002_01305at 1452.665 kb on - strand, within MIT1002_01305at 1452.709 kb on - strand, within MIT1002_01305at 1452.730 kb on + strand, within MIT1002_01305at 1452.730 kb on + strand, within MIT1002_01305at 1452.738 kb on - strand, within MIT1002_01305at 1452.816 kb on + strand, within MIT1002_01305at 1452.819 kb on - strand, within MIT1002_01305at 1452.965 kb on - strand, within MIT1002_01305at 1452.987 kb on + strand, within MIT1002_01305at 1452.987 kb on + strand, within MIT1002_01305at 1452.987 kb on + strand, within MIT1002_01305at 1452.987 kb on + strand, within MIT1002_01305at 1452.995 kb on - strand, within MIT1002_01305at 1452.995 kb on - strand, within MIT1002_01305at 1452.997 kb on - strand, within MIT1002_01305at 1453.025 kb on + strand, within MIT1002_01305at 1453.025 kb on + strand, within MIT1002_01305at 1453.030 kb on + strand, within MIT1002_01305at 1453.040 kb on - strand, within MIT1002_01305at 1453.055 kb on + strand, within MIT1002_01305at 1453.079 kb on - strand, within MIT1002_01305at 1453.084 kb on - strand, within MIT1002_01305at 1453.157 kb on - strand, within MIT1002_01305at 1453.168 kb on - strand, within MIT1002_01305at 1453.168 kb on - strand, within MIT1002_01305at 1453.173 kb on + strand, within MIT1002_01305at 1453.173 kb on + strand, within MIT1002_01305at 1453.173 kb on + strand, within MIT1002_01305at 1453.178 kb on + strand, within MIT1002_01305at 1453.181 kb on - strand, within MIT1002_01305at 1453.245 kb on + strand, within MIT1002_01305at 1453.294 kb on + strand, within MIT1002_01305at 1453.303 kb on - strand, within MIT1002_01305at 1453.339 kb on + strand, within MIT1002_01305at 1453.339 kb on + strand, within MIT1002_01305at 1453.339 kb on + strand, within MIT1002_01305at 1453.339 kb on + strand, within MIT1002_01305at 1453.339 kb on + strand, within MIT1002_01305at 1453.339 kb on + strand, within MIT1002_01305at 1453.347 kb on + strand, within MIT1002_01305at 1453.347 kb on - strand, within MIT1002_01305at 1453.347 kb on - strand, within MIT1002_01305at 1453.347 kb on - strand, within MIT1002_01305at 1453.347 kb on - strand, within MIT1002_01305at 1453.347 kb on - strand, within MIT1002_01305at 1453.347 kb on - strand, within MIT1002_01305at 1453.347 kb on - strand, within MIT1002_01305at 1453.347 kb on - strand, within MIT1002_01305at 1453.347 kb on - strand, within MIT1002_01305at 1453.347 kb on - strand, within MIT1002_01305at 1453.347 kb on - strand, within MIT1002_01305at 1453.347 kb on - strand, within MIT1002_01305at 1453.352 kb on - strand, within MIT1002_01305at 1453.461 kb on + strand, within MIT1002_01305at 1453.510 kb on + strand, within MIT1002_01305at 1453.647 kb on - strand, within MIT1002_01305at 1453.708 kb on + strand, within MIT1002_01305at 1453.708 kb on + strand, within MIT1002_01305at 1453.775 kb on - strand, within MIT1002_01305at 1453.783 kb on - strand, within MIT1002_01305at 1453.788 kb on + strand, within MIT1002_01305at 1453.788 kb on + strand, within MIT1002_01305at 1453.788 kb on + strand, within MIT1002_01305at 1453.796 kb on - strand, within MIT1002_01305at 1453.796 kb on - strand, within MIT1002_01305at 1453.809 kb on - strand, within MIT1002_01305at 1453.839 kb on + strandat 1453.870 kb on + strandat 1453.878 kb on - strandat 1453.938 kb on + strandat 1453.946 kb on - strandat 1454.135 kb on - strandat 1454.138 kb on + strandat 