Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04217

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_04215 and MIT1002_04216 are separated by 177 nucleotidesMIT1002_04216 and MIT1002_04217 overlap by 1 nucleotidesMIT1002_04217 and MIT1002_04218 overlap by 40 nucleotidesMIT1002_04218 and MIT1002_04219 overlap by 14 nucleotidesMIT1002_04219 and MIT1002_04220 are separated by 9 nucleotides MIT1002_04215: MIT1002_04215 - Bacteriophytochrome cph2, at 83,615 to 84,757 _04215 MIT1002_04216: MIT1002_04216 - CheW-like domain protein, at 84,935 to 85,450 _04216 MIT1002_04217: MIT1002_04217 - Chemotaxis protein methyltransferase, at 85,450 to 86,547 _04217 MIT1002_04218: MIT1002_04218 - hypothetical protein, at 86,508 to 86,780 _04218 MIT1002_04219: MIT1002_04219 - CheW-like domain protein, at 86,767 to 87,306 _04219 MIT1002_04220: MIT1002_04220 - Ribose and galactose chemoreceptor protein, at 87,316 to 88,779 _04220 Position (kb) 85 86 87Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 84.495 kb on + strand, within MIT1002_04215at 84.501 kb on - strand, within MIT1002_04215at 84.545 kb on + strand, within MIT1002_04215at 84.553 kb on - strand, within MIT1002_04215at 84.626 kb on - strand, within MIT1002_04215at 84.634 kb on - strand, within MIT1002_04215at 84.713 kb on - strandat 84.907 kb on - strandat 84.916 kb on + strandat 84.924 kb on - strandat 84.924 kb on - strandat 84.931 kb on - strandat 84.931 kb on - strandat 84.931 kb on - strandat 85.009 kb on + strand, within MIT1002_04216at 85.010 kb on + strand, within MIT1002_04216at 85.010 kb on + strand, within MIT1002_04216at 85.010 kb on + strand, within MIT1002_04216at 85.017 kb on - strand, within MIT1002_04216at 85.034 kb on - strand, within MIT1002_04216at 85.036 kb on + strand, within MIT1002_04216at 85.043 kb on - strand, within MIT1002_04216at 85.107 kb on + strand, within MIT1002_04216at 85.114 kb on + strand, within MIT1002_04216at 85.114 kb on + strand, within MIT1002_04216at 85.114 kb on + strand, within MIT1002_04216at 85.122 kb on - strand, within MIT1002_04216at 85.122 kb on - strand, within MIT1002_04216at 85.122 kb on - strand, within MIT1002_04216at 85.122 kb on - strand, within MIT1002_04216at 85.156 kb on - strand, within MIT1002_04216at 85.158 kb on + strand, within MIT1002_04216at 85.166 kb on - strand, within MIT1002_04216at 85.168 kb on + strand, within MIT1002_04216at 85.176 kb on - strand, within MIT1002_04216at 85.176 kb on - strand, within MIT1002_04216at 85.190 kb on + strand, within MIT1002_04216at 85.251 kb on + strand, within MIT1002_04216at 85.254 kb on - strand, within MIT1002_04216at 85.260 kb on + strand, within MIT1002_04216at 85.260 kb on + strand, within MIT1002_04216at 85.260 kb on + strand, within MIT1002_04216at 85.260 kb on + strand, within MIT1002_04216at 85.268 kb on - strand, within MIT1002_04216at 85.268 kb on - strand, within MIT1002_04216at 85.268 kb on - strand, within MIT1002_04216at 85.278 kb on - strand, within MIT1002_04216at 85.278 kb on - strand, within MIT1002_04216at 85.278 kb on - strand, within MIT1002_04216at 85.278 kb on - strand, within MIT1002_04216at 85.321 kb on + strand, within MIT1002_04216at 85.329 kb on - strand, within MIT1002_04216at 85.457 kb on - strandat 85.604 kb on + strand, within MIT1002_04217at 85.611 kb on + strand, within MIT1002_04217at 85.621 kb on + strand, within MIT1002_04217at 85.640 kb on + strand, within MIT1002_04217at 85.642 kb on + strand, within MIT1002_04217at 85.719 kb on + strand, within MIT1002_04217at 85.727 kb on + strand, within MIT1002_04217at 85.777 kb on + strand, within MIT1002_04217at 85.777 kb on + strand, within MIT1002_04217at 85.777 kb on + strand, within MIT1002_04217at 85.777 kb on + strand, within MIT1002_04217at 85.777 kb on + strand, within MIT1002_04217at 85.777 kb on + strand, within MIT1002_04217at 85.779 kb on + strand, within MIT1002_04217at 85.784 kb on - strand, within MIT1002_04217at 85.785 kb on - strand, within MIT1002_04217at 85.785 kb on - strand, within MIT1002_04217at 85.785 kb on - strand, within MIT1002_04217at 85.785 kb on - strand, within MIT1002_04217at 85.785 kb on - strand, within MIT1002_04217at 85.785 kb on - strand, within MIT1002_04217at 85.787 kb on + strand, within MIT1002_04217at 85.823 kb on - strand, within MIT1002_04217at 85.823 kb on - strand, within MIT1002_04217at 85.831 kb on - strand, within MIT1002_04217at 85.832 kb on + strand, within MIT1002_04217at 85.840 kb on - strand, within MIT1002_04217at 85.920 kb on + strand, within MIT1002_04217at 85.921 kb on - strand, within MIT1002_04217at 85.950 kb on + strand, within MIT1002_04217at 85.969 kb on - strand, within MIT1002_04217at 85.969 kb on - strand, within MIT1002_04217at 85.969 kb on - strand, within MIT1002_04217at 85.969 kb on - strand, within MIT1002_04217at 85.972 kb on - strand, within MIT1002_04217at 86.008 kb on - strand, within MIT1002_04217at 86.008 kb on - strand, within MIT1002_04217at 86.119 kb on - strand, within MIT1002_04217at 86.144 kb on - strand, within MIT1002_04217at 86.153 kb on + strand, within MIT1002_04217at 86.154 kb on + strand, within MIT1002_04217at 86.154 kb on + strand, within MIT1002_04217at 86.154 kb on + strand, within MIT1002_04217at 86.154 kb on + strand, within MIT1002_04217at 86.161 kb on - strand, within MIT1002_04217at 86.162 kb on - strand, within MIT1002_04217at 86.162 kb on - strand, within MIT1002_04217at 86.162 kb on - strand, within MIT1002_04217at 86.162 kb on - strand, within MIT1002_04217at 86.162 kb on - strand, within MIT1002_04217at 86.169 kb on + strand, within MIT1002_04217at 86.185 kb on + strand, within MIT1002_04217at 86.249 kb on + strand, within MIT1002_04217at 86.297 kb on + strand, within MIT1002_04217at 86.297 kb on + strand, within MIT1002_04217at 86.305 kb on - strand, within MIT1002_04217at 86.320 kb on + strand, within MIT1002_04217at 86.320 kb on + strand, within MIT1002_04217at 86.328 kb on - strand, within MIT1002_04217at 86.328 kb on - strand, within MIT1002_04217at 86.388 kb on + strand, within MIT1002_04217at 86.413 kb on + strand, within MIT1002_04217at 86.414 kb on + strand, within MIT1002_04217at 86.428 kb on - strand, within MIT1002_04217at 86.428 kb on - strand, within MIT1002_04217at 86.473 kb on + strandat 86.497 kb on + strandat 86.497 kb on + strandat 86.497 kb on + strandat 86.498 kb on + strandat 86.506 kb on - strandat 86.506 kb on - strandat 86.514 kb on + strandat 86.518 kb on - strandat 86.522 kb on - strandat 86.553 kb on + strand, within MIT1002_04218at 86.553 kb on + strand, within MIT1002_04218at 86.561 kb on + strand, within MIT1002_04218at 86.561 kb on - strand, within MIT1002_04218at 86.561 kb on - strand, within MIT1002_04218at 86.561 kb on - strand, within MIT1002_04218at 86.561 kb on - strand, within MIT1002_04218at 86.561 kb on - strand, within MIT1002_04218at 86.569 kb on - strand, within MIT1002_04218at 86.569 kb on - strand, within MIT1002_04218at 86.569 kb on - strand, within MIT1002_04218at 86.569 kb on - strand, within MIT1002_04218at 86.580 kb on + strand, within MIT1002_04218at 86.580 kb on + strand, within MIT1002_04218at 86.588 kb on - strand, within MIT1002_04218at 86.601 kb on + strand, within MIT1002_04218at 86.603 kb on + strand, within MIT1002_04218at 86.724 kb on - strand, within MIT1002_04218at 86.781 kb on + strandat 86.781 kb on + strandat 86.781 kb on + strandat 86.786 kb on + strandat 86.789 kb on - strandat 86.791 kb on + strandat 86.794 kb on - strandat 86.838 kb on + strand, within MIT1002_04219at 86.846 kb on - strand, within MIT1002_04219at 86.857 kb on - strand, within MIT1002_04219at 86.873 kb on + strand, within MIT1002_04219at 86.894 kb on + strand, within MIT1002_04219at 86.931 kb on - strand, within MIT1002_04219at 87.061 kb on - strand, within MIT1002_04219at 87.076 kb on + strand, within MIT1002_04219at 87.076 kb on + strand, within MIT1002_04219at 87.077 kb on + strand, within MIT1002_04219at 87.143 kb on - strand, within MIT1002_04219at 87.153 kb on - strand, within MIT1002_04219at 87.159 kb on - strand, within MIT1002_04219at 87.161 kb on - strand, within MIT1002_04219at 87.177 kb on + strand, within MIT1002_04219at 87.185 kb on - strand, within MIT1002_04219at 87.211 kb on + strand, within MIT1002_04219at 87.211 kb on + strand, within MIT1002_04219at 87.220 kb on - strand, within MIT1002_04219at 87.297 kb on + strandat 87.297 kb on + strandat 87.301 kb on + strandat 87.314 kb on - strandat 87.315 kb on - strandat 87.423 kb on + strandat 87.430 kb on + strandat 87.456 kb on - strandat 87.461 kb on + strandat 87.461 kb on + strandat 87.468 kb on + strand, within MIT1002_04220at 87.483 kb on + strand, within MIT1002_04220at 87.483 kb on - strand, within MIT1002_04220at 87.488 kb on + strand, within MIT1002_04220at 87.510 kb on - strand, within MIT1002_04220at 87.544 kb on + strand, within MIT1002_04220at 87.544 kb on + strand, within MIT1002_04220

