Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00198 and MIT1002_00199 are separated by 160 nucleotides MIT1002_00199 and MIT1002_00200 are separated by 304 nucleotides
MIT1002_00198: MIT1002_00198 - Glycerol kinase, at 220,811 to 222,295
_00198
MIT1002_00199: MIT1002_00199 - Glycerol-3-phosphate regulon repressor, at 222,456 to 223,214
_00199
MIT1002_00200: MIT1002_00200 - Aerobic glycerol-3-phosphate dehydrogenase, at 223,519 to 225,066
_00200
Position (kb) 222
223
224 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 221.466 kb on - strand, within MIT1002_00198 at 221.473 kb on - strand, within MIT1002_00198 at 221.475 kb on - strand, within MIT1002_00198 at 221.577 kb on + strand, within MIT1002_00198 at 221.577 kb on - strand, within MIT1002_00198 at 221.590 kb on - strand, within MIT1002_00198 at 221.629 kb on - strand, within MIT1002_00198 at 221.639 kb on + strand, within MIT1002_00198 at 221.647 kb on - strand, within MIT1002_00198 at 221.647 kb on - strand, within MIT1002_00198 at 221.647 kb on - strand, within MIT1002_00198 at 221.656 kb on + strand, within MIT1002_00198 at 221.656 kb on + strand, within MIT1002_00198 at 221.664 kb on - strand, within MIT1002_00198 at 221.698 kb on - strand, within MIT1002_00198 at 221.769 kb on + strand, within MIT1002_00198 at 221.796 kb on + strand, within MIT1002_00198 at 221.813 kb on - strand, within MIT1002_00198 at 221.813 kb on - strand, within MIT1002_00198 at 221.820 kb on + strand, within MIT1002_00198 at 221.847 kb on - strand, within MIT1002_00198 at 221.847 kb on - strand, within MIT1002_00198 at 221.848 kb on + strand, within MIT1002_00198 at 221.903 kb on - strand, within MIT1002_00198 at 222.042 kb on - strand, within MIT1002_00198 at 222.055 kb on + strand, within MIT1002_00198 at 222.055 kb on + strand, within MIT1002_00198 at 222.063 kb on - strand, within MIT1002_00198 at 222.063 kb on - strand, within MIT1002_00198 at 222.063 kb on - strand, within MIT1002_00198 at 222.063 kb on - strand, within MIT1002_00198 at 222.080 kb on + strand, within MIT1002_00198 at 222.122 kb on + strand, within MIT1002_00198 at 222.135 kb on - strand, within MIT1002_00198 at 222.135 kb on - strand, within MIT1002_00198 at 222.160 kb on + strand at 222.203 kb on - strand at 222.205 kb on + strand at 222.213 kb on - strand at 222.219 kb on + strand at 222.222 kb on - strand at 222.227 kb on - strand at 222.227 kb on - strand at 222.227 kb on - strand at 222.266 kb on - strand at 222.268 kb on + strand at 222.299 kb on - strand at 222.311 kb on - strand at 222.344 kb on + strand at 222.573 kb on - strand, within MIT1002_00199 at 222.579 kb on - strand, within MIT1002_00199 at 222.579 kb on - strand, within MIT1002_00199 at 222.605 kb on - strand, within MIT1002_00199 at 222.677 kb on - strand, within MIT1002_00199 at 222.818 kb on - strand, within MIT1002_00199 at 222.831 kb on + strand, within MIT1002_00199 at 222.840 kb on - strand, within MIT1002_00199 at 222.936 kb on + strand, within MIT1002_00199 at 222.944 kb on - strand, within