1454.228 kb on - strandat 1454.285 kb on + strand, within MIT1002_01306at 1454.298 kb on + strand, within MIT1002_01306at 1454.306 kb on - strand, within MIT1002_01306at 1454.306 kb on - strand, within MIT1002_01306at 1454.394 kb on + strand, within MIT1002_01306at 1454.396 kb on + strand, within MIT1002_01306at 1454.396 kb on + strand, within MIT1002_01306at 1454.410 kb on + strand, within MIT1002_01306at 1454.464 kb on + strand, within MIT1002_01306at 1454.548 kb on + strand, within MIT1002_01306at 1454.569 kb on + strand, within MIT1002_01306at 1454.576 kb on - strand, within MIT1002_01306at 1454.650 kb on + strand, within MIT1002_01306at 1454.658 kb on - strand, within MIT1002_01306at 1454.660 kb on + strand, within MIT1002_01306at 1454.668 kb on - strand, within MIT1002_01306at 1454.734 kb on - strand, within MIT1002_01306at 1454.780 kb on - strand, within MIT1002_01306at 1454.825 kb on + strandat 1454.832 kb on + strandat 1454.846 kb on + strandat 1454.847 kb on + strandat 1454.847 kb on + strandat 1454.847 kb on + strandat 1454.847 kb on + strandat 1454.847 kb on + strandat 1454.855 kb on - strandat 1454.855 kb on - strandat 1454.855 kb on - strandat 1454.855 kb on - strandat 1454.855 kb on - strandat 1454.892 kb on + strandat 1454.926 kb on - strandat 1454.933 kb on - strandat 1454.959 kb on - strand, within MIT1002_01307

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 4
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1,451,217 - MIT1002_01304 0.20 -1.0
1,451,268 + MIT1002_01304 0.25 +0.2
1,451,283 - MIT1002_01304 0.26 +0.9
1,451,288 - MIT1002_01304 0.27 +0.3
1,451,362 + MIT1002_01304 0.34 -0.6
1,451,370 - MIT1002_01304 0.34 -0.8
1,451,451 - MIT1002_01304 0.42 +0.4
1,451,497 - MIT1002_01304 0.46 -0.6
1,451,499 + MIT1002_01304 0.47 +0.5
1,451,556 + MIT1002_01304 0.52 +2.0
1,451,562 - MIT1002_01304 0.53 -0.1
1,451,564 - MIT1002_01304 0.53 +1.5
1,451,643 - MIT1002_01304 0.60 +1.3
1,451,706 + MIT1002_01304 0.66 +0.0
1,451,714 - MIT1002_01304 0.67 -0.9
1,451,714 - MIT1002_01304 0.67 +4.7
1,451,719 - MIT1002_01304 0.67 -0.1
1,451,858 + MIT1002_01304 0.81 +0.5
1,451,860 + MIT1002_01304 0.81 +2.3
1,451,890 - MIT1002_01304 0.84 -0.7
1,451,896 - MIT1002_01304 0.84 -0.7
1,451,896 - MIT1002_01304 0.84 +0.0
1,451,944 - MIT1002_01304 0.89 +0.6
1,451,969 + -0.6
1,451,969 + +2.0
1,451,977 - -0.2
1,452,029 - +0.2
1,452,041 + +1.0
1,452,078 - -2.0
1,452,081 + -1.3
1,452,081 + +0.9
1,452,081 + +1.0
1,452,089 - -0.3
1,452,089 - +0.3
1,452,171 + -2.3
1,452,176 + -1.2
1,452,176 + -1.3
1,452,184 - +0.5
1,452,223 + -1.8
1,452,226 + -0.8
1,452,233 + +1.6
1,452,241 - +0.9
1,452,241 - -1.6
1,452,276 + +0.1
1,452,279 - -0.3
1,452,362 + -0.2
1,452,380 - MIT1002_01305 0.10 +0.1
1,452,398 + MIT1002_01305 0.11 -1.3
1,452,461 - MIT1002_01305 0.15 -0.4
1,452,461 - MIT1002_01305 0.15 +0.9
1,452,519 + MIT1002_01305 0.18 -1.5
1,452,542 + MIT1002_01305 0.19 +0.6
1,452,542 + MIT1002_01305 0.19 -1.3
1,452,542 + MIT1002_01305 0.19 -1.8
1,452,542 + MIT1002_01305 0.19 +1.5
1,452,549 - MIT1002_01305 0.20 -0.9
1,452,550 - MIT1002_01305 0.20 +1.5
1,452,550 - MIT1002_01305 0.20 +0.4
1,452,611 + MIT1002_01305 0.23 +0.4
1,452,611 + MIT1002_01305 0.23 +0.3
1,452,657 + MIT1002_01305 0.26 -0.6
1,452,665 - MIT1002_01305 0.26 +0.0
1,452,709 - MIT1002_01305 0.28 +0.8
1,452,730 + MIT1002_01305 0.30 +0.7
1,452,730 + MIT1002_01305 0.30 +0.2