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 3
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84,495 + MIT1002_04215 0.77 -2.9
84,501 - MIT1002_04215 0.78 -0.8
84,545 + MIT1002_04215 0.81 -0.7
84,553 - MIT1002_04215 0.82 +0.6
84,626 - MIT1002_04215 0.88 +0.1
84,634 - MIT1002_04215 0.89 +1.2
84,713 - -5.3
84,907 - +0.5
84,916 + +0.3
84,924 - -0.3
84,924 - +0.3
84,931 - +0.2
84,931 - -0.7
84,931 - +0.0
85,009 + MIT1002_04216 0.14 +0.2
85,010 + MIT1002_04216 0.15 -0.1
85,010 + MIT1002_04216 0.15 +0.1
85,010 + MIT1002_04216 0.15 -0.2
85,017 - MIT1002_04216 0.16 -1.2
85,034 - MIT1002_04216 0.19 -0.6
85,036 + MIT1002_04216 0.20 +1.2
85,043 - MIT1002_04216 0.21 -0.4
85,107 + MIT1002_04216 0.33 -0.9
85,114 + MIT1002_04216 0.35 -0.3
85,114 + MIT1002_04216 0.35 -1.1
85,114 + MIT1002_04216 0.35 +0.1
85,122 - MIT1002_04216 0.36 +1.2
85,122 - MIT1002_04216 0.36 -0.3
85,122 - MIT1002_04216 0.36 -1.3
85,122 - MIT1002_04216 0.36 +0.4
85,156 - MIT1002_04216 0.43 -1.7
85,158 + MIT1002_04216 0.43 -1.8
85,166 - MIT1002_04216 0.45 -0.1
85,168 + MIT1002_04216 0.45 -0.2
85,176 - MIT1002_04216 0.47 +1.0
85,176 - MIT1002_04216 0.47 +0.0
85,190 + MIT1002_04216 0.49 +1.0
85,251 + MIT1002_04216 0.61 +0.1
85,254 - MIT1002_04216 0.62 -0.5
85,260 + MIT1002_04216 0.63 +0.1
85,260 + MIT1002_04216 0.63 -1.3
85,260 + MIT1002_04216 0.63 +0.6
85,260 + MIT1002_04216 0.63 -0.3
85,268 - MIT1002_04216 0.65 -0.6
85,268 - MIT1002_04216 0.65 +0.3
85,268 - MIT1002_04216 0.65 +0.9
85,278 - MIT1002_04216 0.66 -1.0
85,278 - MIT1002_04216 0.66 -0.2
85,278 - MIT1002_04216 0.66 +0.1
85,278 - MIT1002_04216 0.66 -1.0
85,321 + MIT1002_04216 0.75 +1.0
85,329 - MIT1002_04216 0.76 -0.2
85,457 - +1.5
85,604 + MIT1002_04217 0.14 -2.3
85,611 + MIT1002_04217 0.15 +0.0
85,621 + MIT1002_04217 0.16 -1.1
85,640 + MIT1002_04217 0.17 -0.9
85,642 + MIT1002_04217 0.17 -1.0
85,719 + MIT1002_04217 0.24 -0.3
85,727 + MIT1002_04217 0.25 -1.8
85,777 + MIT1002_04217 0.30 -0.8
85,777 + MIT1002_04217 0.30 +1.2
85,777 + MIT1002_04217 0.30 -0.8
85,777 + MIT1002_04217 0.30 -0.2
85,777 + MIT1002_04217 0.30 -0.4
85,777 + MIT1002_04217 0.30 -0.9
85,779 + MIT1002_04217 0.30 -1.2
85,784 - MIT1002_04217 0.30 -0.7
85,785 - MIT1002_04217 0.31 -0.7
85,785 - MIT1002_04217 0.31 +0.7
85,785 - MIT1002_04217 0.31 +1.1
85,785 - MIT1002_04217 0.31 -1.7
85,785 - MIT1002_04217 0.31 +1.2
85,785 - MIT1002_04217 0.31 +0.9
85,787 + MIT1002_04217 0.31 -0.8
85,823 - MIT1002_04217 0.34 -0.9
85,823 - MIT1002_04217 0.34 +0.8
85,831 - MIT1002_04217 0.35 +1.1
85,832 + MIT1002_04217 0.35 +0.0
85,840 - MIT1002_04217 0.36 -0.2
85,920 + MIT1002_04217 0.43 -0.4
85,921 - MIT1002_04217 0.43 -0.7
85,950 + MIT1002_04217 0.46 -1.8
85,969 - MIT1002_04217 0.47 +1.7
85,969 - MIT1002_04217 0.47 +1.1
85,969 - MIT1002_04217 0.47 +1.5
