Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00233 and MIT1002_00234 are separated by 154 nucleotides MIT1002_00234 and MIT1002_00235 are separated by 107 nucleotides
MIT1002_00233: MIT1002_00233 - Dye resistance protein, at 261,403 to 262,110
_00233
MIT1002_00234: MIT1002_00234 - Sensor protein ZraS, at 262,265 to 263,911
_00234
MIT1002_00235: MIT1002_00235 - Glycogen synthase, at 264,019 to 265,443
_00235
Position (kb) 262
263
264 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 261.399 kb on + strand at 261.399 kb on + strand at 261.402 kb on - strand at 261.407 kb on - strand at 261.516 kb on + strand, within MIT1002_00233 at 261.538 kb on + strand, within MIT1002_00233 at 261.591 kb on - strand, within MIT1002_00233 at 261.740 kb on - strand, within MIT1002_00233 at 261.877 kb on + strand, within MIT1002_00233 at 261.902 kb on + strand, within MIT1002_00233 at 261.906 kb on - strand, within MIT1002_00233 at 262.023 kb on + strand, within MIT1002_00233 at 262.031 kb on - strand, within MIT1002_00233 at 262.031 kb on - strand, within MIT1002_00233 at 262.112 kb on + strand at 262.114 kb on + strand at 262.122 kb on - strand at 262.224 kb on - strand at 262.224 kb on - strand at 262.224 kb on - strand at 262.381 kb on - strand at 262.485 kb on + strand, within MIT1002_00234 at 262.494 kb on + strand, within MIT1002_00234 at 262.531 kb on + strand, within MIT1002_00234 at 262.562 kb on - strand, within MIT1002_00234 at 262.562 kb on - strand, within MIT1002_00234 at 262.636 kb on + strand, within MIT1002_00234 at 262.636 kb on + strand, within MIT1002_00234 at 262.644 kb on - strand, within MIT1002_00234 at 262.653 kb on + strand, within MIT1002_00234 at 262.702 kb on - strand, within MIT1002_00234 at 262.761 kb on + strand, within MIT1002_00234 at 262.769 kb on - strand, within MIT1002_00234 at 262.779 kb on - strand, within MIT1002_00234 at 262.789 kb on - strand, within MIT1002_00234 at 262.797 kb on + strand, within MIT1002_00234 at 262.858 kb on + strand, within MIT1002_00234 at 262.906 kb on + strand, within MIT1002_00234 at 262.914 kb on - strand, within MIT1002_00234 at 262.924 kb on - strand, within MIT1002_00234 at 262.942 kb on + strand, within MIT1002_00234 at 262.942 kb on + strand, within MIT1002_00234 at 262.942 kb on + strand, within MIT1002_00234 at 262.942 kb on + strand, within MIT1002_00234 at 262.943 kb on + strand, within MIT1002_00234 at 262.943 kb on + strand, within MIT1002_00234 at 262.950 kb on - strand, within MIT1002_00234 at 262.950 kb on - strand, within MIT1002_00234 at 262.950 kb on - strand, within MIT1002_00234 at 262.950 kb on - strand, within MIT1002_00234 at 262.951 kb on - strand, within MIT1002_00234 at 263.075 kb on - strand, within MIT1002_00234 at 263.090 kb on - strand, within MIT1002_00234 at 263.116 kb on + strand, within MIT1002_00234 at 263.116 kb on + strand, within MIT1002_00234 at 263.124 kb on - strand, within MIT1002_00234 at 263.272 kb on + strand, within MIT1002_00234 at 263.272 kb on + strand, within MIT1002_00234 at 263.272 kb on + strand, within MIT1002_00234 at 263.280 kb on - strand, within MIT1002_00234 at 263.303 kb on + strand, within MIT1002_00234 at 263.327 kb on - strand, within MIT1002_00234 at 263.377 kb on - strand, within MIT1002_00234 at 263.377 kb on - strand, within