Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00072 and MIT1002_00073 are separated by 103 nucleotides MIT1002_00073 and MIT1002_00074 are separated by 264 nucleotides MIT1002_00074 and MIT1002_00075 are separated by 17 nucleotides
MIT1002_00072: MIT1002_00072 - Bacteriophytochrome cph2, at 76,955 to 79,555
_00072
MIT1002_00073: MIT1002_00073 - Cytochrome c5, at 79,659 to 80,066
_00073
MIT1002_00074: MIT1002_00074 - tRNA-Arg, at 80,331 to 80,407
_00074
MIT1002_00075: MIT1002_00075 - putative DNA-binding transcriptional regulator, at 80,425 to 81,618
_00075
Position (kb) 79
80
81 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 78.669 kb on - strand, within MIT1002_00072 at 78.768 kb on - strand, within MIT1002_00072 at 78.792 kb on + strand, within MIT1002_00072 at 78.926 kb on + strand, within MIT1002_00072 at 79.010 kb on + strand, within MIT1002_00072 at 79.040 kb on + strand, within MIT1002_00072 at 79.048 kb on - strand, within MIT1002_00072 at 79.048 kb on - strand, within MIT1002_00072 at 79.075 kb on - strand, within MIT1002_00072 at 79.077 kb on - strand, within MIT1002_00072 at 79.084 kb on - strand, within MIT1002_00072 at 79.117 kb on + strand, within MIT1002_00072 at 79.117 kb on + strand, within MIT1002_00072 at 79.144 kb on - strand, within MIT1002_00072 at 79.213 kb on + strand, within MIT1002_00072 at 79.395 kb on + strand at 79.423 kb on + strand at 79.423 kb on + strand at 79.431 kb on - strand at 79.447 kb on + strand at 79.463 kb on - strand at 79.498 kb on + strand at 79.506 kb on - strand at 79.721 kb on - strand, within MIT1002_00073 at 79.742 kb on + strand, within MIT1002_00073 at 79.742 kb on + strand, within MIT1002_00073 at 79.798 kb on - strand, within MIT1002_00073 at 79.903 kb on - strand, within MIT1002_00073 at 80.116 kb on - strand at 80.166 kb on + strand at 80.230 kb on - strand at 80.235 kb on - strand at 80.257 kb on + strand at 80.259 kb on + strand at 80.301 kb on + strand at 80.351 kb on - strand, within MIT1002_00074 at 80.351 kb on - strand, within MIT1002_00074 at 80.365 kb on + strand, within MIT1002_00074 at 80.368 kb on - strand, within MIT1002_00074 at 80.376 kb on + strand, within MIT1002_00074 at 80.376 kb on + strand, within MIT1002_00074 at 80.400 kb on - strand at 80.400 kb on - strand at 80.432 kb on + strand at 80.441 kb on - strand at 80.442 kb on + strand at 80.456 kb on + strand at 80.512 kb on + strand at 80.578 kb on - strand, within MIT1002_00075 at 80.578 kb on - strand, within MIT1002_00075 at 80.578 kb on - strand, within MIT1002_00075 at 80.659 kb on + strand, within MIT1002_00075 at 80.659 kb on + strand, within MIT1002_00075 at 80.665 kb on - strand, within MIT1002_00075 at 80.735 kb on - strand, within MIT1002_00075 at 80.735 kb on - strand, within MIT1002_00075 at 80.743 kb on - strand, within MIT1002_00075 at 80.765 kb on + strand, within MIT1002_00075 