Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00235

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMIT1002_00234 and MIT1002_00235 are separated by 107 nucleotidesMIT1002_00235 and MIT1002_00236 are separated by 149 nucleotides MIT1002_00234: MIT1002_00234 - Sensor protein ZraS, at 262,265 to 263,911 _00234 MIT1002_00235: MIT1002_00235 - Glycogen synthase, at 264,019 to 265,443 _00235 MIT1002_00236: MIT1002_00236 - Ribosomal RNA small subunit methyltransferase C, at 265,593 to 266,675 _00236 Position (kb) 264 265 266Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 263.075 kb on - strand, within MIT1002_00234at 263.090 kb on - strand, within MIT1002_00234at 263.116 kb on + strand, within MIT1002_00234at 263.116 kb on + strand, within MIT1002_00234at 263.124 kb on - strand, within MIT1002_00234at 263.272 kb on + strand, within MIT1002_00234at 263.272 kb on + strand, within MIT1002_00234at 263.272 kb on + strand, within MIT1002_00234at 263.280 kb on - strand, within MIT1002_00234at 263.303 kb on + strand, within MIT1002_00234at 263.327 kb on - strand, within MIT1002_00234at 263.377 kb on - strand, within MIT1002_00234at 263.377 kb on - strand, within MIT1002_00234at 263.416 kb on + strand, within MIT1002_00234at 263.522 kb on + strand, within MIT1002_00234at 263.565 kb on + strand, within MIT1002_00234at 263.589 kb on - strand, within MIT1002_00234at 263.645 kb on - strand, within MIT1002_00234at 263.723 kb on + strand, within MIT1002_00234at 263.779 kb on - strandat 263.793 kb on + strandat 263.801 kb on - strandat 263.820 kb on - strandat 263.822 kb on + strandat 263.830 kb on - strandat 263.830 kb on - strandat 263.959 kb on + strandat 263.978 kb on + strandat 264.022 kb on - strandat 264.443 kb on - strand, within MIT1002_00235at 264.455 kb on - strand, within MIT1002_00235at 264.759 kb on + strand, within MIT1002_00235at 264.769 kb on + strand, within MIT1002_00235at 265.173 kb on + strand, within MIT1002_00235at 265.203 kb on - strand, within MIT1002_00235at 265.438 kb on + strandat 265.457 kb on - strandat 265.468 kb on + strandat 265.484 kb on - strandat 265.628 kb on + strandat 265.636 kb on + strandat 265.638 kb on + strandat 265.638 kb on + strandat 265.638 kb on + strandat 265.639 kb on + strandat 265.639 kb on + strandat 265.644 kb on - strandat 265.646 kb on - strandat 265.646 kb on - strandat 265.646 kb on - strandat 265.646 kb on - strandat 265.646 kb on - strandat 265.646 kb on - strandat 265.646 kb on - strandat 265.647 kb on - strandat 265.648 kb on + strandat 265.656 kb on - strandat 265.670 kb on + strandat 265.670 kb on + strandat 265.673 kb on - strandat 265.678 kb on - strandat 265.706 kb on + strand, within MIT1002_00236at 265.709 kb on - strand, within MIT1002_00236at 265.714 kb on - strand, within MIT1002_00236at 265.714 kb on - strand, within MIT1002_00236at 265.765 kb on - strand, within MIT1002_00236at 265.774 kb on + strand, within MIT1002_00236at 265.852 kb on + strand, within MIT1002_00236at 265.852 kb on + strand, within MIT1002_00236at 265.860 kb on - strand, within MIT1002_00236at 265.860 kb on - strand, within MIT1002_00236at 265.860 kb on - strand, within MIT1002_00236at 265.880 kb on + strand, within MIT1002_00236at 265.880 kb on + strand, within MIT1002_00236at 265.890 kb on - strand, within MIT1002_00236at 265.892 kb on + strand, within MIT1002_00236at 265.895 kb on - strand, within MIT1002_00236at 265.895 kb on - strand, within MIT1002_00236at 265.900 kb on - strand, within MIT1002_00236at 265.900 kb on - strand, within MIT1002_00236at 265.900 kb on - strand, within MIT1002_00236at 266.023 kb on - strand, within MIT1002_00236at 266.031 kb on - strand, within MIT1002_00236at 266.115 kb on - strand, within MIT1002_00236at 266.115 kb on - strand, within MIT1002_00236at 266.166 kb on + strand, within MIT1002_00236at 266.202 kb on - strand, within MIT1002_00236at 266.235 kb on + strand, within MIT1002_00236at 266.269 kb on - strand, within MIT1002_00236at 266.410 kb on - strand, within MIT1002_00236