MIT1002_00234 at 263.416 kb on + strand, within MIT1002_00234 at 263.522 kb on + strand, within MIT1002_00234 at 263.565 kb on + strand, within MIT1002_00234 at 263.589 kb on - strand, within MIT1002_00234 at 263.645 kb on - strand, within MIT1002_00234 at 263.723 kb on + strand, within MIT1002_00234 at 263.779 kb on - strand at 263.793 kb on + strand at 263.801 kb on - strand at 263.820 kb on - strand at 263.822 kb on + strand at 263.830 kb on - strand at 263.830 kb on - strand at 263.959 kb on + strand at 263.978 kb on + strand at 264.022 kb on - strand at 264.443 kb on - strand, within MIT1002_00235 at 264.455 kb on - strand, within MIT1002_00235 at 264.759 kb on + strand, within MIT1002_00235 at 264.769 kb on + strand, within MIT1002_00235
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 4 remove 261,399 + +0.0 261,399 + -1.5 261,402 - -1.3 261,407 - -0.2 261,516 + MIT1002_00233 0.16 -0.2 261,538 + MIT1002_00233 0.19 -3.0 261,591 - MIT1002_00233 0.27 +0.7 261,740 - MIT1002_00233 0.48 -0.7 261,877 + MIT1002_00233 0.67 -1.7 261,902 + MIT1002_00233 0.70 -0.7 261,906 - MIT1002_00233 0.71 -1.2 262,023 + MIT1002_00233 0.88 -0.9 262,031 - MIT1002_00233 0.89 -2.5 262,031 - MIT1002_00233 0.89 +0.1 262,112 + -0.2 262,114 + -2.2 262,122 - +0.3 262,224 - -1.7 262,224 - -1.6 262,224 - -1.7 262,381 - +1.0 262,485 + MIT1002_00234 0.13 +1.3 262,494 + MIT1002_00234 0.14 +0.4 262,531 + MIT1002_00234 0.16 +0.3 262,562 - MIT1002_00234 0.18 +1.2 262,562 - MIT1002_00234 0.18 +1.6 262,636 + MIT1002_00234 0.23 +1.3 262,636 + MIT1002_00234 0.23 +2.9 262,644 - MIT1002_00234 0.23 +1.5 262,653 + MIT1002_00234 0.24 +1.2 262,702 - MIT1002_00234 0.27 +0.4 262,761 + MIT1002_00234 0.30 +0.0 262,769 - MIT1002_00234 0.31 +1.3 262,779 - MIT1002_00234 0.31 -0.7 262,789 - MIT1002_00234 0.32 +1.0 262,797 + MIT1002_00234 0.32 -1.7 262,858 + MIT1002_00234 0.36 -1.6 262,906 + MIT1002_00234 0.39 +0.9 262,914 - MIT1002_00234 0.39 -0.5 262,924 - MIT1002_00234 0.40 +0.2 262,942 + MIT1002_00234 0.41 +1.6 262,942 + MIT1002_00234 0.41 +0.0 262,942 + MIT1002_00234 0.41 +0.6 262,942 + MIT1002_00234 0.41 +0.8 262,943 + MIT1002_00234 0.41 -1.0 262,943 + MIT1002_00234 0.41 +0.1 262,950 - MIT1002_00234 0.42 -1.4 262,950 - MIT1002_00234 0.42 +1.0 262,950 - MIT1002_00234 0.42 -0.7 262,950 - MIT1002_00234 0.42 +0.8 262,951 - MIT1002_00234 0.42 -0.1 263,075 - MIT1002_00234 0.49 -1.4 263,090 - MIT1002_00234 0.50 +2.5 263,116 + MIT1002_00234 0.52 +0.4 263,116 + MIT1002_00234 0.52 +0.0 263,124 - MIT1002_00234 0.52 -0.7 263,272 + MIT1002_00234 0.61 -0.1 263,272 + MIT1002_00234 0.61 +0.3 263,272 + MIT1002_00234 0.61 +0.4 263,280 - MIT1002_00234 0.62 -0.2 263,303 + MIT1002_00234 0.63 -2.7 263,327 - MIT1002_00234 0.64 +0.9 263,377 - MIT1002_00234 0.68 -0.0 263,377 - MIT1002_00234 0.68 -0.0 263,416 + MIT1002_00234 0.70 +0.0 263,522 + MIT1002_00234 0.76 +0.6 263,565 + MIT1002_00234 0.79 -1.1 263,589 - MIT1002_00234 0.80 +0.1 263,645 - MIT1002_00234 0.84 +0.3 263,723 + MIT1002_00234 0.89 +0.5 263,779 - -0.4 263,793 + -0.9 263,801 - +0.8 263,820 - -0.8 263,822 + +0.3 263,830 - -2.2 263,830 - -0.4 263,959 + -2.1 263,978 + +0.7 264,022 - -0.5 264,443 - MIT1002_00235 0.30 -3.1 264,455 - MIT1002_00235 0.31 -1.3 264,759 + MIT1002_00235 0.52 -0.2 264,769 + MIT1002_00235 0.53 -1.6
Or see this region's nucleotide sequence