at 80.765 kb on + strand, within MIT1002_00075 at 80.773 kb on - strand, within MIT1002_00075 at 80.783 kb on - strand, within MIT1002_00075 at 80.801 kb on - strand, within MIT1002_00075 at 80.801 kb on - strand, within MIT1002_00075 at 80.809 kb on - strand, within MIT1002_00075 at 80.853 kb on + strand, within MIT1002_00075 at 80.976 kb on + strand, within MIT1002_00075 at 80.976 kb on + strand, within MIT1002_00075 at 80.976 kb on + strand, within MIT1002_00075 at 80.984 kb on - strand, within MIT1002_00075 at 80.984 kb on - strand, within MIT1002_00075 at 80.984 kb on - strand, within MIT1002_00075 at 81.002 kb on - strand, within MIT1002_00075 at 81.052 kb on + strand, within MIT1002_00075 at 81.060 kb on + strand, within MIT1002_00075
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 4 remove 78,669 - MIT1002_00072 0.66 -2.2 78,768 - MIT1002_00072 0.70 +0.3 78,792 + MIT1002_00072 0.71 +0.2 78,926 + MIT1002_00072 0.76 +0.3 79,010 + MIT1002_00072 0.79 -0.3 79,040 + MIT1002_00072 0.80 +1.5 79,048 - MIT1002_00072 0.80 +1.1 79,048 - MIT1002_00072 0.80 -0.4 79,075 - MIT1002_00072 0.82 -0.6 79,077 - MIT1002_00072 0.82 -0.3 79,084 - MIT1002_00072 0.82 +0.8 79,117 + MIT1002_00072 0.83 +0.1 79,117 + MIT1002_00072 0.83 +1.9 79,144 - MIT1002_00072 0.84 -0.6 79,213 + MIT1002_00072 0.87 -0.7 79,395 + -0.4 79,423 + +0.4 79,423 + +0.6 79,431 - +0.6 79,447 + +0.9 79,463 - +0.1 79,498 + +1.3 79,506 - +0.9 79,721 - MIT1002_00073 0.15 -2.2 79,742 + MIT1002_00073 0.20 -0.5 79,742 + MIT1002_00073 0.20 -1.3 79,798 - MIT1002_00073 0.34 -2.7 79,903 - MIT1002_00073 0.60 -2.7 80,116 - +0.1 80,166 + +0.5 80,230 - +0.3 80,235 - -0.7 80,257 + -0.7 80,259 + -1.8 80,301 + -0.5 80,351 - MIT1002_00074 0.26 -1.9 80,351 - MIT1002_00074 0.26 -2.7 80,365 + MIT1002_00074 0.44 -2.9 80,368 - MIT1002_00074 0.48 -2.1 80,376 + MIT1002_00074 0.58 -1.5 80,376 + MIT1002_00074 0.58 -1.6 80,400 - -2.7 80,400 - -3.0 80,432 + -1.6 80,441 - -0.1 80,442 + +1.2 80,456 + +1.4 80,512 + -1.2 80,578 - MIT1002_00075 0.13 -1.2 80,578 - MIT1002_00075 0.13 +0.1 80,578 - MIT1002_00075 0.13 +0.3 80,659 + MIT1002_00075 0.20 +0.5 80,659 + MIT1002_00075 0.20 -0.5 80,665 - MIT1002_00075 0.20 -0.7 80,735 - MIT1002_00075 0.26 +0.2 80,735 - MIT1002_00075 0.26 -0.5 80,743 - MIT1002_00075 0.27 -0.3 80,765 + MIT1002_00075 0.28 +0.1 80,765 + MIT1002_00075 0.28 -0.6 80,773 - MIT1002_00075 0.29 -0.2 80,783 - MIT1002_00075 0.30 -0.6 80,801 - MIT1002_00075 0.31 +0.0 80,801 - MIT1002_00075 0.31 +1.3 80,809 - MIT1002_00075 0.32 +2.4 80,853 + MIT1002_00075 0.36 -2.0 80,976 + MIT1002_00075 0.46 -1.1 80,976 + MIT1002_00075 0.46 +0.5 80,976 + MIT1002_00075 0.46 -0.7 80,984 - MIT1002_00075 0.47 -0.7 80,984 - MIT1002_00075 0.47 +0.5 80,984 - MIT1002_00075 0.47 -0.5 81,002 - MIT1002_00075 0.48 +1.3 81,052 + MIT1002_00075 0.53 -0.7 81,060 + MIT1002_00075 0.53 +0.6
Or see this region's nucleotide sequence