Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00187

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00186 and MIT1002_00187 are separated by 328 nucleotidesMIT1002_00187 and MIT1002_00188 are separated by 172 nucleotides MIT1002_00186: MIT1002_00186 - Mgl repressor and galactose ultrainduction factor, at 202,127 to 203,128 _00186 MIT1002_00187: MIT1002_00187 - Aldose 1-epimerase precursor, at 203,457 to 204,476 _00187 MIT1002_00188: MIT1002_00188 - Galactose-1-phosphate uridylyltransferase, at 204,649 to 205,704 _00188 Position (kb) 203 204 205Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 202.458 kb on + strand, within MIT1002_00186at 202.462 kb on - strand, within MIT1002_00186at 202.505 kb on + strand, within MIT1002_00186at 202.538 kb on - strand, within MIT1002_00186at 202.540 kb on + strand, within MIT1002_00186at 202.560 kb on - strand, within MIT1002_00186at 202.605 kb on - strand, within MIT1002_00186at 202.616 kb on + strand, within MIT1002_00186at 202.709 kb on + strand, within MIT1002_00186at 202.709 kb on + strand, within MIT1002_00186at 202.717 kb on - strand, within MIT1002_00186at 202.746 kb on - strand, within MIT1002_00186at 202.763 kb on - strand, within MIT1002_00186at 202.768 kb on - strand, within MIT1002_00186at 202.776 kb on - strand, within MIT1002_00186at 202.807 kb on - strand, within MIT1002_00186at 202.807 kb on - strand, within MIT1002_00186at 202.845 kb on - strand, within MIT1002_00186at 202.895 kb on + strand, within MIT1002_00186at 202.895 kb on + strand, within MIT1002_00186at 202.903 kb on - strand, within MIT1002_00186at 202.903 kb on - strand, within MIT1002_00186at 202.940 kb on + strand, within MIT1002_00186at 202.986 kb on - strand, within MIT1002_00186at 203.047 kb on + strandat 203.055 kb on - strandat 203.055 kb on - strandat 203.055 kb on - strandat 203.055 kb on - strandat 203.068 kb on + strandat 203.068 kb on + strandat 203.068 kb on + strandat 203.068 kb on + strandat 203.076 kb on - strandat 203.076 kb on - strandat 203.076 kb on - strandat 203.235 kb on - strandat 203.265 kb on + strandat 203.292 kb on + strandat 203.321 kb on - strandat 203.358 kb on - strandat 203.509 kb on + strandat 203.531 kb on + strandat 203.531 kb on + strandat 203.539 kb on + strandat 203.544 kb on + strandat 203.614 kb on - strand, within MIT1002_00187at 203.634 kb on + strand, within MIT1002_00187at 203.634 kb on + strand, within MIT1002_00187at 203.634 kb on + strand, within MIT1002_00187at 203.634 kb on + strand, within MIT1002_00187at 203.639 kb on + strand, within MIT1002_00187at 203.642 kb on - strand, within MIT1002_00187at 203.642 kb on - strand, within MIT1002_00187at 203.642 kb on - strand, within MIT1002_00187at 203.644 kb on + strand, within MIT1002_00187at 203.647 kb on - strand, within MIT1002_00187at 203.689 kb on - strand, within MIT1002_00187at 203.720 kb on + strand, within MIT1002_00187at 203.720 kb on + strand, within MIT1002_00187at 203.725 kb on + strand, within MIT1002_00187at 203.728 kb on - strand, within MIT1002_00187at 203.730 kb on + strand, within MIT1002_00187at 203.730 kb on + strand, within MIT1002_00187at 203.730 kb on + strand, within MIT1002_00187at 203.738 kb on - strand, within MIT1002_00187at 203.738 kb on - strand, within MIT1002_00187at 203.738 kb on - strand, within MIT1002_00187at 203.738 kb on - strand, within MIT1002_00187at 203.771 kb on - strand, within MIT1002_00187at 203.798 kb on + strand, within MIT1002_00187at 203.806 kb on - strand, within MIT1002_00187at 203.827 kb on - strand, within MIT1002_00187at 203.858 kb on - strand, within MIT1002_00187at 203.868 kb on - strand, within MIT1002_00187at 203.871 kb on + strand, within MIT1002_00187at 203.980 kb on + strand, within MIT1002_00187at 204.034 kb on - strand, within MIT1002_00187at 204.034 kb on - strand, within MIT1002_00187at 204.165 kb on - strand, within MIT1002_00187at 204.195 kb on + strand, within MIT1002_00187at 204.202 kb on - strand, within MIT1002_00187at 204.214 kb on + strand, within MIT1002_00187at 204.214 kb on + strand, within MIT1002_00187at 204.214 kb on + strand, within MIT1002_00187at 204.214 kb on + strand, within MIT1002_00187at 204.220 kb on - strand, within MIT1002_00187at 204.222 kb on - strand, within MIT1002_00187at 204.222 kb on - strand, within MIT1002_00187at 204.222 kb on - strand, within MIT1002_00187at 204.222 kb on - strand, within MIT1002_00187at 204.240 kb on - strand, within MIT1002_00187at 204.240 kb on - strand, within MIT1002_00187at 204.244 kb on + strand, within MIT1002_00187at 204.272 kb on - strand, within MIT1002_00187at 204.310 kb on - strand, within MIT1002_00187at 204.325 kb on - strand, within MIT1002_00187at 204.350 kb on + strand, within MIT1002_00187at 204.357 kb on + strand, within MIT1002_00187at 204.357 kb on + strand, within MIT1002_00187at 204.358 kb on - strand, within MIT1002_00187at 204.627 kb on + strandat 204.639 kb on - strandat 204.659 kb on + strandat 204.666 kb on - strandat 204.698 kb on - strandat 204.698 kb on - strandat 204.715 kb on + strandat 204.715 kb on + strandat 204.723 kb on - strandat 204.843 kb on + strand, within MIT1002_00188at 204.843 kb on + strand, within MIT1002_00188at 204.851 kb on - strand, within MIT1002_00188at 204.851 kb on - strand, within MIT1002_00188at 204.893 kb on + strand, within MIT1002_00188at 204.901 kb on - strand, within MIT1002_00188at 204.918 kb on - strand, within MIT1002_00188at 204.965 kb on - strand, within MIT1002_00188at 205.061 kb on + strand, within MIT1002_00188at 205.096 kb on - strand, within MIT1002_00188at 205.127 kb on + strand, within MIT1002_00188at 205.127 kb on + strand, within MIT1002_00188at 205.135 kb on - strand, within MIT1002_00188at 205.135 kb on - strand, within MIT1002_00188at 205.203 kb on + strand, within MIT1002_00188at 205.240 kb on + strand, within MIT1002_00188at 205.240 kb on + strand, within MIT1002_00188at 205.240 kb on - strand, within MIT1002_00188at 205.245 kb on + strand, within MIT1002_00188at 205.305 kb on + strand, within MIT1002_00188at 205.323 kb on - strand, within MIT1002_00188at 205.356 kb on - strand, within MIT1002_00188

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 4
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202,458 + MIT1002_00186 0.33 -3.4
202,462 - MIT1002_00186 0.33 -1.3
202,505 + MIT1002_00186 0.38 -0.7
202,538 - MIT1002_00186 0.41 -1.9
202,540 + MIT1002_00186 0.41 -0.5
202,560 - MIT1002_00186 0.43 -1.4
202,605 - MIT1002_00186 0.48 -2.1
202,616 + MIT1002_00186 0.49 -0.8
202,709 + MIT1002_00186 0.58 +1.2
202,709 + MIT1002_00186 0.58 +2.5
202,717 - MIT1002_00186 0.59 -2.2
202,746 - MIT1002_00186 0.62 -2.2
202,763 - MIT1002_00186 0.63 -0.5
202,768 - MIT1002_00186 0.64 -2.9
202,776 - MIT1002_00186 0.65 -1.3
202,807 - MIT1002_00186 0.68 -4.0
