Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00404 and MIT1002_00405 are separated by 185 nucleotides MIT1002_00405 and MIT1002_00406 are separated by 210 nucleotides
MIT1002_00404: MIT1002_00404 - Formyltetrahydrofolate deformylase, at 433,756 to 434,610
_00404
MIT1002_00405: MIT1002_00405 - 2'-5'-RNA ligase, at 434,796 to 435,449
_00405
MIT1002_00406: MIT1002_00406 - ATP-dependent RNA helicase HrpB, at 435,660 to 438,302
_00406
Position (kb) 434
435
436 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 433.808 kb on - strand at 433.815 kb on - strand at 433.863 kb on + strand, within MIT1002_00404 at 433.877 kb on + strand, within MIT1002_00404 at 433.885 kb on - strand, within MIT1002_00404 at 433.896 kb on + strand, within MIT1002_00404 at 433.904 kb on - strand, within MIT1002_00404 at 433.909 kb on - strand, within MIT1002_00404 at 433.913 kb on + strand, within MIT1002_00404 at 433.968 kb on + strand, within MIT1002_00404 at 433.981 kb on + strand, within MIT1002_00404 at 434.001 kb on + strand, within MIT1002_00404 at 434.008 kb on - strand, within MIT1002_00404 at 434.047 kb on + strand, within MIT1002_00404 at 434.177 kb on + strand, within MIT1002_00404 at 434.213 kb on - strand, within MIT1002_00404 at 434.259 kb on + strand, within MIT1002_00404 at 434.264 kb on + strand, within MIT1002_00404 at 434.274 kb on + strand, within MIT1002_00404 at 434.279 kb on - strand, within MIT1002_00404 at 434.301 kb on + strand, within MIT1002_00404 at 434.340 kb on - strand, within MIT1002_00404 at 434.378 kb on - strand, within MIT1002_00404 at 434.378 kb on - strand, within MIT1002_00404 at 434.422 kb on + strand, within MIT1002_00404 at 434.430 kb on - strand, within MIT1002_00404 at 434.571 kb on + strand at 434.581 kb on + strand at 434.581 kb on + strand at 434.589 kb on - strand at 434.641 kb on + strand at 434.641 kb on + strand at 434.664 kb on + strand at 434.690 kb on - strand at 434.690 kb on - strand at 434.691 kb on - strand at 434.691 kb on - strand at 434.719 kb on + strand at 434.725 kb on + strand at 434.733 kb on - strand at 434.771 kb on + strand at 434.781 kb on + strand at 434.789 kb on - strand at 434.822 kb on + strand at 434.836 kb on - strand at 434.854 kb on + strand at 434.854 kb on + strand at 434.862 kb on - strand, within MIT1002_00405 at 434.872 kb on + strand, within MIT1002_00405 at 434.872 kb on + strand, within MIT1002_00405 at 434.872 kb on + strand, within MIT1002_00405 at 434.872 kb on + strand, within MIT1002_00405 at 434.880 kb on - strand, within MIT1002_00405 at 434.884 kb on - strand, within MIT1002_00405 at 434.884 kb on - strand, within MIT1002_00405 at 434.885 kb on - strand, within MIT1002_00405 at 434.933 kb on + strand, within MIT1002_00405 at 434.939 kb on + strand, within MIT1002_00405 at 434.941 kb on - strand, within MIT1002_00405 at 434.954 kb on + strand, within MIT1002_00405 at 435.009 kb on - strand, within MIT1002_00405 at 435.023 kb on - strand, within MIT1002_00405 at 435.080 kb on + strand, within MIT1002_00405 at 435.140 kb on + strand, within