Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00483

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00482 and MIT1002_00483 are separated by 4 nucleotidesMIT1002_00483 and MIT1002_00484 are separated by 159 nucleotidesMIT1002_00484 and MIT1002_00485 are separated by 90 nucleotides MIT1002_00482: MIT1002_00482 - Macrolide export ATP-binding/permease protein MacB, at 526,430 to 528,400 _00482 MIT1002_00483: MIT1002_00483 - Outer membrane protein OprM precursor, at 528,405 to 529,814 _00483 MIT1002_00484: MIT1002_00484 - hypothetical protein, at 529,974 to 530,366 _00484 MIT1002_00485: MIT1002_00485 - Glycerol-3-phosphate dehydrogenase [NAD(P)+], at 530,457 to 531,488 _00485 Position (kb) 528 529 530Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 527.427 kb on + strand, within MIT1002_00482at 527.478 kb on - strand, within MIT1002_00482at 527.485 kb on + strand, within MIT1002_00482at 527.499 kb on - strand, within MIT1002_00482at 527.499 kb on - strand, within MIT1002_00482at 527.514 kb on + strand, within MIT1002_00482at 527.638 kb on - strand, within MIT1002_00482at 527.760 kb on - strand, within MIT1002_00482at 527.789 kb on - strand, within MIT1002_00482at 527.824 kb on + strand, within MIT1002_00482at 527.832 kb on - strand, within MIT1002_00482at 527.884 kb on + strand, within MIT1002_00482at 527.892 kb on + strand, within MIT1002_00482at 527.987 kb on + strand, within MIT1002_00482at 528.008 kb on + strand, within MIT1002_00482at 528.169 kb on - strand, within MIT1002_00482at 528.192 kb on - strand, within MIT1002_00482at 528.202 kb on - strand, within MIT1002_00482at 528.209 kb on + strandat 528.254 kb on + strandat 528.282 kb on + strandat 528.359 kb on + strandat 528.375 kb on - strandat 528.383 kb on - strandat 528.394 kb on + strandat 528.395 kb on + strandat 528.395 kb on + strandat 528.442 kb on + strandat 528.452 kb on - strandat 528.466 kb on + strandat 528.469 kb on - strandat 528.469 kb on - strandat 528.469 kb on - strandat 528.474 kb on - strandat 528.601 kb on - strand, within MIT1002_00483at 528.660 kb on + strand, within MIT1002_00483at 528.668 kb on - strand, within MIT1002_00483at 528.679 kb on - strand, within MIT1002_00483at 528.692 kb on - strand, within MIT1002_00483at 528.739 kb on + strand, within MIT1002_00483at 528.739 kb on + strand, within MIT1002_00483at 528.739 kb on + strand, within MIT1002_00483at 528.747 kb on - strand, within MIT1002_00483at 528.747 kb on - strand, within MIT1002_00483at 528.747 kb on - strand, within MIT1002_00483at 528.747 kb on - strand, within MIT1002_00483at 528.747 kb on - strand, within MIT1002_00483at 528.749 kb on + strand, within MIT1002_00483at 528.749 kb on + strand, within MIT1002_00483at 528.759 kb on + strand, within MIT1002_00483at 528.767 kb on - strand, within MIT1002_00483at 528.767 kb on - strand, within MIT1002_00483at 528.789 kb on + strand, within MIT1002_00483at 528.811 kb on + strand, within MIT1002_00483at 528.819 kb on - strand, within MIT1002_00483at 528.822 kb on + strand, within