Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00574

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00573 and MIT1002_00574 are separated by 81 nucleotidesMIT1002_00574 and MIT1002_00575 are separated by 18 nucleotides MIT1002_00573: MIT1002_00573 - Tyrosine recombinase XerD, at 616,416 to 617,369 _00573 MIT1002_00574: MIT1002_00574 - 3-ketoacyl-CoA thiolase, at 617,451 to 618,614 _00574 MIT1002_00575: MIT1002_00575 - Fatty acid oxidation complex subunit alpha, at 618,633 to 620,783 _00575 Position (kb) 617 618 619Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 616.461 kb on - strandat 616.564 kb on - strand, within MIT1002_00573at 616.566 kb on + strand, within MIT1002_00573at 616.574 kb on - strand, within MIT1002_00573at 616.599 kb on + strand, within MIT1002_00573at 616.607 kb on - strand, within MIT1002_00573at 616.662 kb on - strand, within MIT1002_00573at 616.703 kb on + strand, within MIT1002_00573at 616.752 kb on + strand, within MIT1002_00573at 616.792 kb on + strand, within MIT1002_00573at 616.816 kb on + strand, within MIT1002_00573at 617.046 kb on + strand, within MIT1002_00573at 617.107 kb on - strand, within MIT1002_00573at 617.202 kb on + strand, within MIT1002_00573at 617.249 kb on + strand, within MIT1002_00573at 617.257 kb on - strand, within MIT1002_00573at 617.268 kb on + strand, within MIT1002_00573at 617.276 kb on - strandat 617.285 kb on + strandat 617.328 kb on + strandat 617.333 kb on + strandat 617.333 kb on + strandat 617.344 kb on + strandat 617.472 kb on + strandat 617.480 kb on - strandat 617.492 kb on - strandat 617.524 kb on - strandat 617.539 kb on + strandat 617.580 kb on - strand, within MIT1002_00574at 617.616 kb on - strand, within MIT1002_00574at 617.620 kb on + strand, within MIT1002_00574at 617.644 kb on - strand, within MIT1002_00574at 617.649 kb on - strand, within MIT1002_00574at 617.667 kb on - strand, within MIT1002_00574at 617.689 kb on + strand, within MIT1002_00574at 617.705 kb on + strand, within MIT1002_00574at 617.773 kb on + strand, within MIT1002_00574at 617.828 kb on + strand, within MIT1002_00574at 617.834 kb on + strand, within MIT1002_00574at 617.836 kb on - strand, within MIT1002_00574at 617.884 kb on + strand, within MIT1002_00574at 617.884 kb on + strand, within MIT1002_00574at 617.884 kb on + strand, within MIT1002_00574at 617.892 kb on - strand, within MIT1002_00574at 617.892 kb on - strand, within MIT1002_00574at 617.892 kb on - strand, within MIT1002_00574at 617.892 kb on - strand, within MIT1002_00574at 617.902 kb on - strand, within MIT1002_00574at 617.932 kb on + strand, within MIT1002_00574at 617.934 kb on + strand, within MIT1002_00574at 617.934 kb on + strand, within MIT1002_00574at 617.942 kb on - strand, within MIT1002_00574at 617.989 kb on + strand, within MIT1002_00574at 618.033 kb on + strand, within MIT1002_00574at 618.044 kb on + strand, within MIT1002_00574at 618.074 kb on + strand, within MIT1002_00574at 618.075 kb on - strand, within MIT1002_00574at 618.118 kb on + strand, within MIT1002_00574at 618.131 kb on + strand, within MIT1002_00574at 618.166 kb on + strand, within MIT1002_00574at 618.166 kb on + strand, within MIT1002_00574at 618.174 kb on - strand, within MIT1002_00574at 618.201 kb on - strand, within MIT1002_00574at 618.206 kb on - strand, within MIT1002_00574at 618.250 kb on + strand, within MIT1002_00574at 618.257 kb on + strand, within MIT1002_00574at 618.343 kb on + strand, within MIT1002_00574at 618.365 kb on + strand, within MIT1002_00574at 618.373 kb on - strand, within MIT1002_00574at 618.422 kb on - strand, within MIT1002_00574at 618.437 kb on + strand, within MIT1002_00574at 618.437 kb on + strand, within MIT1002_00574at 618.437 kb on + strand, within MIT1002_00574at 618.445 kb on - strand, within MIT1002_00574at 618.447 kb on + strand, within MIT1002_00574at 618.450 kb on - strand, within MIT1002_00574at 618.487 kb on + strand, within MIT1002_00574at 618.487 kb on + strand, within MIT1002_00574at 618.489 kb on - strand, within MIT1002_00574at 618.508 kb on + strandat 618.510 kb on + strandat 618.531 kb on - strandat 618.531 kb on - strandat 618.570 kb on + strandat 618.570 kb on + strandat 618.570 kb on + strandat 618.570 kb on + strandat 618.578 kb on - strandat 618.578 kb on - strandat 618.578 kb on - strandat 618.580 kb on - strandat 618.580 kb on - strandat 618.580 kb on - strandat 618.791 kb on + strandat 618.791 kb on + strandat 618.799 kb on - strandat 618.818 kb on - strandat 618.848 kb on + strand, within MIT1002_00575at 618.848 kb on + strand, within MIT1002_00575at 618.885 kb on + strand, within MIT1002_00575at 618.904 kb on - strand, within MIT1002_00575at 618.908 kb on - strand, within MIT1002_00575at 618.973 kb on + strand, within MIT1002_00575at 618.973 kb on + strand, within MIT1002_00575at 618.981 kb on - strand, within MIT1002_00575at 618.995 kb on + strand, within MIT1002_00575at 619.003 kb on - strand, within MIT1002_00575at 619.018 kb on + strand, within MIT1002_00575at 619.037 kb on - strand, within MIT1002_00575at 619.037 kb on - strand, within MIT1002_00575at 619.051 kb on + strand, within MIT1002_00575at 619.054 kb on - strand, within MIT1002_00575at 619.059 kb on - strand, within MIT1002_00575at 619.061 kb on + strand, within MIT1002_00575at 619.069 kb on - strand, within MIT1002_00575at 619.077 kb on + strand, within MIT1002_00575at 619.118 kb on + strand, within MIT1002_00575at 619.300 kb on - strand, within MIT1002_00575at 619.313 kb on + strand, within MIT1002_00575at 619.339 kb on - strand, within MIT1002_00575at 619.367 kb on + strand, within MIT1002_00575at 619.423 kb on - strand, within MIT1002_00575at 619.423 kb on - strand, within MIT1002_00575at 619.431 kb on + strand, within MIT1002_00575at 619.446 kb on - strand, within MIT1002_00575at 619.453 kb on + strand, within MIT1002_00575at 619.457 kb on + strand, within MIT1002_00575at 619.457 kb on + strand, within MIT1002_00575at 619.528 kb on + strand, within MIT1002_00575at 619.541 kb on - strand, within MIT1002_00575at 619.550 kb on + strand, within MIT1002_00575at 619.557 kb on + strand, within MIT1002_00575

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 4
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616,461 - -0.6
616,564 - MIT1002_00573 0.16 +0.7
616,566 + MIT1002_00573 0.16 +0.7
616,574 - MIT1002_00573 0.17 -1.9
616,599 + MIT1002_00573 0.19 +0.5
616,607 - MIT1002_00573 0.20 +1.0
616,662 - MIT1002_00573 0.26 -2.2
616,703 + MIT1002_00573 0.30 -0.3
616,752 + MIT1002_00573 0.35 +0.6
616,792 + MIT1002_00573 0.39 -0.1
616,816 + MIT1002_00573 0.42 -0.4
617,046 + MIT1002_00573 0.66 -0.8
617,107 - MIT1002_00573 0.72 -0.2
617,202 + MIT1002_00573 0.82 -0.3
617,249 + MIT1002_00573 0.87 +0.1
617,257 - MIT1002_00573 0.88 -0.1
617,268 + MIT1002_00573 0.89 -0.4