MIT1002_00199 at 222.991 kb on + strand, within MIT1002_00199 at 222.991 kb on + strand, within MIT1002_00199 at 222.999 kb on - strand, within MIT1002_00199 at 222.999 kb on - strand, within MIT1002_00199 at 222.999 kb on - strand, within MIT1002_00199 at 222.999 kb on - strand, within MIT1002_00199 at 223.211 kb on - strand at 223.251 kb on - strand at 223.251 kb on - strand at 223.253 kb on + strand at 223.261 kb on - strand at 223.308 kb on - strand at 223.323 kb on + strand at 223.323 kb on + strand at 223.323 kb on + strand at 223.325 kb on + strand at 223.331 kb on - strand at 223.331 kb on - strand at 223.331 kb on - strand at 223.331 kb on - strand at 223.333 kb on - strand at 223.333 kb on - strand at 223.448 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 4 remove 221,466 - MIT1002_00198 0.44 -0.3 221,473 - MIT1002_00198 0.45 +0.4 221,475 - MIT1002_00198 0.45 +0.9 221,577 + MIT1002_00198 0.52 +0.6 221,577 - MIT1002_00198 0.52 -0.6 221,590 - MIT1002_00198 0.52 +0.3 221,629 - MIT1002_00198 0.55 +0.3 221,639 + MIT1002_00198 0.56 +0.3 221,647 - MIT1002_00198 0.56 +0.4 221,647 - MIT1002_00198 0.56 +0.3 221,647 - MIT1002_00198 0.56 +1.0 221,656 + MIT1002_00198 0.57 +0.5 221,656 + MIT1002_00198 0.57 -0.4 221,664 - MIT1002_00198 0.57 +1.0 221,698 - MIT1002_00198 0.60 +1.1 221,769 + MIT1002_00198 0.65 +0.5 221,796 + MIT1002_00198 0.66 +0.1 221,813 - MIT1002_00198 0.67 +0.5 221,813 - MIT1002_00198 0.67 +0.8 221,820 + MIT1002_00198 0.68 +1.6 221,847 - MIT1002_00198 0.70 +0.3 221,847 - MIT1002_00198 0.70 +0.4 221,848 + MIT1002_00198 0.70 +0.2 221,903 - MIT1002_00198 0.74 -2.4 222,042 - MIT1002_00198 0.83 +0.6 222,055 + MIT1002_00198 0.84 -0.3 222,055 + MIT1002_00198 0.84 +0.1 222,063 - MIT1002_00198 0.84 +0.7 222,063 - MIT1002_00198 0.84 +0.5 222,063 - MIT1002_00198 0.84 +0.5 222,063 - MIT1002_00198 0.84 +0.6 222,080 + MIT1002_00198 0.85 -0.9 222,122 + MIT1002_00198 0.88 +1.0 222,135 - MIT1002_00198 0.89 +0.1 222,135 - MIT1002_00198 0.89 +0.7 222,160 + +0.7 222,203 - +0.5 222,205 + +2.0 222,213 - +1.0 222,219 + +1.0 222,222 - -0.9 222,227 - +0.4 222,227 - +0.4 222,227 - +0.4 222,266 - -0.8 222,268 + -0.3 222,299 - +0.0 222,311 - +0.7 222,344 + +0.5 222,573 - MIT1002_00199 0.15 -0.7 222,579 - MIT1002_00199 0.16 -3.0 222,579 - MIT1002_00199 0.16 -0.4 222,605 - MIT1002_00199 0.20 -0.8 222,677 - MIT1002_00199 0.29 -0.7 222,818 - MIT1002_00199 0.48 -0.1 222,831 + MIT1002_00199 0.49 -1.5 222,840 - MIT1002_00199 0.51 +0.3 222,936 + MIT1002_00199 0.63 -0.5 222,944 - MIT1002_00199 0.64 -0.6 222,991 + MIT1002_00199 0.70 +0.1 222,991 + MIT1002_00199 0.70 -6.4 222,999 - MIT1002_00199 0.72 +0.6 222,999 - MIT1002_00199 0.72 -0.5 222,999 - MIT1002_00199 0.72 -1.0 222,999 - MIT1002_00199 0.72 +0.6 223,211 - +1.3 223,251 - +0.1 223,251 - -1.2 223,253 + -0.1 223,261 - -2.2 223,308 - +1.5 223,323 + +1.0 223,323 + -1.1 223,323 + +0.1 223,325 + +2.3 223,331 - -0.9 223,331 - +1.2 223,331 - +0.6 223,331 - -2.5 223,333 - +0.8 223,333 - +0.0 223,448 - +0.5
Or see this region's nucleotide sequence