Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00446 and MIT1002_00447 are separated by 121 nucleotides MIT1002_00447 and MIT1002_00448 are separated by 30 nucleotides MIT1002_00448 and MIT1002_00449 are separated by 270 nucleotides
MIT1002_00446: MIT1002_00446 - hypothetical protein, at 486,851 to 488,323
_00446
MIT1002_00447: MIT1002_00447 - 3-dehydroquinate synthase, at 488,445 to 489,512
_00447
MIT1002_00448: MIT1002_00448 - Shikimate kinase 1, at 489,543 to 490,058
_00448
MIT1002_00449: MIT1002_00449 - Type IV pilus biogenesis and competence protein PilQ precursor, at 490,329 to 492,101
_00449
Position (kb) 488
489
490 Strain fitness (log2 ratio) -2
-1
0
1
2 at 487.456 kb on + strand, within MIT1002_00446 at 487.456 kb on + strand, within MIT1002_00446 at 487.464 kb on - strand, within MIT1002_00446 at 487.504 kb on - strand, within MIT1002_00446 at 487.504 kb on - strand, within MIT1002_00446 at 487.555 kb on - strand, within MIT1002_00446 at 487.565 kb on - strand, within MIT1002_00446 at 487.575 kb on - strand, within MIT1002_00446 at 487.635 kb on + strand, within MIT1002_00446 at 487.815 kb on + strand, within MIT1002_00446 at 487.815 kb on + strand, within MIT1002_00446 at 487.823 kb on - strand, within MIT1002_00446 at 487.823 kb on - strand, within MIT1002_00446 at 487.891 kb on + strand, within MIT1002_00446 at 487.905 kb on + strand, within MIT1002_00446 at 487.987 kb on - strand, within MIT1002_00446 at 487.987 kb on - strand, within MIT1002_00446 at 487.987 kb on - strand, within MIT1002_00446 at 488.020 kb on - strand, within MIT1002_00446 at 488.032 kb on - strand, within MIT1002_00446 at 488.151 kb on - strand, within MIT1002_00446 at 488.228 kb on + strand at 488.236 kb on - strand at 488.348 kb on + strand at 490.160 kb on - strand at 490.168 kb on - strand at 490.240 kb on + strand at 490.240 kb on + strand at 490.248 kb on - strand at 490.356 kb on - strand at 490.373 kb on - strand at 490.393 kb on + strand at 490.479 kb on + strand at 490.493 kb on + strand at 490.496 kb on - strand at 490.501 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 4 remove 487,456 + MIT1002_00446 0.41 -2.7 487,456 + MIT1002_00446 0.41 +0.2 487,464 - MIT1002_00446 0.42 -0.2 487,504 - MIT1002_00446 0.44 +0.3 487,504 - MIT1002_00446 0.44 -0.3 487,555 - MIT1002_00446 0.48 +0.6 487,565 - MIT1002_00446 0.48 +0.6 487,575 - MIT1002_00446 0.49 -0.3 487,635 + MIT1002_00446 0.53 +0.5 487,815 + MIT1002_00446 0.65 +0.1 487,815 + MIT1002_00446 0.65 -2.0 487,823 - MIT1002_00446 0.66 -0.6 487,823 - MIT1002_00446 0.66 +0.9 487,891 + MIT1002_00446 0.71 -0.1 487,905 + MIT1002_00446 0.72 +0.4 487,987 - MIT1002_00446 0.77 -0.8 487,987 - MIT1002_00446 0.77 -2.5 487,987 - MIT1002_00446 0.77 +1.1 488,020 - MIT1002_00446 0.79 -0.9 488,032 - MIT1002_00446 0.80 -2.0 488,151 - MIT1002_00446 0.88 -0.4 488,228 + +0.4 488,236 - +0.3 488,348 + -2.6 490,160 - +2.4 490,168 - +0.8 490,240 + -2.4 490,240 + -1.3 490,248 - -1.1 490,356 - +0.1 490,373 - +1.9 490,393 + -1.5 490,479 + +0.8 490,493 + +0.7 490,496 - -0.3 490,501 - -0.8
Or see this region's nucleotide sequence