617,276 - +1.4
617,285 + -0.3
617,328 + -0.4
617,333 + +0.5
617,333 + -2.4
617,344 + +0.9
617,472 + -1.6
617,480 - +1.6
617,492 - -0.8
617,524 - -0.7
617,539 + +1.4
617,580 - MIT1002_00574 0.11 -0.6
617,616 - MIT1002_00574 0.14 +0.5
617,620 + MIT1002_00574 0.15 -2.0
617,644 - MIT1002_00574 0.17 +0.0
617,649 - MIT1002_00574 0.17 -0.3
617,667 - MIT1002_00574 0.19 +0.2
617,689 + MIT1002_00574 0.20 -1.4
617,705 + MIT1002_00574 0.22 +0.8
617,773 + MIT1002_00574 0.28 -0.5
617,828 + MIT1002_00574 0.32 +0.0
617,834 + MIT1002_00574 0.33 -2.1
617,836 - MIT1002_00574 0.33 +2.7
617,884 + MIT1002_00574 0.37 +0.1
617,884 + MIT1002_00574 0.37 -0.4
617,884 + MIT1002_00574 0.37 -1.1
617,892 - MIT1002_00574 0.38 -0.7
617,892 - MIT1002_00574 0.38 +0.2
617,892 - MIT1002_00574 0.38 +0.8
617,892 - MIT1002_00574 0.38 -1.1
617,902 - MIT1002_00574 0.39 -1.1
617,932 + MIT1002_00574 0.41 +0.0
617,934 + MIT1002_00574 0.41 -1.4
617,934 + MIT1002_00574 0.41 +1.6
617,942 - MIT1002_00574 0.42 -0.4
617,989 + MIT1002_00574 0.46 -0.1
618,033 + MIT1002_00574 0.50 +1.1
618,044 + MIT1002_00574 0.51 -0.1
618,074 + MIT1002_00574 0.54 -0.3
618,075 - MIT1002_00574 0.54 -0.4
618,118 + MIT1002_00574 0.57 +0.4
618,131 + MIT1002_00574 0.58 -1.0
618,166 + MIT1002_00574 0.61 -0.5
618,166 + MIT1002_00574 0.61 -0.4
618,174 - MIT1002_00574 0.62 +0.2
618,201 - MIT1002_00574 0.64 -0.4
618,206 - MIT1002_00574 0.65 -2.1
618,250 + MIT1002_00574 0.69 +0.1
618,257 + MIT1002_00574 0.69 +0.9
618,343 + MIT1002_00574 0.77 -1.6
618,365 + MIT1002_00574 0.79 +0.2
618,373 - MIT1002_00574 0.79 +0.6
618,422 - MIT1002_00574 0.83 -0.3
618,437 + MIT1002_00574 0.85 +0.6
618,437 + MIT1002_00574 0.85 +0.3
618,437 + MIT1002_00574 0.85 -0.3
618,445 - MIT1002_00574 0.85 -0.7
618,447 + MIT1002_00574 0.86 -0.4
618,450 - MIT1002_00574 0.86 -1.5
618,487 + MIT1002_00574 0.89 +0.9
618,487 + MIT1002_00574 0.89 +0.2
618,489 - MIT1002_00574 0.89 +1.1
618,508 + +0.5
618,510 + +0.3
618,531 - +2.1
618,531 - -1.8
618,570 + -0.1
618,570 + -1.7
618,570 + +0.8
618,570 + +1.3
618,578 - +0.6
618,578 - -0.1
618,578 - +1.3
618,580 - +0.3
618,580 - -1.9
618,580 - +0.2
618,791 + +0.3
618,791 + +1.3
618,799 - +2.3
618,818 - -0.1
618,848 + MIT1002_00575 0.10 +1.9
618,848 + MIT1002_00575 0.10 +0.4
618,885 + MIT1002_00575 0.12 +0.1
618,904 - MIT1002_00575 0.13 +0.8
618,908 - MIT1002_00575 0.13 +0.9
618,973 + MIT1002_00575 0.16 -0.4
618,973 + MIT1002_00575 0.16 +1.4
618,981 - MIT1002_00575 0.16 +1.9
618,995 + MIT1002_00575 0.17 -1.4
619,003 - MIT1002_00575 0.17 +1.1
619,018 + MIT1002_00575 0.18 +0.7
619,037 - MIT1002_00575 0.19 +0.5
619,037 - MIT1002_00575 0.19 -0.1
619,051 + MIT1002_00575 0.19 +0.3
619,054 - MIT1002_00575 0.20 +0.1
619,059 - MIT1002_00575 0.20 +0.1
619,061 + MIT1002_00575 0.20 -0.2
619,069 - MIT1002_00575 0.20 +0.8
619,077 + MIT1002_00575 0.21 -1.7
619,118 + MIT1002_00575 0.23 -0.7
619,300 - MIT1002_00575 0.31 -0.2
619,313 + MIT1002_00575 0.32 -1.1
619,339 - MIT1002_00575 0.33 +1.1
619,367 + MIT1002_00575 0.34 -3.0
619,423 - MIT1002_00575 0.37 -1.2
619,423 - MIT1002_00575 0.37 +1.5
619,431 + MIT1002_00575 0.37 -2.6
619,446 - MIT1002_00575 0.38 +0.5
619,453 + MIT1002_00575 0.38 -1.1
619,457 + MIT1002_00575 0.38 -4.1
619,457 + MIT1002_00575 0.38 -0.2
619,528 + MIT1002_00575 0.42 -1.5
619,541 - MIT1002_00575 0.42 +1.1
619,550 + MIT1002_00575 0.43 +0.8
619,557 + MIT1002_00575 0.43 -1.6

Or see this region's nucleotide sequence