Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03376

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 3
3,775,919	-		MIT1002_03374	0.62	-2.2
3,775,988	+		MIT1002_03374	0.85	-0.8
3,775,989	+		MIT1002_03374	0.85	+0.3
3,775,998	-		MIT1002_03374	0.88	-0.8
3,776,022	-				-2.9
3,776,022	-				-0.9
3,776,047	+				-2.2
3,776,047	+				+0.2
3,776,055	+				-1.6
3,776,055	+				-1.4
3,776,055	+				+1.3
3,776,069	+				-0.5
3,776,077	-				+1.1
3,776,077	-				+1.0
3,776,077	-				+0.3
3,776,087	+				-0.8
3,776,198	+				-1.3
3,776,227	+		MIT1002_03375	0.12	-0.2
3,776,227	+		MIT1002_03375	0.12	-0.0
3,776,235	-		MIT1002_03375	0.13	+1.0
3,776,245	-		MIT1002_03375	0.15	+2.2
3,776,252	+		MIT1002_03375	0.16	-0.2
3,776,252	-		MIT1002_03375	0.16	+0.6
3,776,295	+		MIT1002_03375	0.24	-0.8
3,776,364	+		MIT1002_03375	0.36	+1.3
3,776,381	+		MIT1002_03375	0.39	-0.6
3,776,416	+		MIT1002_03375	0.45	-1.4
3,776,550	+		MIT1002_03375	0.69	+1.8
3,776,558	-		MIT1002_03375	0.70	+0.5
3,776,573	-		MIT1002_03375	0.73	+0.3
3,776,584	+		MIT1002_03375	0.75	+0.0
3,776,584	+		MIT1002_03375	0.75	+1.3
3,776,704	+				+0.6
3,776,764	+				+2.8
3,776,795	-				-0.4
3,776,795	-				+0.1
3,776,795	-				-0.1
3,776,811	-				-0.1
3,776,856	-				-0.8
3,776,895	+				+0.7
3,776,923	+				+0.1
3,776,976	-		MIT1002_03376	0.11	+0.7
3,776,978	+		MIT1002_03376	0.11	-0.8
3,776,981	+		MIT1002_03376	0.12	+0.1
3,776,981	+		MIT1002_03376	0.12	+2.5
3,776,986	-		MIT1002_03376	0.12	+0.3
3,776,986	-		MIT1002_03376	0.12	-0.1
3,777,015	-		MIT1002_03376	0.13	-0.1
3,777,139	+		MIT1002_03376	0.19	+0.0
3,777,139	+		MIT1002_03376	0.19	-0.8
3,777,147	-		MIT1002_03376	0.19	+0.0
3,777,197	-		MIT1002_03376	0.21	+1.7
3,777,223	-		MIT1002_03376	0.22	-0.7
3,777,302	+		MIT1002_03376	0.26	-3.0
3,777,304	+		MIT1002_03376	0.26	+0.3
3,777,310	-		MIT1002_03376	0.26	-0.4
3,777,367	-		MIT1002_03376	0.29	+0.4
3,777,474	+		MIT1002_03376	0.34	-1.9
3,777,558	+		MIT1002_03376	0.37	+0.4
3,777,626	+		MIT1002_03376	0.41	-0.0
3,777,634	-		MIT1002_03376	0.41	-0.4
3,777,697	+		MIT1002_03376	0.44	-3.6
3,777,735	+		MIT1002_03376	0.45	+0.5
3,777,754	-		MIT1002_03376	0.46	-1.3
3,777,842	-		MIT1002_03376	0.50	-0.4
3,777,878	+		MIT1002_03376	0.52	-0.2
3,777,878	+		MIT1002_03376	0.52	-1.4
3,777,899	-		MIT1002_03376	0.53	+1.7
3,777,906	+		MIT1002_03376	0.53	-1.4
3,777,957	+		MIT1002_03376	0.55	-2.7
3,777,964	-		MIT1002_03376	0.56	+0.5
3,778,067	+		MIT1002_03376	0.60	-0.3
3,778,075	-		MIT1002_03376	0.61	+0.4
3,778,125	+		MIT1002_03376	0.63	+0.7
3,778,125	+		MIT1002_03376	0.63	+0.5
3,778,125	+		MIT1002_03376	0.63	-0.4
3,778,143	-		MIT1002_03376	0.64	-2.3
3,778,143	-		MIT1002_03376	0.64	+0.5
3,778,174	-		MIT1002_03376	0.65	-1.9
3,778,322	-		MIT1002_03376	0.72	-1.5
3,778,322	-		MIT1002_03376	0.72	+1.7
3,778,322	-		MIT1002_03376	0.72	+0.3
3,778,350	+		MIT1002_03376	0.73	+0.1
3,778,358	-		MIT1002_03376	0.73	+0.2
3,778,367	-		MIT1002_03376	0.74	+0.3
3,778,547	-		MIT1002_03376	0.82	-0.2
3,778,794	+				-0.3
3,778,795	+				-0.0
3,778,795	+				-1.5
3,778,830	-				-0.7
3,778,857	+				+0.7
3,778,896	+				-3.4
3,778,965	-				+0.6
3,779,035	-				+0.4
3,779,045	-				-0.5
3,779,104	+				+0.8
3,779,146	+				+1.0
3,779,156	+				+0.4
3,779,163	+				-1.1
3,779,164	-				+0.2
3,779,171	-				+0.9
3,779,171	-				+0.7
3,779,259	+		MIT1002_03377	0.18	-2.8
3,779,259	+		MIT1002_03377	0.18	-0.2
3,779,261	+		MIT1002_03377	0.19	+0.9
3,779,270	+		MIT1002_03377	0.20	+0.7
3,779,278	-		MIT1002_03377	0.20	-0.6
3,779,355	+		MIT1002_03377	0.29	-0.5
3,779,365	+		MIT1002_03377	0.30	+1.5
3,779,373	-		MIT1002_03377	0.31	-1.6
3,779,423	-		MIT1002_03377	0.36	-3.1
3,779,581	-		MIT1002_03377	0.54	+1.0
3,779,699	-		MIT1002_03377	0.67	-0.2
3,779,730	+		MIT1002_03377	0.70	-0.8
3,779,733	-		MIT1002_03377	0.71	-0.5
3,779,733	-		MIT1002_03377	0.71	-2.4
3,779,738	-		MIT1002_03377	0.71	+0.5
3,779,738	-		MIT1002_03377	0.71	-0.4
3,779,740	+		MIT1002_03377	0.71	+0.9
3,779,740	+		MIT1002_03377	0.71	-0.5
3,779,740	+		MIT1002_03377	0.71	+0.3
3,779,740	+		MIT1002_03377	0.71	+0.2
3,779,748	-		MIT1002_03377	0.72	-0.5
3,779,800	-		MIT1002_03377	0.78	-2.6
3,779,800	-		MIT1002_03377	0.78	-0.2
3,779,802	-		MIT1002_03377	0.78	+0.6
3,779,810	-		MIT1002_03377	0.79	-0.1
3,779,827	-		MIT1002_03377	0.81	-0.9
3,779,873	+		MIT1002_03377	0.86	-2.3
3,779,914	-				-0.1
3,779,916	+				-1.0
3,779,924	-				+0.3
3,779,924	-				-3.6