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 4
remove
263,075 - MIT1002_00234 0.49 -1.4
263,090 - MIT1002_00234 0.50 +2.5
263,116 + MIT1002_00234 0.52 +0.4
263,116 + MIT1002_00234 0.52 +0.0
263,124 - MIT1002_00234 0.52 -0.7
263,272 + MIT1002_00234 0.61 -0.1
263,272 + MIT1002_00234 0.61 +0.3
263,272 + MIT1002_00234 0.61 +0.4
263,280 - MIT1002_00234 0.62 -0.2
263,303 + MIT1002_00234 0.63 -2.7
263,327 - MIT1002_00234 0.64 +0.9
263,377 - MIT1002_00234 0.68 -0.0
263,377 - MIT1002_00234 0.68 -0.0
263,416 + MIT1002_00234 0.70 +0.0
263,522 + MIT1002_00234 0.76 +0.6
263,565 + MIT1002_00234 0.79 -1.1
263,589 - MIT1002_00234 0.80 +0.1
263,645 - MIT1002_00234 0.84 +0.3
263,723 + MIT1002_00234 0.89 +0.5
263,779 - -0.4
263,793 + -0.9
263,801 - +0.8
263,820 - -0.8
263,822 + +0.3
263,830 - -2.2
263,830 - -0.4
263,959 + -2.1
263,978 + +0.7
264,022 - -0.5
264,443 - MIT1002_00235 0.30 -3.1
264,455 - MIT1002_00235 0.31 -1.3
264,759 + MIT1002_00235 0.52 -0.2
264,769 + MIT1002_00235 0.53 -1.6
265,173 + MIT1002_00235 0.81 -3.7
265,203 - MIT1002_00235 0.83 -2.2
265,438 + -3.1
265,457 - -0.5
265,468 + -0.5
265,484 - -0.3
265,628 + -0.4
265,636 + -0.5
265,638 + +0.3
265,638 + -0.7
265,638 + -0.2
265,639 + -1.2
265,639 + +0.2
265,644 - -1.1
265,646 - +0.0
265,646 - -1.0
265,646 - -1.3
265,646 - -0.2
265,646 - -0.8
265,646 - +0.9
265,646 - -1.7
265,647 - +0.7
265,648 + +0.0
265,656 - +0.1
265,670 + -0.8
265,670 + -0.9
265,673 - -1.8
265,678 - +1.0
265,706 + MIT1002_00236 0.10 +0.1
265,709 - MIT1002_00236 0.11 +0.1
265,714 - MIT1002_00236 0.11 -1.6
265,714 - MIT1002_00236 0.11 -0.4
265,765 - MIT1002_00236 0.16 -0.7
265,774 + MIT1002_00236 0.17 +0.5
265,852 + MIT1002_00236 0.24 -0.2
265,852 + MIT1002_00236 0.24 -0.0
265,860 - MIT1002_00236 0.25 -2.5
265,860 - MIT1002_00236 0.25 -1.2
265,860 - MIT1002_00236 0.25 -0.3
265,880 + MIT1002_00236 0.27 -1.0
265,880 + MIT1002_00236 0.27 -0.5
265,890 - MIT1002_00236 0.27 -0.6
265,892 + MIT1002_00236 0.28 +0.3
265,895 - MIT1002_00236 0.28 -3.1
265,895 - MIT1002_00236 0.28 -0.2
265,900 - MIT1002_00236 0.28 +0.4
265,900 - MIT1002_00236 0.28 -1.3
265,900 - MIT1002_00236 0.28 -0.6
266,023 - MIT1002_00236 0.40 +1.7
266,031 - MIT1002_00236 0.40 -3.5
266,115 - MIT1002_00236 0.48 +0.3
266,115 - MIT1002_00236 0.48 -0.0
266,166 + MIT1002_00236 0.53 +0.8
266,202 - MIT1002_00236 0.56 -0.4
266,235 + MIT1002_00236 0.59 +0.5
266,269 - MIT1002_00236 0.62 +0.1
266,410 - MIT1002_00236 0.75 +0.7

Or see this region's nucleotide sequence