MIT1002_00483at 528.824 kb on + strand, within MIT1002_00483at 528.830 kb on - strand, within MIT1002_00483at 528.832 kb on - strand, within MIT1002_00483at 528.859 kb on - strand, within MIT1002_00483at 528.874 kb on + strand, within MIT1002_00483at 528.882 kb on - strand, within MIT1002_00483at 528.905 kb on + strand, within MIT1002_00483at 528.913 kb on + strand, within MIT1002_00483at 528.955 kb on - strand, within MIT1002_00483at 528.976 kb on - strand, within MIT1002_00483at 528.987 kb on + strand, within MIT1002_00483at 528.988 kb on - strand, within MIT1002_00483at 529.000 kb on - strand, within MIT1002_00483at 529.051 kb on + strand, within MIT1002_00483at 529.077 kb on + strand, within MIT1002_00483at 529.095 kb on - strand, within MIT1002_00483at 529.101 kb on - strand, within MIT1002_00483at 529.120 kb on + strand, within MIT1002_00483at 529.126 kb on + strand, within MIT1002_00483at 529.159 kb on - strand, within MIT1002_00483at 529.183 kb on + strand, within MIT1002_00483at 529.240 kb on - strand, within MIT1002_00483at 529.253 kb on - strand, within MIT1002_00483at 529.256 kb on - strand, within MIT1002_00483at 529.282 kb on - strand, within MIT1002_00483at 529.289 kb on + strand, within MIT1002_00483at 529.409 kb on + strand, within MIT1002_00483at 529.416 kb on + strand, within MIT1002_00483at 529.417 kb on + strand, within MIT1002_00483at 529.419 kb on - strand, within MIT1002_00483at 529.449 kb on - strand, within MIT1002_00483at 529.466 kb on + strand, within MIT1002_00483at 529.466 kb on + strand, within MIT1002_00483at 529.466 kb on + strand, within MIT1002_00483at 529.473 kb on - strand, within MIT1002_00483at 529.484 kb on - strand, within MIT1002_00483at 529.527 kb on - strand, within MIT1002_00483at 529.604 kb on + strand, within MIT1002_00483at 529.634 kb on + strand, within MIT1002_00483at 529.642 kb on + strand, within MIT1002_00483at 529.706 kb on - strandat 529.750 kb on - strandat 529.752 kb on + strandat 529.780 kb on + strandat 529.792 kb on - strandat 529.794 kb on + strandat 529.848 kb on + strandat 529.887 kb on + strandat 529.890 kb on - strandat 529.895 kb on - strandat 529.902 kb on + strandat 529.927 kb on + strandat 529.935 kb on - strandat 529.969 kb on + strandat 530.135 kb on - strand, within MIT1002_00484at 530.172 kb on + strand, within MIT1002_00484at 530.182 kb on + strand, within MIT1002_00484at 530.182 kb on + strand, within MIT1002_00484at 530.182 kb on + strand, within MIT1002_00484at 530.182 kb on + strand, within MIT1002_00484at 530.182 kb on + strand, within MIT1002_00484at 530.182 kb on + strand, within MIT1002_00484at 530.182 kb on + strand, within MIT1002_00484at 530.182 kb on + strand, within MIT1002_00484at 530.182 kb on + strand, within MIT1002_00484at 530.182 kb on + strand, within MIT1002_00484at 530.182 kb on + strand, within MIT1002_00484at 530.182 kb on + strand, within MIT1002_00484at 530.190 kb on - strand, within MIT1002_00484at 530.190 kb on - strand, within MIT1002_00484at 530.190 kb on - strand, within MIT1002_00484at 