Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00531 and MIT1002_00532 are separated by 56 nucleotides MIT1002_00532 and MIT1002_00533 are separated by 503 nucleotides
MIT1002_00531: MIT1002_00531 - cysteine desulfurase, SufS family, at 577,621 to 578,799
_00531
MIT1002_00532: MIT1002_00532 - hypothetical protein, at 578,856 to 579,038
_00532
MIT1002_00533: MIT1002_00533 - Adenylosuccinate synthetase, at 579,542 to 580,840
_00533
Position (kb) 578
579
580 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 577.910 kb on + strand, within MIT1002_00531 at 577.928 kb on - strand, within MIT1002_00531 at 578.162 kb on + strand, within MIT1002_00531 at 578.189 kb on + strand, within MIT1002_00531 at 578.195 kb on + strand, within MIT1002_00531 at 578.215 kb on + strand, within MIT1002_00531 at 578.286 kb on - strand, within MIT1002_00531 at 578.299 kb on - strand, within MIT1002_00531 at 578.305 kb on + strand, within MIT1002_00531 at 578.305 kb on + strand, within MIT1002_00531 at 578.305 kb on + strand, within MIT1002_00531 at 578.313 kb on - strand, within MIT1002_00531 at 578.313 kb on - strand, within MIT1002_00531 at 578.313 kb on - strand, within MIT1002_00531 at 578.313 kb on - strand, within MIT1002_00531 at 578.313 kb on - strand, within MIT1002_00531 at 578.327 kb on - strand, within MIT1002_00531 at 578.342 kb on + strand, within MIT1002_00531 at 578.342 kb on + strand, within MIT1002_00531 at 578.350 kb on - strand, within MIT1002_00531 at 578.386 kb on + strand, within MIT1002_00531 at 578.465 kb on - strand, within MIT1002_00531 at 578.541 kb on - strand, within MIT1002_00531 at 578.644 kb on + strand, within MIT1002_00531 at 578.692 kb on - strand at 578.696 kb on + strand at 578.696 kb on + strand at 578.704 kb on - strand at 578.704 kb on - strand at 578.738 kb on + strand at 578.751 kb on + strand at 578.751 kb on - strand at 578.756 kb on + strand at 578.756 kb on + strand at 578.756 kb on + strand at 578.756 kb on + strand at 578.756 kb on - strand at 578.764 kb on - strand at 578.764 kb on - strand at 578.794 kb on + strand at 578.837 kb on - strand at 578.861 kb on + strand at 578.874 kb on + strand at 578.910 kb on - strand, within MIT1002_00532 at 578.968 kb on + strand, within MIT1002_00532 at 578.968 kb on + strand, within MIT1002_00532 at 578.976 kb on - strand, within MIT1002_00532 at 579.010 kb on + strand, within MIT1002_00532 at 579.058 kb on - strand at 579.092 kb on + strand at 579.102 kb on - strand at 579.104 kb on + strand at 579.112 kb on - strand at 579.125 kb on - strand at 579.154 kb on - strand at 579.212 kb on + strand at 579.239 kb on - strand at 579.291 kb on + strand at 579.295 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 4 remove 577,910 + MIT1002_00531 0.25 -1.6 577,928 - MIT1002_00531 0.26 +0.1 578,162 + MIT1002_00531 0.46 +0.1 578,189 + MIT1002_00531 0.48 -1.1 578,195 + MIT1002_00531 0.49 +0.1 578,215 + MIT1002_00531 0.50 +1.4 578,286 - MIT1002_00531 0.56 +0.6 578,299 - MIT1002_00531 0.58 -0.9 578,305 + MIT1002_00531 0.58 -2.5 578,305 + MIT1002_00531 0.58 +0.7 578,305 + MIT1002_00531 0.58 +0.3 578,313 - MIT1002_00531 0.59 -1.1 578,313 - MIT1002_00531 0.59 -2.0 578,313 - MIT1002_00531 0.59 -0.0 578,313 - MIT1002_00531 0.59 -2.9 578,313 - MIT1002_00531 0.59 -0.1 578,327 - MIT1002_00531 0.60 +0.3 578,342 + MIT1002_00531 0.61 -0.7 578,342 + MIT1002_00531 0.61 -1.8 578,350 - MIT1002_00531 0.62 -0.8 578,386 + MIT1002_00531 0.65 -0.7 578,465 - MIT1002_00531 0.72 +1.5 578,541 - MIT1002_00531 0.78 +0.2 578,644 + MIT1002_00531 0.87 +0.5 578,692 - +1.7 578,696 + +1.2 578,696 + -0.2 578,704 - +0.6 578,704 - -0.1 578,738 + -0.7 578,751 + +1.3 578,751 - +0.5 578,756 + -1.2 578,756 + -1.7 578,756 + +0.4 578,756 + -0.2 578,756 - -0.8 578,764 - -0.1 578,764 - +1.4 578,794 + -0.3 578,837 - +0.0 578,861 + -1.6 578,874 + -0.7 578,910 - MIT1002_00532 0.30 +0.6 578,968 + MIT1002_00532 0.61 +0.8 578,968 + MIT1002_00532 0.61 +0.3 578,976 - MIT1002_00532 0.66 +0.1 579,010 + MIT1002_00532 0.84 -0.3 579,058 - -2.4 579,092 + +1.3 579,102 - +0.1 579,104 + +0.3 579,112 - +0.5 579,125 - -0.0 579,154 - +0.9 579,212 + +0.8 579,239 - +0.5 579,291 + -0.1 579,295 + +0.7
Or see this region's nucleotide sequence