Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00681 and MIT1002_00682 are separated by 36 nucleotides MIT1002_00682 and MIT1002_00683 are separated by 255 nucleotides
MIT1002_00681: MIT1002_00681 - L-lysine 2,3-aminomutase, at 744,558 to 745,583
_00681
MIT1002_00682: MIT1002_00682 - Elongation factor P, at 745,620 to 746,189
_00682
MIT1002_00683: MIT1002_00683 - Elongation factor P--(R)-beta-lysine ligase, at 746,445 to 747,518
_00683
Position (kb) 745
746
747 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 744.749 kb on - strand, within MIT1002_00681 at 744.754 kb on + strand, within MIT1002_00681 at 744.762 kb on - strand, within MIT1002_00681 at 744.836 kb on + strand, within MIT1002_00681 at 744.836 kb on + strand, within MIT1002_00681 at 744.844 kb on - strand, within MIT1002_00681 at 744.845 kb on - strand, within MIT1002_00681 at 744.851 kb on + strand, within MIT1002_00681 at 744.859 kb on - strand, within MIT1002_00681 at 744.888 kb on + strand, within MIT1002_00681 at 744.896 kb on - strand, within MIT1002_00681 at 744.941 kb on - strand, within MIT1002_00681 at 745.153 kb on - strand, within MIT1002_00681 at 745.153 kb on - strand, within MIT1002_00681 at 745.239 kb on - strand, within MIT1002_00681 at 745.275 kb on + strand, within MIT1002_00681 at 745.279 kb on - strand, within MIT1002_00681 at 745.444 kb on + strand, within MIT1002_00681 at 745.508 kb on + strand at 745.547 kb on - strand at 745.589 kb on + strand at 746.204 kb on - strand at 746.241 kb on - strand at 746.390 kb on - strand at 746.435 kb on + strand at 746.450 kb on + strand at 746.493 kb on + strand at 746.494 kb on - strand at 746.539 kb on + strand at 746.539 kb on + strand at 746.562 kb on - strand, within MIT1002_00683 at 746.564 kb on + strand, within MIT1002_00683 at 746.564 kb on + strand, within MIT1002_00683 at 746.572 kb on - strand, within MIT1002_00683 at 746.572 kb on - strand, within MIT1002_00683 at 746.606 kb on + strand, within MIT1002_00683 at 746.609 kb on - strand, within MIT1002_00683 at 746.696 kb on - strand, within MIT1002_00683 at 746.780 kb on - strand, within MIT1002_00683 at 746.866 kb on + strand, within MIT1002_00683 at 746.869 kb on - strand, within MIT1002_00683 at 746.874 kb on - strand, within MIT1002_00683 at 747.041 kb on - strand, within MIT1002_00683
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 4 remove 744,749 - MIT1002_00681 0.19 -1.1 744,754 + MIT1002_00681 0.19 -2.7 744,762 - MIT1002_00681 0.20 -2.8 744,836 + MIT1002_00681 0.27 -1.9 744,836 + MIT1002_00681 0.27 -1.7 744,844 - MIT1002_00681 0.28 +0.9 744,845 - MIT1002_00681 0.28 -0.1 744,851 + MIT1002_00681 0.29 +2.2 744,859 - MIT1002_00681 0.29 -1.1 744,888 + MIT1002_00681 0.32 -0.2 744,896 - MIT1002_00681 0.33 -1.4 744,941 - MIT1002_00681 0.37 +0.2 745,153 - MIT1002_00681 0.58 -3.4 745,153 - MIT1002_00681 0.58 -0.6 745,239 - MIT1002_00681 0.66 +2.2 745,275 + MIT1002_00681 0.70 +0.1 745,279 - MIT1002_00681 0.70 -1.7 745,444 + MIT1002_00681 0.86 -1.3 745,508 + -0.4 745,547 - -1.3 745,589 + -1.9 746,204 - -0.5 746,241 - +0.0 746,390 - +0.3 746,435 + +0.5 746,450 + -0.3 746,493 + +0.1 746,494 - -0.4 746,539 + +0.1 746,539 + -0.3 746,562 - MIT1002_00683 0.11 -0.9 746,564 + MIT1002_00683 0.11 -1.0 746,564 + MIT1002_00683 0.11 -0.4 746,572 - MIT1002_00683 0.12 +1.1 746,572 - MIT1002_00683 0.12 -0.4 746,606 + MIT1002_00683 0.15 -1.4 746,609 - MIT1002_00683 0.15 -0.7 746,696 - MIT1002_00683 0.23 -0.7 746,780 - MIT1002_00683 0.31 -0.4 746,866 + MIT1002_00683 0.39 -2.1 746,869 - MIT1002_00683 0.39 -1.9 746,874 - MIT1002_00683 0.40 -1.4 747,041 - MIT1002_00683 0.55 -2.2
Or see this region's nucleotide sequence