530.190 kb on - strand, within MIT1002_00484at 530.190 kb on - strand, within MIT1002_00484at 530.190 kb on - strand, within MIT1002_00484at 530.190 kb on - strand, within MIT1002_00484at 530.190 kb on - strand, within MIT1002_00484at 530.190 kb on - strand, within MIT1002_00484at 530.190 kb on - strand, within MIT1002_00484at 530.190 kb on - strand, within MIT1002_00484at 530.190 kb on - strand, within MIT1002_00484at 530.190 kb on - strand, within MIT1002_00484at 530.190 kb on - strand, within MIT1002_00484at 530.190 kb on - strand, within MIT1002_00484at 530.190 kb on - strand, within MIT1002_00484at 530.190 kb on - strand, within MIT1002_00484at 530.225 kb on - strand, within MIT1002_00484at 530.249 kb on - strand, within MIT1002_00484at 530.264 kb on + strand, within MIT1002_00484at 530.308 kb on - strand, within MIT1002_00484at 530.332 kb on + strandat 530.332 kb on + strandat 530.375 kb on - strandat 530.450 kb on + strandat 530.460 kb on - strandat 530.467 kb on + strandat 530.523 kb on + strandat 530.531 kb on - strandat 530.541 kb on - strandat 530.541 kb on - strandat 530.613 kb on - strand, within MIT1002_00485at 530.623 kb on + strand, within MIT1002_00485at 530.785 kb on + strand, within MIT1002_00485at 530.795 kb on - strand, within MIT1002_00485

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 4
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527,427 + MIT1002_00482 0.51 +0.4
527,478 - MIT1002_00482 0.53 +0.2
527,485 + MIT1002_00482 0.54 -1.2
527,499 - MIT1002_00482 0.54 +2.0
527,499 - MIT1002_00482 0.54 +0.2
527,514 + MIT1002_00482 0.55 -0.4
527,638 - MIT1002_00482 0.61 -2.3
527,760 - MIT1002_00482 0.67 -0.7
527,789 - MIT1002_00482 0.69 +0.9
527,824 + MIT1002_00482 0.71 -3.9
527,832 - MIT1002_00482 0.71 +0.5
527,884 + MIT1002_00482 0.74 +1.0
527,892 + MIT1002_00482 0.74 -2.2
527,987 + MIT1002_00482 0.79 +0.4
528,008 + MIT1002_00482 0.80 +0.5
528,169 - MIT1002_00482 0.88 -0.1
528,192 - MIT1002_00482 0.89 -0.6
528,202 - MIT1002_00482 0.90 -0.7
528,209 + +1.5
528,254 + +0.8
528,282 + +0.7
528,359 + +0.6
528,375 - -2.1
528,383 - -1.3
528,394 + -1.1
528,395 + +0.5
528,395 + -0.5
528,442 + -0.1
528,452 - -1.8
528,466 + -1.3
528,469 - -1.1
528,469 - -0.6
528,469 - +1.7
528,474 - +1.3
528,601 - MIT1002_00483 0.14 -0.1
528,660 + MIT1002_00483 0.18 -1.3
528,668 - MIT1002_00483 0.19 +0.3
528,679 - MIT1002_00483 0.19 +0.1
528,692 - MIT1002_00483 0.20 +0.6
528,739 + MIT1002_00483 0.24 -1.4
528,739 + MIT1002_00483 0.24 -2.9
528,739 + MIT1002_00483 0.24 -1.1
528,747 - MIT1002_00483 0.24 -1.2
528,747 - MIT1002_00483 0.24 +0.5
528,747 - MIT1002_00483 0.24 +0.0
528,747 - MIT1002_00483 0.24 -1.7
528,747 - MIT1002_00483 0.24 -0.4
528,749 + MIT1002_00483 0.24 -0.3
528,749 + MIT1002_00483 0.24 -1.3
528,759 + MIT1002_00483 0.25 -2.9
528,767 - MIT1002_00483 0.26 -2.4
528,767 - MIT1002_00483 0.26 -1.7
528,789 + MIT1002_00483 0.27 +1.7
528,811 + MIT1002_00483 0.29 -0.7
528,819 - MIT1002_00483 0.29 -0.2
528,822 + MIT1002_00483 0.30 -0.8
528,824 + MIT1002_00483 0.30 -0.0
