Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00177 and MIT1002_00178 are separated by 64 nucleotides MIT1002_00178 and MIT1002_00179 are separated by 203 nucleotides MIT1002_00179 and MIT1002_00180 are separated by 344 nucleotides
MIT1002_00177: MIT1002_00177 - Heat shock protein 70, at 191,386 to 192,888
_00177
MIT1002_00178: MIT1002_00178 - hypothetical protein, at 192,953 to 193,120
_00178
MIT1002_00179: MIT1002_00179 - Excinuclease ABC subunit A, at 193,324 to 196,155
_00179
MIT1002_00180: MIT1002_00180 - Inner membrane transport protein YajR, at 196,500 to 197,837
_00180
Position (kb) 193
194
195
196
197 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 192.355 kb on - strand, within MIT1002_00177 at 192.406 kb on + strand, within MIT1002_00177 at 192.413 kb on + strand, within MIT1002_00177 at 192.414 kb on - strand, within MIT1002_00177 at 192.451 kb on + strand, within MIT1002_00177 at 192.451 kb on + strand, within MIT1002_00177 at 192.452 kb on - strand, within MIT1002_00177 at 192.476 kb on - strand, within MIT1002_00177 at 192.554 kb on + strand, within MIT1002_00177 at 192.591 kb on + strand, within MIT1002_00177 at 192.754 kb on + strand at 192.819 kb on - strand at 192.824 kb on - strand at 192.836 kb on - strand at 192.856 kb on + strand at 192.864 kb on - strand at 192.864 kb on - strand at 192.906 kb on + strand at 192.920 kb on - strand at 192.926 kb on - strand at 192.943 kb on - strand at 192.995 kb on + strand, within MIT1002_00178 at 193.003 kb on - strand, within MIT1002_00178 at 193.007 kb on + strand, within MIT1002_00178 at 193.022 kb on - strand, within MIT1002_00178 at 193.057 kb on + strand, within MIT1002_00178 at 193.070 kb on - strand, within MIT1002_00178 at 193.082 kb on - strand, within MIT1002_00178 at 193.097 kb on + strand, within MIT1002_00178 at 193.241 kb on - strand at 193.330 kb on - strand at 193.394 kb on + strand at 193.411 kb on + strand at 193.411 kb on + strand at 193.414 kb on - strand at 193.439 kb on + strand at 193.458 kb on + strand at 193.466 kb on + strand at 193.474 kb on - strand at 193.476 kb on + strand at 193.476 kb on + strand at 193.484 kb on - strand at 193.484 kb on - strand at 193.484 kb on - strand at 193.513 kb on - strand at 193.534 kb on - strand at 193.538 kb on + strand at 193.546 kb on - strand at 193.546 kb on - strand at 193.548 kb on + strand at 193.556 kb on - strand at 193.599 kb on - strand at 193.658 kb on - strand, within MIT1002_00179 at 193.678 kb on + strand, within MIT1002_00179 at 193.713 kb on + strand, within MIT1002_00179 at 193.713 kb on + strand, within MIT1002_00179 at 193.720 kb on + strand, within MIT1002_00179 at 193.721 kb on - strand, within MIT1002_00179 at 193.721 kb on - strand, within MIT1002_00179 at 193.819 kb on - strand, within MIT1002_00179 at 193.840 kb on + strand, within MIT1002_00179 