85,969 - MIT1002_04217 0.47 -0.2
85,972 - MIT1002_04217 0.48 +0.4
86,008 - MIT1002_04217 0.51 -0.2
86,008 - MIT1002_04217 0.51 +1.0
86,119 - MIT1002_04217 0.61 +0.2
86,144 - MIT1002_04217 0.63 +0.3
86,153 + MIT1002_04217 0.64 +0.3
86,154 + MIT1002_04217 0.64 +1.1
86,154 + MIT1002_04217 0.64 +0.4
86,154 + MIT1002_04217 0.64 -1.2
86,154 + MIT1002_04217 0.64 +0.1
86,161 - MIT1002_04217 0.65 -1.7
86,162 - MIT1002_04217 0.65 -0.7
86,162 - MIT1002_04217 0.65 +0.2
86,162 - MIT1002_04217 0.65 -1.8
86,162 - MIT1002_04217 0.65 -0.4
86,162 - MIT1002_04217 0.65 +0.1
86,169 + MIT1002_04217 0.65 +0.7
86,185 + MIT1002_04217 0.67 +0.6
86,249 + MIT1002_04217 0.73 -0.1
86,297 + MIT1002_04217 0.77 +0.2
86,297 + MIT1002_04217 0.77 -1.0
86,305 - MIT1002_04217 0.78 +0.1
86,320 + MIT1002_04217 0.79 -1.8
86,320 + MIT1002_04217 0.79 -0.8
86,328 - MIT1002_04217 0.80 -0.4
86,328 - MIT1002_04217 0.80 +2.0
86,388 + MIT1002_04217 0.85 -0.9
86,413 + MIT1002_04217 0.88 +0.1
86,414 + MIT1002_04217 0.88 -3.4
86,428 - MIT1002_04217 0.89 -1.6
86,428 - MIT1002_04217 0.89 +0.3
86,473 + -1.7
86,497 + +0.0
86,497 + -1.0
86,497 + +0.5
86,498 + +1.0
86,506 - +0.5
86,506 - -0.7
86,514 + -0.2
86,518 - -1.3
86,522 - +0.7
86,553 + MIT1002_04218 0.16 -0.3
86,553 + MIT1002_04218 0.16 +1.4
86,561 + MIT1002_04218 0.19 +3.0
86,561 - MIT1002_04218 0.19 +0.2
86,561 - MIT1002_04218 0.19 +0.3
86,561 - MIT1002_04218 0.19 -2.4
86,561 - MIT1002_04218 0.19 +0.2
86,561 - MIT1002_04218 0.19 -0.2
86,569 - MIT1002_04218 0.22 -0.3
86,569 - MIT1002_04218 0.22 +0.9
86,569 - MIT1002_04218 0.22 +0.1
86,569 - MIT1002_04218 0.22 -1.0
86,580 + MIT1002_04218 0.26 -2.0
86,580 + MIT1002_04218 0.26 -1.0
86,588 - MIT1002_04218 0.29 +0.0
86,601 + MIT1002_04218 0.34 -1.1
86,603 + MIT1002_04218 0.35 +0.2
86,724 - MIT1002_04218 0.79 +0.4
86,781 + +1.8
86,781 + -0.8
86,781 + +0.9
86,786 + +0.8
86,789 - +0.5
86,791 + +0.4
86,794 - -2.4
86,838 + MIT1002_04219 0.13 -0.1
86,846 - MIT1002_04219 0.15 +0.5
86,857 - MIT1002_04219 0.17 +2.1
86,873 + MIT1002_04219 0.20 +0.2
86,894 + MIT1002_04219 0.24 +0.0
86,931 - MIT1002_04219 0.30 -1.4
87,061 - MIT1002_04219 0.54 +0.9
87,076 + MIT1002_04219 0.57 -2.8
87,076 + MIT1002_04219 0.57 -0.2
87,077 + MIT1002_04219 0.57 +0.1
87,143 - MIT1002_04219 0.70 +0.8
87,153 - MIT1002_04219 0.71 -0.1
87,159 - MIT1002_04219 0.73 +1.0
87,161 - MIT1002_04219 0.73 +0.1
87,177 + MIT1002_04219 0.76 +0.1
87,185 - MIT1002_04219 0.77 -0.4
87,211 + MIT1002_04219 0.82 +1.2
87,211 + MIT1002_04219 0.82 +0.2
87,220 - MIT1002_04219 0.84 +0.7
87,297 + +0.2
87,297 + +1.1
87,301 + -0.6
87,314 - +0.9
87,315 - +0.2
87,423 + +1.7
87,430 + -0.2
87,456 - -1.8
87,461 + -0.5
87,461 + -0.3
87,468 + MIT1002_04220 0.10 -0.2
87,483 + MIT1002_04220 0.11 +0.8
87,483 - MIT1002_04220 0.11 +0.3
87,488 + MIT1002_04220 0.12 -1.6
87,510 - MIT1002_04220 0.13 +0.5
87,544 + MIT1002_04220 0.16 -0.7
87,544 + MIT1002_04220 0.16 +0.3

Or see this region's nucleotide sequence