528,830 - MIT1002_00483 0.30 -0.7
528,832 - MIT1002_00483 0.30 -0.6
528,859 - MIT1002_00483 0.32 +0.1
528,874 + MIT1002_00483 0.33 -2.2
528,882 - MIT1002_00483 0.34 +1.7
528,905 + MIT1002_00483 0.35 -2.1
528,913 + MIT1002_00483 0.36 -0.6
528,955 - MIT1002_00483 0.39 -1.4
528,976 - MIT1002_00483 0.40 -1.8
528,987 + MIT1002_00483 0.41 +0.1
528,988 - MIT1002_00483 0.41 +1.1
529,000 - MIT1002_00483 0.42 -0.9
529,051 + MIT1002_00483 0.46 -1.4
529,077 + MIT1002_00483 0.48 +1.5
529,095 - MIT1002_00483 0.49 +1.1
529,101 - MIT1002_00483 0.49 -1.7
529,120 + MIT1002_00483 0.51 +0.7
529,126 + MIT1002_00483 0.51 +0.2
529,159 - MIT1002_00483 0.53 +0.1
529,183 + MIT1002_00483 0.55 +1.4
529,240 - MIT1002_00483 0.59 +0.1
529,253 - MIT1002_00483 0.60 +0.2
529,256 - MIT1002_00483 0.60 -0.5
529,282 - MIT1002_00483 0.62 -0.0
529,289 + MIT1002_00483 0.63 -0.5
529,409 + MIT1002_00483 0.71 -0.3
529,416 + MIT1002_00483 0.72 +0.6
529,417 + MIT1002_00483 0.72 -2.0
529,419 - MIT1002_00483 0.72 +0.3
529,449 - MIT1002_00483 0.74 -0.3
529,466 + MIT1002_00483 0.75 +2.9
529,466 + MIT1002_00483 0.75 +0.9
529,466 + MIT1002_00483 0.75 +1.0
529,473 - MIT1002_00483 0.76 +0.5
529,484 - MIT1002_00483 0.77 -1.1
529,527 - MIT1002_00483 0.80 +0.3
529,604 + MIT1002_00483 0.85 +0.7
529,634 + MIT1002_00483 0.87 +2.7
529,642 + MIT1002_00483 0.88 +0.1
529,706 - -1.6
529,750 - -0.6
529,752 + +0.2
529,780 + -0.3
529,792 - -3.9
529,794 + -1.6
529,848 + +1.7
529,887 + -0.6
529,890 - +2.1
529,895 - -0.4
529,902 + +1.5
529,927 + -0.2
529,935 - +0.0
529,969 + +0.6
530,135 - MIT1002_00484 0.41 +0.9
530,172 + MIT1002_00484 0.50 -1.1
530,182 + MIT1002_00484 0.53 -0.1
530,182 + MIT1002_00484 0.53 +0.4
530,182 + MIT1002_00484 0.53 -0.6
530,182 + MIT1002_00484 0.53 -0.4
530,182 + MIT1002_00484 0.53 +1.9
530,182 + MIT1002_00484 0.53 +0.2
530,182 + MIT1002_00484 0.53 +1.0
530,182 + MIT1002_00484 0.53 -0.8
530,182 + MIT1002_00484 0.53 +0.1
530,182 + MIT1002_00484 0.53 +0.2
530,182 + MIT1002_00484 0.53 -0.9
530,182 + MIT1002_00484 0.53 +1.4
530,190 - MIT1002_00484 0.55 -0.1
530,190 - MIT1002_00484 0.55 +0.4
530,190 - MIT1002_00484 0.55 +1.9
530,190 - MIT1002_00484 0.55 +0.5
530,190 - MIT1002_00484 0.55 -0.4
530,190 - MIT1002_00484 0.55 +2.2
530,190 - MIT1002_00484 0.55 -1.0
530,190 - MIT1002_00484 0.55 +0.5
530,190 - MIT1002_00484 0.55 -2.2
530,190 - MIT1002_00484 0.55 -2.8
530,190 - MIT1002_00484 0.55 -1.1
530,190 - MIT1002_00484 0.55 -0.9
530,190 - MIT1002_00484 0.55 +2.7
530,190 - MIT1002_00484 0.55 -0.3
530,190 - MIT1002_00484 0.55 -0.2
530,190 - MIT1002_00484 0.55 -1.6
530,190 - MIT1002_00484 0.55 -2.2
530,225 - MIT1002_00484 0.64 -0.3
530,249 - MIT1002_00484 0.70 +0.6
530,264 + MIT1002_00484 0.74 +0.5
530,308 - MIT1002_00484 0.85 +1.0
530,332 + +3.2
530,332 + +1.1
530,375 - +0.1
530,450 + +0.6
530,460 - -1.7
530,467 + -5.2
530,523 + -3.4
530,531 - -3.1
530,541 - -2.7
530,541 - -1.3
530,613 - MIT1002_00485 0.15 -0.1
530,623 + MIT1002_00485 0.16 -3.6
530,785 + MIT1002_00485 0.32 -2.2
530,795 - MIT1002_00485 0.33 -4.3

Or see this region's nucleotide sequence