at 193.884 kb on - strand, within MIT1002_00179 at 193.991 kb on + strand, within MIT1002_00179 at 194.054 kb on + strand, within MIT1002_00179 at 194.115 kb on + strand, within MIT1002_00179 at 194.115 kb on + strand, within MIT1002_00179 at 194.115 kb on + strand, within MIT1002_00179 at 194.115 kb on + strand, within MIT1002_00179 at 194.115 kb on + strand, within MIT1002_00179 at 194.123 kb on - strand, within MIT1002_00179 at 194.123 kb on - strand, within MIT1002_00179 at 194.162 kb on + strand, within MIT1002_00179 at 194.206 kb on + strand, within MIT1002_00179 at 194.230 kb on + strand, within MIT1002_00179 at 194.248 kb on + strand, within MIT1002_00179 at 194.248 kb on + strand, within MIT1002_00179 at 194.256 kb on - strand, within MIT1002_00179 at 194.256 kb on - strand, within MIT1002_00179 at 194.396 kb on + strand, within MIT1002_00179 at 194.488 kb on + strand, within MIT1002_00179 at 194.537 kb on + strand, within MIT1002_00179 at 194.537 kb on + strand, within MIT1002_00179 at 194.537 kb on + strand, within MIT1002_00179 at 194.545 kb on - strand, within MIT1002_00179 at 194.545 kb on - strand, within MIT1002_00179 at 194.545 kb on - strand, within MIT1002_00179 at 194.545 kb on - strand, within MIT1002_00179 at 194.572 kb on - strand, within MIT1002_00179 at 194.595 kb on + strand, within MIT1002_00179 at 194.605 kb on + strand, within MIT1002_00179 at 194.638 kb on + strand, within MIT1002_00179 at 194.638 kb on + strand, within MIT1002_00179 at 194.646 kb on - strand, within MIT1002_00179 at 194.646 kb on - strand, within MIT1002_00179 at 194.646 kb on - strand, within MIT1002_00179 at 194.646 kb on - strand, within MIT1002_00179 at 194.646 kb on - strand, within MIT1002_00179 at 194.682 kb on - strand, within MIT1002_00179 at 194.689 kb on - strand, within MIT1002_00179 at 194.698 kb on + strand, within MIT1002_00179 at 194.705 kb on - strand, within MIT1002_00179 at 194.800 kb on + strand, within MIT1002_00179 at 194.842 kb on - strand, within MIT1002_00179 at 194.916 kb on + strand, within MIT1002_00179 at 194.932 kb on - strand, within MIT1002_00179 at 194.976 kb on - strand, within MIT1002_00179 at 195.029 kb on - strand, within MIT1002_00179 at 195.030 kb on + strand, within MIT1002_00179 at 195.180 kb on + strand, within MIT1002_00179 at 195.185 kb on - strand, within MIT1002_00179 at 195.265 kb on + strand, within MIT1002_00179 at 195.305 kb on - strand, within MIT1002_00179 at 195.307 kb on - strand, within MIT1002_00179 at 195.324 kb on + strand, within MIT1002_00179 at 195.332 kb on + strand, within MIT1002_00179 at 195.362 kb on + strand, within MIT1002_00179 at 195.372 kb on + strand, within MIT1002_00179 at 195.387 kb on - strand, within MIT1002_00179 at 195.478 kb on + strand, within MIT1002_00179 at 195.478 kb on + strand, within MIT1002_00179 at 195.485 kb on - strand, within MIT1002_00179 at 195.503 kb on + strand, within MIT1002_00179 at 195.503 kb on + strand, within MIT1002_00179 at 195.513 kb on + strand, within MIT1002_00179 at 195.539 kb on - strand, within MIT1002_00179 at 195.539 kb on - strand, within MIT1002_00179 at 195.539 kb on - strand, within MIT1002_00179 at 195.662 kb on + strand, within MIT1002_00179 at 195.662 kb on + strand, within MIT1002_00179 at 195.662 kb on + strand, within MIT1002_00179 at 195.662 kb on + strand, within MIT1002_00179 at 195.670 kb on - strand, within MIT1002_00179 at 195.670 kb on - strand, within MIT1002_00179 at 195.733 kb on + strand, within MIT1002_00179 at 195.733 kb on + strand, within MIT1002_00179 at 195.741 kb on - strand, within MIT1002_00179 at 195.741 kb on - strand, within MIT1002_00179 at 195.741 kb on - strand, within MIT1002_00179 at 195.789 kb on + strand, within MIT1002_00179 at 195.789 kb on + strand, within MIT1002_00179 at 195.789 kb on + strand, within MIT1002_00179 at 195.789 kb on + strand, within MIT1002_00179 at 195.789 kb on + strand, within MIT1002_00179 at 195.797 kb on - strand, within MIT1002_00179 at 195.797 kb on - strand, within MIT1002_00179 at 195.797 kb on - strand, within MIT1002_00179 at 195.797 kb on - strand, within MIT1002_00179 at 195.797 kb on - strand, within MIT1002_00179 at 195.869 kb on + strand, within MIT1002_00179 at 195.869 kb on + strand, within MIT1002_00179 at 195.917 kb on + strand at 195.923 kb on + strand at 195.981 kb on - strand at 196.003 kb on + strand at 196.011 kb on - strand at 196.123 kb on + strand at 196.231 kb on - strand at 196.259 kb on + strand at 196.267 kb on - strand at 196.335 kb on - strand at 196.357 kb on + strand at 196.357 kb on + strand at 196.365 kb on - strand at 196.395 kb on + strand at 196.400 kb on + strand at 196.400 kb on + strand at 196.423 kb on - strand at 196.441 kb on + strand at 196.449 kb on - strand at 196.568 kb on + strand at 196.568 kb on + strand at 196.576 kb on - strand at 196.576 kb on - strand at 196.576 kb on - strand at 196.604 kb on + strand at 196.612 kb on - strand at 196.630 kb on + strand at 196.656 kb on + strand, within MIT1002_00180 at 196.657 kb on + strand, within MIT1002_00180 at 196.659 kb on - strand, within MIT1002_00180 at 196.659 kb on - strand, within MIT1002_00180 at 196.661 kb on + strand, within MIT1002_00180 at 196.743 kb on - strand, within MIT1002_00180 at 196.767 kb on - strand, within MIT1002_00180 at 196.789 kb on - strand, within MIT1002_00180 at 196.791 kb on - strand, within MIT1002_00180 at 196.820 kb on - strand, within MIT1002_00180 at 196.835 kb on - strand, within MIT1002_00180 at 196.911 kb on + strand, within MIT1002_00180 at 197.050 kb on + strand, within MIT1002_00180 at 197.050 kb on + strand, within MIT1002_00180 at 197.055 kb on + strand, within MIT1002_00180 at 197.063 kb on - strand, within MIT1002_00180 at 197.105 kb on + strand, within MIT1002_00180 at 197.148 kb on + strand, within MIT1002_00180
