Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00251

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMIT1002_00250 and MIT1002_00251 overlap by 4 nucleotidesMIT1002_00251 and MIT1002_00252 overlap by 4 nucleotides MIT1002_00250: MIT1002_00250 - type I secretion outer membrane protein, TolC family, at 277,177 to 278,541 _00250 MIT1002_00251: MIT1002_00251 - Cation efflux system protein CusB precursor, at 278,538 to 280,556 _00251 MIT1002_00252: MIT1002_00252 - Cation efflux system protein CusA, at 280,553 to 283,690 _00252 Position (kb) 278 279 280 281Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 277.539 kb on + strand, within MIT1002_00250at 277.539 kb on + strand, within MIT1002_00250at 277.539 kb on + strand, within MIT1002_00250at 277.539 kb on + strand, within MIT1002_00250at 277.539 kb on + strand, within MIT1002_00250at 277.547 kb on - strand, within MIT1002_00250at 277.547 kb on - strand, within MIT1002_00250at 277.616 kb on + strand, within MIT1002_00250at 277.616 kb on + strand, within MIT1002_00250at 277.616 kb on + strand, within MIT1002_00250at 277.616 kb on + strand, within MIT1002_00250at 277.624 kb on - strand, within MIT1002_00250at 277.664 kb on - strand, within MIT1002_00250at 277.690 kb on + strand, within MIT1002_00250at 277.919 kb on - strand, within MIT1002_00250at 278.029 kb on - strand, within MIT1002_00250at 278.069 kb on - strand, within MIT1002_00250at 278.076 kb on + strand, within MIT1002_00250at 278.088 kb on + strand, within MIT1002_00250at 278.192 kb on + strand, within MIT1002_00250at 278.199 kb on - strand, within MIT1002_00250at 278.200 kb on - strand, within MIT1002_00250at 278.200 kb on - strand, within MIT1002_00250at 278.270 kb on - strand, within MIT1002_00250at 278.345 kb on + strand, within MIT1002_00250at 278.370 kb on - strand, within MIT1002_00250at 278.370 kb on - strand, within MIT1002_00250at 278.370 kb on - strand, within MIT1002_00250at 278.370 kb on - strand, within MIT1002_00250at 278.440 kb on + strandat 278.440 kb on + strandat 278.450 kb on + strandat 278.553 kb on + strandat 278.569 kb on + strandat 278.581 kb on + strandat 278.583 kb on + strandat 278.630 kb on - strandat 278.669 kb on + strandat 278.677 kb on - strandat 278.677 kb on - strandat 278.677 kb on - strandat 278.677 kb on - strandat 278.818 kb on + strand, within MIT1002_00251at 278.824 kb on + strand, within MIT1002_00251at 278.841 kb on + strand, within MIT1002_00251at 278.849 kb on - strand, within MIT1002_00251at 278.886 kb on + strand, within MIT1002_00251at 278.889 kb on - strand, within MIT1002_00251at 278.993 kb on + strand, within MIT1002_00251at 279.009 kb on - strand, within MIT1002_00251at 279.023 kb on - strand, within MIT1002_00251at 279.077 kb on - strand, within MIT1002_00251at 279.163 kb on + strand, within MIT1002_00251at 279.180 kb on + strand, within MIT1002_00251at 279.180 kb on + strand, within MIT1002_00251at 279.272 kb on + strand, within MIT1002_00251at 279.272 kb on + strand, within MIT1002_00251at 279.272 kb on + strand, within MIT1002_00251at 279.280 kb on - strand, within MIT1002_00251at 279.280 kb on - strand, within MIT1002_00251at 279.282 kb on + strand, within MIT1002_00251at 279.291 kb on - strand, within MIT1002_00251at 279.400 kb on + strand, within MIT1002_00251at 279.400 kb on + strand, within MIT1002_00251at 279.408 kb on - strand, within MIT1002_00251at 279.408 kb on - strand, within MIT1002_00251at 279.408 kb on - strand, within MIT1002_00251at 279.423 kb on - strand, within MIT1002_00251at 279.423 kb on - strand, within MIT1002_00251at 279.425 kb on + strand, within MIT1002_00251at 279.666 kb on + strand, within MIT1002_00251at 279.757 kb on + strand, within