1,452,738 - MIT1002_01305 0.30 +1.2
1,452,816 + MIT1002_01305 0.34 +1.0
1,452,819 - MIT1002_01305 0.34 -0.6
1,452,965 - MIT1002_01305 0.43 -1.2
1,452,987 + MIT1002_01305 0.44 +0.1
1,452,987 + MIT1002_01305 0.44 +0.8
1,452,987 + MIT1002_01305 0.44 -1.9
1,452,987 + MIT1002_01305 0.44 -1.7
1,452,995 - MIT1002_01305 0.44 +0.3
1,452,995 - MIT1002_01305 0.44 -0.6
1,452,997 - MIT1002_01305 0.44 -0.0
1,453,025 + MIT1002_01305 0.46 +2.0
1,453,025 + MIT1002_01305 0.46 +0.3
1,453,030 + MIT1002_01305 0.46 -1.0
1,453,040 - MIT1002_01305 0.47 +1.3
1,453,055 + MIT1002_01305 0.48 -0.2
1,453,079 - MIT1002_01305 0.49 +2.9
1,453,084 - MIT1002_01305 0.49 +0.3
1,453,157 - MIT1002_01305 0.53 +2.5
1,453,168 - MIT1002_01305 0.54 +1.3
1,453,168 - MIT1002_01305 0.54 -0.0
1,453,173 + MIT1002_01305 0.54 +0.4
1,453,173 + MIT1002_01305 0.54 +2.1
1,453,173 + MIT1002_01305 0.54 -1.3
1,453,178 + MIT1002_01305 0.54 -0.2
1,453,181 - MIT1002_01305 0.55 +1.1
1,453,245 + MIT1002_01305 0.58 +2.0
1,453,294 + MIT1002_01305 0.61 +1.4
1,453,303 - MIT1002_01305 0.61 +0.5
1,453,339 + MIT1002_01305 0.63 +0.2
1,453,339 + MIT1002_01305 0.63 -0.2
1,453,339 + MIT1002_01305 0.63 +0.9
1,453,339 + MIT1002_01305 0.63 +0.3
1,453,339 + MIT1002_01305 0.63 -2.4
1,453,339 + MIT1002_01305 0.63 -0.1
1,453,347 + MIT1002_01305 0.64 -0.4
1,453,347 - MIT1002_01305 0.64 -0.1
1,453,347 - MIT1002_01305 0.64 -0.3
1,453,347 - MIT1002_01305 0.64 +1.3
1,453,347 - MIT1002_01305 0.64 -2.4
1,453,347 - MIT1002_01305 0.64 +0.0
1,453,347 - MIT1002_01305 0.64 -0.6
1,453,347 - MIT1002_01305 0.64 -0.6
1,453,347 - MIT1002_01305 0.64 +0.2
1,453,347 - MIT1002_01305 0.64 -0.8
1,453,347 - MIT1002_01305 0.64 +1.1
1,453,347 - MIT1002_01305 0.64 +1.2
1,453,347 - MIT1002_01305 0.64 +1.1
1,453,352 - MIT1002_01305 0.64 +1.0
1,453,461 + MIT1002_01305 0.70 +0.1
1,453,510 + MIT1002_01305 0.73 -1.0
1,453,647 - MIT1002_01305 0.80 +0.5
1,453,708 + MIT1002_01305 0.84 -0.0
1,453,708 + MIT1002_01305 0.84 -0.5
1,453,775 - MIT1002_01305 0.87 -1.0
1,453,783 - MIT1002_01305 0.88 -1.2
1,453,788 + MIT1002_01305 0.88 -0.8
1,453,788 + MIT1002_01305 0.88 -0.1
1,453,788 + MIT1002_01305 0.88 -0.8
1,453,796 - MIT1002_01305 0.89 +0.0
1,453,796 - MIT1002_01305 0.89 -1.3
1,453,809 - MIT1002_01305 0.89 +1.4
1,453,839 + +1.2
1,453,870 + -0.6
1,453,878 - +0.3
1,453,938 + +0.6
1,453,946 - +0.9
1,454,135 - +0.6
1,454,138 + -2.2
1,454,228 - -0.2
1,454,285 + MIT1002_01306 0.13 +1.3
1,454,298 + MIT1002_01306 0.15 -0.0
1,454,306 - MIT1002_01306 0.16 -0.2
1,454,306 - MIT1002_01306 0.16 -2.0
1,454,394 + MIT1002_01306 0.29 -1.6
1,454,396 + MIT1002_01306 0.30 -0.9
1,454,396 + MIT1002_01306 0.30 +0.4
1,454,410 + MIT1002_01306 0.32 +1.3
1,454,464 + MIT1002_01306 0.40 +0.9
1,454,548 + MIT1002_01306 0.52 +1.3
1,454,569 + MIT1002_01306 0.55 +1.0
1,454,576 - MIT1002_01306 0.56 +0.6
1,454,650 + MIT1002_01306 0.67 +0.3
1,454,658 - MIT1002_01306 0.69 +0.8
1,454,660 + MIT1002_01306 0.69 -2.3
1,454,668 - MIT1002_01306 0.70 -2.3
1,454,734 - MIT1002_01306 0.80 -0.4
1,454,780 - MIT1002_01306 0.87 +1.3
1,454,825 + -1.0
1,454,832 + +2.0
1,454,846 + -0.1
1,454,847 + -0.1
1,454,847 + -0.0
1,454,847 + -0.0
1,454,847 + -0.2
1,454,847 + +0.2
1,454,855 - -0.7
1,454,855 - +0.2
1,454,855 - -1.1
1,454,855 - +0.4
1,454,855 - -0.0
1,454,892 + +0.5
1,454,926 - +0.2
1,454,933 - -1.5
1,454,959 - MIT1002_01307 0.13 +0.1

Or see this region's nucleotide sequence