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 4 remove 192,355 - MIT1002_00177 0.64 -0.7 192,406 + MIT1002_00177 0.68 -1.5 192,413 + MIT1002_00177 0.68 -0.5 192,414 - MIT1002_00177 0.68 -0.2 192,451 + MIT1002_00177 0.71 -2.5 192,451 + MIT1002_00177 0.71 -0.1 192,452 - MIT1002_00177 0.71 -0.2 192,476 - MIT1002_00177 0.73 +1.6 192,554 + MIT1002_00177 0.78 -0.7 192,591 + MIT1002_00177 0.80 +0.7 192,754 + +0.1 192,819 - +0.4 192,824 - +1.1 192,836 - +0.5 192,856 + +0.7 192,864 - +1.1 192,864 - +1.7 192,906 + -0.1 192,920 - +1.8 192,926 - -1.0 192,943 - -1.7 192,995 + MIT1002_00178 0.25 -0.5 193,003 - MIT1002_00178 0.30 -1.4 193,007 + MIT1002_00178 0.32 +0.0 193,022 - MIT1002_00178 0.41 +0.2 193,057 + MIT1002_00178 0.62 -0.1 193,070 - MIT1002_00178 0.70 +0.5 193,082 - MIT1002_00178 0.77 +0.2 193,097 + MIT1002_00178 0.86 -0.8 193,241 - -1.2 193,330 - +2.1 193,394 + +0.2 193,411 + -1.2 193,411 + -1.3 193,414 - -0.6 193,439 + +1.0 193,458 + +0.5 193,466 + -0.5 193,474 - -0.2 193,476 + -2.7 193,476 + +0.2 193,484 - -0.1 193,484 - -0.1 193,484 - +0.1 193,513 - -0.8 193,534 - +1.4 193,538 + -0.6 193,546 - +0.4 193,546 - -2.1 193,548 + -0.2 193,556 - +0.3 193,599 - +0.5 193,658 - MIT1002_00179 0.12 +0.1 193,678 + MIT1002_00179 0.12 -0.2 193,713 + MIT1002_00179 0.14 +2.1 193,713 + MIT1002_00179 0.14 +0.4 193,720 + MIT1002_00179 0.14 +0.3 193,721 - MIT1002_00179 0.14 +0.8 193,721 - MIT1002_00179 0.14 +0.9 193,819 - MIT1002_00179 0.17 -1.4 193,840 + MIT1002_00179 0.18 +0.1 193,884 - MIT1002_00179 0.20 -1.2 193,991 + MIT1002_00179 0.24 -0.1 194,054 + MIT1002_00179 0.26 +0.0 194,115 + MIT1002_00179 0.28 +0.5 194,115 + MIT1002_00179 0.28 -1.7 194,115 + MIT1002_00179 0.28 -1.2 194,115 + MIT1002_00179 0.28 -1.0 194,115 + MIT1002_00179 0.28 -2.3 194,123 - MIT1002_00179 0.28 +1.5 194,123 - MIT1002_00179 0.28 -1.7 194,162 + MIT1002_00179 0.30 -2.2 194,206 + MIT1002_00179 0.31 +0.5 194,230 + MIT1002_00179 0.32 -0.2 194,248 + MIT1002_00179 0.33 +1.3 194,248 + MIT1002_00179 0.33 +2.3 194,256 - MIT1002_00179 0.33 -1.2 194,256 - MIT1002_00179 0.33 +0.8 194,396 + MIT1002_00179 0.38 -0.3 194,488 + MIT1002_00179 0.41 +0.9 194,537 + MIT1002_00179 0.43 +0.9 194,537 + MIT1002_00179 0.43 +1.5 194,537 + MIT1002_00179 0.43 +1.8 194,545 - MIT1002_00179 0.43 -0.3 194,545 - MIT1002_00179 0.43 -0.9 194,545 - MIT1002_00179 0.43 -2.3 194,545 - MIT1002_00179 0.43 -0.2 194,572 - MIT1002_00179 0.44 -0.8 194,595 + MIT1002_00179 0.45 +0.7 194,605 + MIT1002_00179 0.45 -1.0 194,638 + MIT1002_00179 0.46 -0.5 194,638 + MIT1002_00179 0.46 +3.1 194,646 - MIT1002_00179 0.47 +0.1 194,646 - MIT1002_00179 0.47 -2.7 194,646 - MIT1002_00179 0.47 +0.3 194,646 - MIT1002_00179 0.47 -0.2 194,646 - MIT1002_00179 0.47 +0.3 194,682 - MIT1002_00179 0.48 -0.1 194,689 - MIT1002_00179 0.48 -0.9 194,698 + MIT1002_00179 0.49 -1.8 194,705 - MIT1002_00179 0.49 +0.3 194,800 + MIT1002_00179 0.52 -1.0 194,842 - MIT1002_00179 0.54 -0.2 194,916 + MIT1002_00179 0.56 -1.5 194,932 - MIT1002_00179 0.57 -0.7 194,976 - MIT1002_00179 0.58 +0.5 195,029 - MIT1002_00179 0.60 -0.2 195,030 + MIT1002_00179 0.60 -0.2 195,180 + MIT1002_00179 0.66 -0.0 195,185 - MIT1002_00179 0.66 +1.4 195,265 + MIT1002_00179 0.69 -0.1 195,305 - MIT1002_00179 0.70 -3.6 195,307 - MIT1002_00179 0.70 -0.1 195,324 + MIT1002_00179 0.71 -0.1 195,332 + MIT1002_00179 0.71 +1.2 195,362 + MIT1002_00179 0.72 -1.2 195,372 + MIT1002_00179 0.72 +2.4 195,387 - MIT1002_00179 0.73 +0.5 195,478 + MIT1002_00179 0.76 -0.2 195,478 + MIT1002_00179 0.76 -1.1 195,485 - MIT1002_00179 0.76 +0.5 195,503 + MIT1002_00179 0.77 +0.4 195,503 + MIT1002_00179 0.77 +1.8 195,513 + MIT1002_00179 0.77 -1.9 195,539 - MIT1002_00179 0.78 -2.8 195,539 - MIT1002_00179 0.78 -0.2 195,539 - MIT1002_00179 0.78 -0.2 195,662 + MIT1002_00179 0.83 +0.8 195,662 + MIT1002_00179 0.83 +2.0 195,662 + MIT1002_00179 0.83 +1.2 195,662 + MIT1002_00179 0.83 -0.3 195,670 - MIT1002_00179 0.83 -0.0 195,670 - MIT1002_00179 0.83 -0.1 195,733 + MIT1002_00179 0.85 -1.0 195,733 + MIT1002_00179 0.85 -0.3 195,741 - MIT1002_00179 0.85 +1.0 195,741 - MIT1002_00179 0.85 -0.5 195,741 - MIT1002_00179 0.85 +1.5 195,789 + MIT1002_00179 0.87 +2.4 195,789 + MIT1002_00179 0.87 +0.3 195,789 + MIT1002_00179 0.87 -0.8 195,789 + MIT1002_00179 0.87 +0.1 195,789 + MIT1002_00179 0.87 -0.2 195,797 - MIT1002_00179 0.87 +0.1 195,797 - MIT1002_00179 0.87 -2.9 195,797 - MIT1002_00179 0.87 -0.4 195,797 - MIT1002_00179 0.87 -0.7 195,797 - MIT1002_00179 0.87 +1.2 195,869 + MIT1002_00179 0.90 +1.0 195,869 + MIT1002_00179 0.90 -0.2 195,917 + -2.0 195,923 + -0.5 195,981 - -0.1 196,003 + -0.2 196,011 - -0.6 196,123 + -2.1 196,231 - -2.3 196,259 + -0.3 196,267 - -0.5 196,335 - -1.3 196,357 + +1.5 196,357 + +0.6 196,365 - +0.0 196,395 + -1.7 196,400 + +1.4 196,400 + +0.1 196,423 - -0.1 196,441 + -0.3 196,449 - -1.0 196,568 + -1.4 196,568 + -1.2 196,576 - -0.5 196,576 - -2.9 196,576 - -1.5 196,604 + -1.2 196,612 - -0.6 196,630 + -1.8 196,656 + MIT1002_00180 0.12 -2.5 196,657 + MIT1002_00180 0.12 +0.7 196,659 - MIT1002_00180 0.12 -1.0 196,659 - MIT1002_00180 0.12 -0.7 196,661 + MIT1002_00180 0.12 +0.5 196,743 - MIT1002_00180 0.18 -3.2 196,767 - MIT1002_00180 0.20 +2.3 196,789 - MIT1002_00180 0.22 -1.5 196,791 - MIT1002_00180 0.22 -0.9 196,820 - MIT1002_00180 0.24 -0.2 196,835 - MIT1002_00180 0.25 -1.5 196,911 + MIT1002_00180 0.31 +1.6 197,050 + MIT1002_00180 0.41 -0.5 197,050 + MIT1002_00180 0.41 -2.5 197,055 + MIT1002_00180 0.41 -0.2 197,063 - MIT1002_00180 0.42 -0.9 197,105 + MIT1002_00180 0.45 -0.9 197,148 + MIT1002_00180 0.48 -0.5
Or see this region's nucleotide sequence