MIT1002_00251at 279.785 kb on - strand, within MIT1002_00251at 279.820 kb on + strand, within MIT1002_00251at 279.905 kb on + strand, within MIT1002_00251at 279.905 kb on + strand, within MIT1002_00251at 279.913 kb on - strand, within MIT1002_00251at 279.914 kb on - strand, within MIT1002_00251at 280.025 kb on + strand, within MIT1002_00251at 280.106 kb on + strand, within MIT1002_00251at 280.155 kb on - strand, within MIT1002_00251at 280.258 kb on - strand, within MIT1002_00251at 280.284 kb on + strand, within MIT1002_00251at 280.284 kb on + strand, within MIT1002_00251at 280.284 kb on + strand, within MIT1002_00251at 280.284 kb on + strand, within MIT1002_00251at 280.284 kb on + strand, within MIT1002_00251at 280.284 kb on + strand, within MIT1002_00251at 280.284 kb on + strand, within MIT1002_00251at 280.284 kb on + strand, within MIT1002_00251at 280.289 kb on + strand, within MIT1002_00251at 280.292 kb on - strand, within MIT1002_00251at 280.292 kb on - strand, within MIT1002_00251at 280.292 kb on - strand, within MIT1002_00251at 280.292 kb on - strand, within MIT1002_00251at 280.344 kb on - strand, within MIT1002_00251at 280.351 kb on + strand, within MIT1002_00251at 280.359 kb on - strandat 280.364 kb on + strandat 280.470 kb on + strandat 280.471 kb on + strandat 280.479 kb on - strandat 280.486 kb on + strandat 280.521 kb on + strandat 280.529 kb on - strandat 280.535 kb on + strandat 280.535 kb on + strandat 280.543 kb on - strandat 280.565 kb on + strandat 280.580 kb on + strandat 280.580 kb on + strandat 280.588 kb on - strandat 280.588 kb on - strandat 280.796 kb on + strandat 280.803 kb on - strandat 280.804 kb on - strandat 280.822 kb on + strandat 280.830 kb on - strandat 280.858 kb on - strandat 280.876 kb on - strand, within MIT1002_00252at 280.904 kb on + strand, within MIT1002_00252at 280.913 kb on - strand, within MIT1002_00252at 280.938 kb on - strand, within MIT1002_00252at 280.965 kb on + strand, within MIT1002_00252at 280.987 kb on + strand, within MIT1002_00252at 281.072 kb on - strand, within MIT1002_00252at 281.094 kb on + strand, within MIT1002_00252at 281.100 kb on + strand, within MIT1002_00252at 281.211 kb on + strand, within MIT1002_00252at 281.211 kb on + strand, within MIT1002_00252at 281.219 kb on - strand, within MIT1002_00252at 281.221 kb on - strand, within MIT1002_00252at 281.221 kb on - strand, within MIT1002_00252at 281.239 kb on - strand, within MIT1002_00252at 281.345 kb on + strand, within MIT1002_00252at 281.363 kb on - strand, within MIT1002_00252at 281.371 kb on + strand, within MIT1002_00252at 281.373 kb on + strand, within MIT1002_00252at 281.373 kb on + strand, within MIT1002_00252at 281.405 kb on - strand, within MIT1002_00252at 281.505 kb on + strand, within MIT1002_00252at 281.505 kb on - strand, within MIT1002_00252at 281.513 kb on - strand, within MIT1002_00252at 281.522 kb on + strand, within MIT1002_00252at 281.530 kb on - strand, within MIT1002_00252at 281.532 kb on + strand, within MIT1002_00252

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 4
remove
277,539 + MIT1002_00250 0.27 -0.3
277,539 + MIT1002_00250 0.27 +1.5
277,539 + MIT1002_00250 0.27 -0.7
277,539 + MIT1002_00250 0.27 -1.2
277,539 + MIT1002_00250 0.27 -1.0
277,547 - MIT1002_00250 0.27 -0.3
277,547 - MIT1002_00250 0.27 -0.5
277,616 + MIT1002_00250 0.32 -1.1
277,616 + MIT1002_00250 0.32 -1.2
277,616 + MIT1002_00250 0.32 +0.9
277,616 + MIT1002_00250 0.32 +1.1
277,624 - MIT1002_00250 0.33 -1.0
277,664 - MIT1002_00250 0.36 -1.3
277,690 + MIT1002_00250 0.38 +0.4
277,919 - MIT1002_00250 0.54 -0.5
278,029 - MIT1002_00250 0.62 -1.6
278,069 - MIT1002_00250 0.65 +0.2
278,076 + MIT1002_00250 0.66 -0.0
278,088 + MIT1002_00250 0.67 -0.7