202,807 - MIT1002_00186 0.68 -2.1
202,845 - MIT1002_00186 0.72 -1.1
202,895 + MIT1002_00186 0.77 -1.0
202,895 + MIT1002_00186 0.77 -3.4
202,903 - MIT1002_00186 0.77 -0.9
202,903 - MIT1002_00186 0.77 -2.6
202,940 + MIT1002_00186 0.81 -1.2
202,986 - MIT1002_00186 0.86 -3.2
203,047 + -1.9
203,055 - -0.2
203,055 - -2.2
203,055 - -0.7
203,055 - -1.7
203,068 + +0.6
203,068 + -2.0
203,068 + -0.2
203,068 + -2.6
203,076 - -1.6
203,076 - -3.0
203,076 - -1.0
203,235 - -0.2
203,265 + +0.0
203,292 + +0.2
203,321 - -0.2
203,358 - +0.1
203,509 + -1.6
203,531 + -1.8
203,531 + -4.7
203,539 + -3.0
203,544 + -2.8
203,614 - MIT1002_00187 0.15 -0.9
203,634 + MIT1002_00187 0.17 -3.2
203,634 + MIT1002_00187 0.17 -1.3
203,634 + MIT1002_00187 0.17 -0.1
203,634 + MIT1002_00187 0.17 -1.1
203,639 + MIT1002_00187 0.18 -1.1
203,642 - MIT1002_00187 0.18 -4.2
203,642 - MIT1002_00187 0.18 -0.3
203,642 - MIT1002_00187 0.18 -1.7
203,644 + MIT1002_00187 0.18 -1.2
203,647 - MIT1002_00187 0.19 -1.9
203,689 - MIT1002_00187 0.23 -1.4
203,720 + MIT1002_00187 0.26 -0.8
203,720 + MIT1002_00187 0.26 +0.1
203,725 + MIT1002_00187 0.26 -2.9
203,728 - MIT1002_00187 0.27 -3.0
203,730 + MIT1002_00187 0.27 -2.5
203,730 + MIT1002_00187 0.27 -2.1
203,730 + MIT1002_00187 0.27 +0.0
203,738 - MIT1002_00187 0.28 -0.2
203,738 - MIT1002_00187 0.28 -1.2
203,738 - MIT1002_00187 0.28 -2.5
203,738 - MIT1002_00187 0.28 -2.2
203,771 - MIT1002_00187 0.31 -1.6
203,798 + MIT1002_00187 0.33 -0.6
203,806 - MIT1002_00187 0.34 +0.1
203,827 - MIT1002_00187 0.36 -1.1
203,858 - MIT1002_00187 0.39 -0.8
203,868 - MIT1002_00187 0.40 -0.4
203,871 + MIT1002_00187 0.41 -1.4
203,980 + MIT1002_00187 0.51 -1.3
204,034 - MIT1002_00187 0.57 -1.5
204,034 - MIT1002_00187 0.57 -0.8
204,165 - MIT1002_00187 0.69 -1.6
204,195 + MIT1002_00187 0.72 -0.7
204,202 - MIT1002_00187 0.73 -0.5
204,214 + MIT1002_00187 0.74 -1.5
204,214 + MIT1002_00187 0.74 -0.6
204,214 + MIT1002_00187 0.74 +2.0
204,214 + MIT1002_00187 0.74 -0.9
204,220 - MIT1002_00187 0.75 -0.9
204,222 - MIT1002_00187 0.75 -1.1
204,222 - MIT1002_00187 0.75 -0.7
204,222 - MIT1002_00187 0.75 +0.2
204,222 - MIT1002_00187 0.75 -1.5
204,240 - MIT1002_00187 0.77 -1.5
204,240 - MIT1002_00187 0.77 -0.1
204,244 + MIT1002_00187 0.77 -0.5
204,272 - MIT1002_00187 0.80 -1.6
204,310 - MIT1002_00187 0.84 -0.5
204,325 - MIT1002_00187 0.85 -1.2
204,350 + MIT1002_00187 0.88 -1.6
204,357 + MIT1002_00187 0.88 -0.8
204,357 + MIT1002_00187 0.88 -1.6
204,358 - MIT1002_00187 0.88 -0.5
204,627 + +0.3
204,639 - -3.4
204,659 + -5.2
204,666 - -3.3
204,698 - -4.3
204,698 - -3.1
204,715 + -4.3
204,715 + -1.6
204,723 - -5.0
204,843 + MIT1002_00188 0.18 -3.1
204,843 + MIT1002_00188 0.18 -4.8
204,851 - MIT1002_00188 0.19 -4.1
204,851 - MIT1002_00188 0.19 -5.6
204,893 + MIT1002_00188 0.23 -3.4
204,901 - MIT1002_00188 0.24 -1.7
204,918 - MIT1002_00188 0.25 -2.1
204,965 - MIT1002_00188 0.30 -3.6
205,061 + MIT1002_00188 0.39 -4.5
205,096 - MIT1002_00188 0.42 -5.7
205,127 + MIT1002_00188 0.45 -3.4
205,127 + MIT1002_00188 0.45 -3.6
205,135 - MIT1002_00188 0.46 -5.2
205,135 - MIT1002_00188 0.46 -2.0
205,203 + MIT1002_00188 0.52 -1.0
205,240 + MIT1002_00188 0.56 -2.2
205,240 + MIT1002_00188 0.56 -5.3
205,240 - MIT1002_00188 0.56 -4.7
205,245 + MIT1002_00188 0.56 -3.0
205,305 + MIT1002_00188 0.62 -6.4
205,323 - MIT1002_00188 0.64 -6.0
205,356 - MIT1002_00188 0.67 -2.7

Or see this region's nucleotide sequence