Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00675 and MIT1002_00676 are separated by 124 nucleotides MIT1002_00676 and MIT1002_00677 are separated by 212 nucleotides
MIT1002_00675: MIT1002_00675 - DNA topoisomerase 4 subunit B, at 738,569 to 740,464
_00675
MIT1002_00676: MIT1002_00676 - hypothetical protein, at 740,589 to 741,263
_00676
MIT1002_00677: MIT1002_00677 - Fructose-1-phosphate phosphatase YqaB, at 741,476 to 742,177
_00677
Position (kb) 740
741
742 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 740.529 kb on - strand at 740.550 kb on + strand at 740.654 kb on + strand at 740.728 kb on + strand, within MIT1002_00676 at 740.791 kb on - strand, within MIT1002_00676 at 740.816 kb on + strand, within MIT1002_00676 at 740.824 kb on + strand, within MIT1002_00676 at 740.824 kb on - strand, within MIT1002_00676 at 740.852 kb on + strand, within MIT1002_00676 at 740.852 kb on + strand, within MIT1002_00676 at 740.852 kb on + strand, within MIT1002_00676 at 740.860 kb on - strand, within MIT1002_00676 at 740.860 kb on - strand, within MIT1002_00676 at 740.860 kb on - strand, within MIT1002_00676 at 740.860 kb on - strand, within MIT1002_00676 at 740.884 kb on - strand, within MIT1002_00676 at 740.922 kb on + strand, within MIT1002_00676 at 741.003 kb on - strand, within MIT1002_00676 at 741.010 kb on + strand, within MIT1002_00676 at 741.026 kb on + strand, within MIT1002_00676 at 741.129 kb on + strand, within MIT1002_00676 at 741.130 kb on - strand, within MIT1002_00676 at 741.132 kb on + strand, within MIT1002_00676 at 741.134 kb on + strand, within MIT1002_00676 at 741.140 kb on - strand, within MIT1002_00676 at 741.174 kb on - strand, within MIT1002_00676 at 741.309 kb on + strand at 741.309 kb on + strand at 741.312 kb on - strand at 741.314 kb on + strand at 741.330 kb on + strand at 741.330 kb on + strand at 741.330 kb on + strand at 741.338 kb on - strand at 741.338 kb on - strand at 741.338 kb on - strand at 741.348 kb on - strand at 741.392 kb on + strand at 741.392 kb on + strand at 741.392 kb on + strand at 741.400 kb on - strand at 741.400 kb on - strand at 741.400 kb on - strand at 741.408 kb on - strand at 741.417 kb on + strand at 741.425 kb on - strand at 741.484 kb on + strand at 741.501 kb on - strand at 741.727 kb on + strand, within MIT1002_00677 at 741.818 kb on - strand, within MIT1002_00677 at 741.818 kb on - strand, within MIT1002_00677 at 741.840 kb on - strand, within MIT1002_00677 at 741.848 kb on - strand, within MIT1002_00677 at 741.916 kb on - strand, within MIT1002_00677 at 741.941 kb on + strand, within MIT1002_00677 at 741.949 kb on + strand, within MIT1002_00677 at 741.949 kb on + strand, within MIT1002_00677 at 741.957 kb on - strand, within MIT1002_00677 at 741.977 kb on - strand, within MIT1002_00677 at 741.977 kb on - strand, within MIT1002_00677 at 742.064 kb on + strand, within MIT1002_00677 at 742.064 kb on + strand, within MIT1002_00677 at 742.072 kb on - strand, within MIT1002_00677 at 742.072 kb on - strand, within MIT1002_00677 at 742.127 kb on + strand at 742.132 kb on + strand at 742.191 kb on + strand at 742.256 kb on - strand at 742.261 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 4 remove 740,529 - -1.7 740,550 + +0.4 740,654 + +1.1 740,728 + MIT1002_00676 0.21 -0.4 740,791 - MIT1002_00676 0.30 -2.1 740,816 + MIT1002_00676 0.34 +1.0 740,824 + MIT1002_00676 0.35 -0.7 740,824 - MIT1002_00676 0.35 +1.0 740,852 + MIT1002_00676 0.39 -0.0 740,852 + MIT1002_00676 0.39 -0.1 740,852 + MIT1002_00676 0.39 -0.9 740,860 - MIT1002_00676 0.40 +0.4 740,860 - MIT1002_00676 0.40 -0.1 740,860 - MIT1002_00676 0.40 +0.6 740,860 - MIT1002_00676 0.40 -1.0 740,884 - MIT1002_00676 0.44 -2.0 740,922 + MIT1002_00676 0.49 +0.2 741,003 - MIT1002_00676 0.61 -0.2 741,010 + MIT1002_00676 0.62 +0.3 741,026 + MIT1002_00676 0.65 +0.4 741,129 + MIT1002_00676 0.80 -0.1 741,130 - MIT1002_00676 0.80 -0.7 741,132 + MIT1002_00676 0.80 +1.6 741,134 + MIT1002_00676 0.81 +0.7 741,140 - MIT1002_00676 0.82 -0.4 741,174 - MIT1002_00676 0.87 -3.3 741,309 + -1.9 741,309 + -2.3 741,312 - -0.6 741,314 + +0.4 741,330 + +1.2 741,330 + +0.3 741,330 + +0.3 741,338 - +1.1 741,338 - +1.1 741,338 - -0.7 741,348 - -0.0 741,392 + +0.3 741,392 + -0.1 741,392 + +0.7 741,400 - +0.9 741,400 - -0.3 741,400 - -0.5 741,408 - +0.1 741,417 + +0.6 741,425 - +0.2 741,484 + +0.2 741,501 - -0.5 741,727 + MIT1002_00677 0.36 -0.9 741,818 - MIT1002_00677 0.49 +0.8 741,818 - MIT1002_00677 0.49 -1.4 741,840 - MIT1002_00677 0.52 -0.9 741,848 - MIT1002_00677 0.53 -1.1 741,916 - MIT1002_00677 0.63 +1.0 741,941 + MIT1002_00677 0.66 -0.4 741,949 + MIT1002_00677 0.67 +0.5 741,949 + MIT1002_00677 0.67 +1.0 741,957 - MIT1002_00677 0.69 +1.0 741,977 - MIT1002_00677 0.71 +0.1 741,977 - MIT1002_00677 0.71 +0.4 742,064 + MIT1002_00677 0.84 +0.9 742,064 + MIT1002_00677 0.84 -0.7 742,072 - MIT1002_00677 0.85 -0.1 742,072 - MIT1002_00677 0.85 +0.4 742,127 + -0.8 742,132 + -2.2 742,191 + -1.5 742,256 - +0.4 742,261 + -1.8
Or see this region's nucleotide sequence