278,192 + MIT1002_00250 0.74 +2.2
278,199 - MIT1002_00250 0.75 +0.0
278,200 - MIT1002_00250 0.75 +1.4
278,200 - MIT1002_00250 0.75 +0.5
278,270 - MIT1002_00250 0.80 +2.2
278,345 + MIT1002_00250 0.86 +0.3
278,370 - MIT1002_00250 0.87 -2.5
278,370 - MIT1002_00250 0.87 +1.0
278,370 - MIT1002_00250 0.87 -0.6
278,370 - MIT1002_00250 0.87 +1.3
278,440 + -0.5
278,440 + -0.4
278,450 + -0.8
278,553 + +0.5
278,569 + -0.3
278,581 + -1.1
278,583 + -0.9
278,630 - -0.8
278,669 + +0.0
278,677 - -1.4
278,677 - -0.4
278,677 - -1.1
278,677 - -0.7
278,818 + MIT1002_00251 0.14 +0.5
278,824 + MIT1002_00251 0.14 +0.2
278,841 + MIT1002_00251 0.15 +1.7
278,849 - MIT1002_00251 0.15 -1.0
278,886 + MIT1002_00251 0.17 -0.0
278,889 - MIT1002_00251 0.17 -0.4
278,993 + MIT1002_00251 0.23 +0.1
279,009 - MIT1002_00251 0.23 +0.4
279,023 - MIT1002_00251 0.24 -2.5
279,077 - MIT1002_00251 0.27 -0.0
279,163 + MIT1002_00251 0.31 +0.6
279,180 + MIT1002_00251 0.32 -0.0
279,180 + MIT1002_00251 0.32 +0.1
279,272 + MIT1002_00251 0.36 +1.0
279,272 + MIT1002_00251 0.36 -0.5
279,272 + MIT1002_00251 0.36 +0.6
279,280 - MIT1002_00251 0.37 -0.3
279,280 - MIT1002_00251 0.37 -0.2
279,282 + MIT1002_00251 0.37 +0.3
279,291 - MIT1002_00251 0.37 -0.2
279,400 + MIT1002_00251 0.43 +0.5
279,400 + MIT1002_00251 0.43 -0.7
279,408 - MIT1002_00251 0.43 -0.1
279,408 - MIT1002_00251 0.43 -0.4
279,408 - MIT1002_00251 0.43 +0.8
279,423 - MIT1002_00251 0.44 +0.7
279,423 - MIT1002_00251 0.44 +2.0
279,425 + MIT1002_00251 0.44 -0.9
279,666 + MIT1002_00251 0.56 -0.3
279,757 + MIT1002_00251 0.60 -0.4
279,785 - MIT1002_00251 0.62 +0.5
279,820 + MIT1002_00251 0.63 +0.3
279,905 + MIT1002_00251 0.68 -2.3
279,905 + MIT1002_00251 0.68 -2.0
279,913 - MIT1002_00251 0.68 +0.4
279,914 - MIT1002_00251 0.68 -2.9
280,025 + MIT1002_00251 0.74 -0.7
280,106 + MIT1002_00251 0.78 +0.3
280,155 - MIT1002_00251 0.80 -2.4
280,258 - MIT1002_00251 0.85 -0.3
280,284 + MIT1002_00251 0.86 -0.2
280,284 + MIT1002_00251 0.86 +1.7
280,284 + MIT1002_00251 0.86 +0.1
280,284 + MIT1002_00251 0.86 -1.5
280,284 + MIT1002_00251 0.86 +0.6
280,284 + MIT1002_00251 0.86 +0.1
280,284 + MIT1002_00251 0.86 +1.2
280,284 + MIT1002_00251 0.86 +0.5
280,289 + MIT1002_00251 0.87 -0.1
280,292 - MIT1002_00251 0.87 +0.2
280,292 - MIT1002_00251 0.87 +0.5
280,292 - MIT1002_00251 0.87 -0.5
280,292 - MIT1002_00251 0.87 +0.5
280,344 - MIT1002_00251 0.89 -0.3
280,351 + MIT1002_00251 0.90 +0.3
280,359 - -0.3
280,364 + +0.2
280,470 + +0.9
280,471 + -0.9
280,479 - +0.1
280,486 + -2.2
280,521 + +0.3
280,529 - -0.9
280,535 + +0.3
280,535 + +0.4
280,543 - +0.6
280,565 + +0.1
280,580 + +1.6
280,580 + -0.4
280,588 - -0.4
280,588 - +1.3
280,796 + +0.4
280,803 - +1.0
280,804 - -0.7
280,822 + -0.6
280,830 - -0.1
280,858 - -0.3
280,876 - MIT1002_00252 0.10 -1.1
280,904 + MIT1002_00252 0.11 -0.5
280,913 - MIT1002_00252 0.11 +0.1
280,938 - MIT1002_00252 0.12 +0.1
280,965 + MIT1002_00252 0.13 +1.3
280,987 + MIT1002_00252 0.14 -3.0
281,072 - MIT1002_00252 0.17 +0.9
281,094 + MIT1002_00252 0.17 -0.1
281,100 + MIT1002_00252 0.17 +0.5
281,211 + MIT1002_00252 0.21 -0.2
281,211 + MIT1002_00252 0.21 +1.1
281,219 - MIT1002_00252 0.21 -0.5
281,221 - MIT1002_00252 0.21 +0.5
281,221 - MIT1002_00252 0.21 +1.8
281,239 - MIT1002_00252 0.22 +1.5
281,345 + MIT1002_00252 0.25 -0.6
281,363 - MIT1002_00252 0.26 +0.1
281,371 + MIT1002_00252 0.26 -0.4
281,373 + MIT1002_00252 0.26 -0.5
281,373 + MIT1002_00252 0.26 -0.2
281,405 - MIT1002_00252 0.27 -0.1
281,505 + MIT1002_00252 0.30 +0.5
281,505 - MIT1002_00252 0.30 -1.1
281,513 - MIT1002_00252 0.31 -1.2
281,522 + MIT1002_00252 0.31 +0.1
281,530 - MIT1002_00252 0.31 +1.8
281,532 + MIT1002_00252 0.31 -0.1

Or see this region's nucleotide sequence