MIT1002_00405 at 435.146 kb on + strand, within MIT1002_00405 at 435.165 kb on + strand, within MIT1002_00405 at 435.189 kb on + strand, within MIT1002_00405 at 435.191 kb on + strand, within MIT1002_00405 at 435.231 kb on + strand, within MIT1002_00405 at 435.265 kb on + strand, within MIT1002_00405 at 435.265 kb on + strand, within MIT1002_00405 at 435.267 kb on + strand, within MIT1002_00405 at 435.273 kb on - strand, within MIT1002_00405 at 435.273 kb on - strand, within MIT1002_00405 at 435.273 kb on - strand, within MIT1002_00405 at 435.273 kb on - strand, within MIT1002_00405 at 435.273 kb on - strand, within MIT1002_00405 at 435.367 kb on + strand, within MIT1002_00405 at 435.433 kb on - strand at 435.433 kb on - strand at 435.451 kb on + strand at 435.451 kb on + strand at 435.452 kb on - strand at 435.459 kb on - strand at 435.506 kb on + strand at 435.514 kb on - strand at 435.555 kb on + strand at 435.598 kb on - strand at 435.611 kb on - strand at 435.616 kb on - strand at 435.621 kb on + strand at 435.624 kb on - strand at 435.629 kb on - strand at 435.629 kb on - strand at 435.654 kb on + strand at 435.662 kb on - strand at 435.791 kb on + strand at 435.799 kb on - strand at 435.836 kb on - strand at 435.836 kb on - strand at 435.863 kb on + strand at 435.871 kb on - strand at 435.972 kb on + strand, within MIT1002_00406 at 435.980 kb on - strand, within MIT1002_00406 at 435.997 kb on + strand, within MIT1002_00406 at 436.005 kb on - strand, within MIT1002_00406 at 436.005 kb on - strand, within MIT1002_00406 at 436.051 kb on + strand, within MIT1002_00406 at 436.069 kb on + strand, within MIT1002_00406 at 436.093 kb on + strand, within MIT1002_00406 at 436.130 kb on - strand, within MIT1002_00406 at 436.137 kb on + strand, within MIT1002_00406 at 436.145 kb on - strand, within MIT1002_00406 at 436.145 kb on - strand, within MIT1002_00406 at 436.240 kb on + strand, within MIT1002_00406 at 436.288 kb on + strand, within MIT1002_00406 at 436.305 kb on + strand, within MIT1002_00406 at 436.360 kb on - strand, within MIT1002_00406 at 436.360 kb on - strand, within MIT1002_00406 at 436.415 kb on + strand, within MIT1002_00406 at 436.423 kb on - strand, within MIT1002_00406 at 436.423 kb on - strand, within MIT1002_00406 at 436.423 kb on - strand, within MIT1002_00406 at 436.430 kb on + strand, within MIT1002_00406 at 436.430 kb on + strand, within MIT1002_00406 at 436.438 kb on - strand, within MIT1002_00406 at 436.438 kb on - strand, within MIT1002_00406 at 436.438 kb on - strand, within MIT1002_00406
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 4 remove 433,808 - -0.4 433,815 - +0.6 433,863 + MIT1002_00404 0.13 -0.9 433,877 + MIT1002_00404 0.14 +0.3 433,885 - MIT1002_00404 0.15 +0.1 433,896 + MIT1002_00404 0.16 -1.3 433,904 - MIT1002_00404 0.17 -0.6 433,909 - MIT1002_00404 0.18 -0.4 433,913 + MIT1002_00404 0.18 -0.5 433,968 + MIT1002_00404 0.25 -1.7 433,981 + MIT1002_00404 0.26 -2.3 434,001 + MIT1002_00404 0.29 +1.5 434,008 - MIT1002_00404 0.29 +0.6 434,047 + MIT1002_00404 0.34 +0.9 434,177 + MIT1002_00404 0.49 +1.5 434,213 - MIT1002_00404 0.53 -0.3 434,259 + MIT1002_00404 0.59 +0.8 434,264 + MIT1002_00404 0.59 -1.3 434,274 + MIT1002_00404 0.61 +0.8 434,279 - MIT1002_00404 0.61 -1.3 434,301 + MIT1002_00404 0.64 -3.5 434,340 - MIT1002_00404 0.68 +0.2 434,378 - MIT1002_00404 0.73 +0.7 434,378 - MIT1002_00404 0.73 -1.5 434,422 + MIT1002_00404 0.78 -1.1 434,430 - MIT1002_00404 0.79 -0.5 434,571 + -0.1 434,581 + +1.1 434,581 + -1.4 434,589 - -1.8 434,641 + -1.1 434,641 + -0.3 434,664 + -0.8 434,690 - +0.5 434,690 - +3.2 434,691 - +1.0 434,691 - +0.5 434,719 + +0.2 434,725 + +0.8 434,733 - -0.4 434,771 + -1.0 434,781 + -0.0 434,789 - -0.4 434,822 + +0.5 434,836 - -1.8 434,854 + +0.7 434,854 + +0.3 434,862 - MIT1002_00405 0.10 -1.0 434,872 + MIT1002_00405 0.12 +2.9 434,872 + MIT1002_00405 0.12 -0.8 434,872 + MIT1002_00405 0.12 +1.0 434,872 + MIT1002_00405 0.12 -1.3 434,880 - MIT1002_00405 0.13 +1.5 434,884 - MIT1002_00405 0.13 -0.8 434,884 - MIT1002_00405 0.13 -0.2 434,885 - MIT1002_00405 0.14 -2.7 434,933 + MIT1002_00405 0.21 -0.8 434,939 + MIT1002_00405 0.22 +0.3 434,941 - MIT1002_00405 0.22 -0.8 434,954 + MIT1002_00405 0.24 +1.0 435,009 - MIT1002_00405 0.33 -0.6 435,023 - MIT1002_00405 0.35 +1.2 435,080 + MIT1002_00405 0.43 -0.1 435,140 + MIT1002_00405 0.53 -0.1 435,146 + MIT1002_00405 0.54 +2.3 435,165 + MIT1002_00405 0.56 -0.1 435,189 + MIT1002_00405 0.60 +0.5 435,191 + MIT1002_00405 0.60 -0.2 435,231 + MIT1002_00405 0.67 -0.8 435,265 + MIT1002_00405 0.72 +1.1 435,265 + MIT1002_00405 0.72 -0.2 435,267 + MIT1002_00405 0.72 -1.2 435,273 - MIT1002_00405 0.73 -0.3 435,273 - MIT1002_00405 0.73 -0.2 435,273 - MIT1002_00405 0.73 -0.6 435,273 - MIT1002_00405 0.73 +1.4 435,273 - MIT1002_00405 0.73 -2.0 435,367 + MIT1002_00405 0.87 -0.7 435,433 - +0.1 435,433 - +0.6 435,451 + -1.0 435,451 + +1.0 435,452 - -2.9 435,459 - -1.3 435,506 + -0.2 435,514 - -0.0 435,555 + +0.8 435,598 - -0.4 435,611 - -0.4 435,616 - +1.9 435,621 + +0.1 435,624 - -1.7 435,629 - -1.4 435,629 - -0.3 435,654 + -0.1 435,662 - +0.4 435,791 + +2.5 435,799 - +0.5 435,836 - -1.1 435,836 - +0.5 435,863 + +0.1 435,871 - -3.2 435,972 + MIT1002_00406 0.12 -1.7 435,980 - MIT1002_00406 0.12 -0.9 435,997 + MIT1002_00406 0.13 -2.1 436,005 - MIT1002_00406 0.13 -1.6 436,005 - MIT1002_00406 0.13 +1.0 436,051 + MIT1002_00406 0.15 +0.6 436,069 + MIT1002_00406 0.15 +0.9 436,093 + MIT1002_00406 0.16 +1.6 436,130 - MIT1002_00406 0.18 +0.2 436,137 + MIT1002_00406 0.18 -0.6 436,145 - MIT1002_00406 0.18 -1.1 436,145 - MIT1002_00406 0.18 +0.5 436,240 + MIT1002_00406 0.22 +0.4 436,288 + MIT1002_00406 0.24 -1.3 436,305 + MIT1002_00406 0.24 +0.6 436,360 - MIT1002_00406 0.26 +0.4 436,360 - MIT1002_00406 0.26 -0.9 436,415 + MIT1002_00406 0.29 -0.5 436,423 - MIT1002_00406 0.29 +0.5 436,423 - MIT1002_00406 0.29 -0.5 436,423 - MIT1002_00406 0.29 +1.2 436,430 + MIT1002_00406 0.29 +3.8 436,430 + MIT1002_00406 0.29 +1.3 436,438 - MIT1002_00406 0.29 -0.8 436,438 - MIT1002_00406 0.29 -1.0 436,438 - MIT1002_00406 0.29 -0.4
Or see this region's nucleotide sequence