Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03435

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 3
3,837,223	-				-3.6
3,837,630	+		MIT1002_03434	0.76	-2.4
3,837,886	-				-2.8
3,837,888	-				+0.0
3,837,888	-				+1.0
3,837,896	-				+0.2
3,837,924	+				-0.6
3,837,934	+				+0.6
3,837,935	-				-0.2
3,837,959	+				+0.7
3,837,961	+				+1.1
3,837,961	+				-0.8
3,838,069	-		MIT1002_03435	0.11	+0.5
3,838,133	+		MIT1002_03435	0.16	-0.6
3,838,166	-		MIT1002_03435	0.18	-0.4
3,838,189	+		MIT1002_03435	0.20	+2.0
3,838,197	-		MIT1002_03435	0.20	+0.9
3,838,215	-		MIT1002_03435	0.22	-0.4
3,838,215	-		MIT1002_03435	0.22	-0.9
3,838,250	+		MIT1002_03435	0.24	-0.3
3,838,252	+		MIT1002_03435	0.24	-2.1
3,838,252	+		MIT1002_03435	0.24	-0.2
3,838,260	-		MIT1002_03435	0.25	-0.9
3,838,313	-		MIT1002_03435	0.29	-0.5
3,838,346	-		MIT1002_03435	0.31	-1.3
3,838,359	+		MIT1002_03435	0.32	-0.1
3,838,359	+		MIT1002_03435	0.32	+0.6
3,838,367	-		MIT1002_03435	0.32	-0.7
3,838,367	-		MIT1002_03435	0.32	-0.4
3,838,383	+		MIT1002_03435	0.33	+0.8
3,838,383	+		MIT1002_03435	0.33	-2.9
3,838,383	+		MIT1002_03435	0.33	-2.8
3,838,383	+		MIT1002_03435	0.33	+1.4
3,838,391	-		MIT1002_03435	0.34	+2.1
3,838,391	-		MIT1002_03435	0.34	+0.4
3,838,391	-		MIT1002_03435	0.34	+1.3
3,838,393	+		MIT1002_03435	0.34	-0.3
3,838,401	-		MIT1002_03435	0.35	+0.2
3,838,417	+		MIT1002_03435	0.36	+0.5
3,838,425	-		MIT1002_03435	0.36	+0.8
3,838,469	-		MIT1002_03435	0.40	-0.1
3,838,489	+		MIT1002_03435	0.41	+0.9
3,838,506	+		MIT1002_03435	0.42	-0.4
3,838,561	+		MIT1002_03435	0.46	+1.3
3,838,561	+		MIT1002_03435	0.46	-0.4
3,838,580	+		MIT1002_03435	0.47	+1.2
3,838,580	+		MIT1002_03435	0.47	+0.9
3,838,581	+		MIT1002_03435	0.47	-0.1
3,838,589	-		MIT1002_03435	0.48	+0.1
3,838,675	+		MIT1002_03435	0.54	+0.2
3,838,811	+		MIT1002_03435	0.64	-1.5
3,838,819	+		MIT1002_03435	0.64	+0.1
3,838,901	-		MIT1002_03435	0.70	+1.2
3,838,901	-		MIT1002_03435	0.70	-1.3
3,838,901	-		MIT1002_03435	0.70	+0.4
3,838,987	-		MIT1002_03435	0.76	+0.9
3,838,987	-		MIT1002_03435	0.76	-0.8
3,839,055	+		MIT1002_03435	0.81	-1.4
3,839,062	-		MIT1002_03435	0.82	-0.0
3,839,063	-		MIT1002_03435	0.82	+0.8
3,839,068	+		MIT1002_03435	0.82	+1.0
3,839,075	+		MIT1002_03435	0.82	+0.5
3,839,083	-		MIT1002_03435	0.83	+0.5
3,839,116	+		MIT1002_03435	0.85	+0.1
3,839,137	-		MIT1002_03435	0.87	-0.7
3,839,146	+		MIT1002_03435	0.87	+0.3
3,839,156	+		MIT1002_03435	0.88	+0.7
3,839,158	+		MIT1002_03435	0.88	-0.1
3,839,190	+				-1.1
3,839,265	-				+0.9
3,839,359	+				-0.5
3,839,367	-				+0.5
3,839,403	+				+0.5
3,839,411	-				+0.9
3,839,418	+				+0.3
3,839,418	+				-0.3
3,839,426	+				-0.4
3,839,476	-				+0.3
3,839,521	-				-1.0
3,839,621	+		MIT1002_03436	0.11	+0.5
3,839,686	-		MIT1002_03436	0.13	-0.3
3,839,711	+		MIT1002_03436	0.14	+0.7
3,839,721	+		MIT1002_03436	0.15	-0.3
3,839,721	+		MIT1002_03436	0.15	-0.5
3,839,721	+		MIT1002_03436	0.15	-0.5
3,839,721	+		MIT1002_03436	0.15	-2.2
3,839,721	+		MIT1002_03436	0.15	-0.5
3,839,721	+		MIT1002_03436	0.15	-0.3
3,839,724	+		MIT1002_03436	0.15	-0.5
3,839,729	-		MIT1002_03436	0.15	+0.1
3,839,729	-		MIT1002_03436	0.15	-0.3
3,839,729	-		MIT1002_03436	0.15	-1.4
3,839,764	-		MIT1002_03436	0.17	-1.6
3,839,781	+		MIT1002_03436	0.17	+0.2
3,839,789	-		MIT1002_03436	0.18	+0.9
3,839,789	-		MIT1002_03436	0.18	+0.8
3,839,831	-		MIT1002_03436	0.19	+0.7
3,839,837	-		MIT1002_03436	0.20	+1.2
3,839,939	+		MIT1002_03436	0.24	+1.6
3,839,944	+		MIT1002_03436	0.24	-0.7
3,839,952	-		MIT1002_03436	0.24	-0.2
3,839,952	-		MIT1002_03436	0.24	+1.2
3,839,952	-		MIT1002_03436	0.24	+0.5
3,839,952	-		MIT1002_03436	0.24	-2.0
3,839,956	+		MIT1002_03436	0.25	+1.1
3,839,956	+		MIT1002_03436	0.25	-0.8
3,839,966	+		MIT1002_03436	0.25	-0.0
3,839,969	-		MIT1002_03436	0.25	+0.8
3,839,971	+		MIT1002_03436	0.25	+0.3
3,839,999	-		MIT1002_03436	0.26	+1.0
3,839,999	-		MIT1002_03436	0.26	+0.3
3,840,055	-		MIT1002_03436	0.29	-1.9
3,840,066	+		MIT1002_03436	0.29	-0.6
3,840,068	-		MIT1002_03436	0.29	-0.4
3,840,091	-		MIT1002_03436	0.30	+1.2
3,840,091	-		MIT1002_03436	0.30	+1.5
3,840,091	-		MIT1002_03436	0.30	-3.8
3,840,114	+		MIT1002_03436	0.31	-0.4
3,840,122	-		MIT1002_03436	0.31	-1.7
3,840,153	-		MIT1002_03436	0.33	+0.5
3,840,289	+		MIT1002_03436	0.38	+3.4
3,840,320	+		MIT1002_03436	0.40	-0.9