Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03061

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 3
3,414,007	+				+0.4
3,414,015	-				+0.5
3,414,029	+		MIT1002_03060	0.11	-0.5
3,414,037	-		MIT1002_03060	0.12	-1.0
3,414,193	+		MIT1002_03060	0.27	+1.4
3,414,201	-		MIT1002_03060	0.27	+1.1
3,414,201	-		MIT1002_03060	0.27	-0.5
3,414,267	-		MIT1002_03060	0.34	-0.5
3,414,272	-		MIT1002_03060	0.34	+0.4
3,414,277	-		MIT1002_03060	0.35	+0.7
3,414,322	+		MIT1002_03060	0.39	+1.1
3,414,330	-		MIT1002_03060	0.40	-1.6
3,414,330	-		MIT1002_03060	0.40	-1.2
3,414,396	+		MIT1002_03060	0.46	+1.9
3,414,427	-		MIT1002_03060	0.49	-0.3
3,414,488	+		MIT1002_03060	0.55	-2.6
3,414,580	+		MIT1002_03060	0.64	-0.3
3,414,580	+		MIT1002_03060	0.64	+0.1
3,414,580	+		MIT1002_03060	0.64	-1.4
3,414,588	-		MIT1002_03060	0.64	-0.9
3,414,628	+		MIT1002_03060	0.68	+0.9
3,414,644	+		MIT1002_03060	0.70	+0.3
3,414,652	-		MIT1002_03060	0.71	+0.0
3,414,674	-		MIT1002_03060	0.73	+0.6
3,414,676	-		MIT1002_03060	0.73	-0.8
3,414,809	-		MIT1002_03060	0.86	+2.6
3,414,902	+				+1.5
3,414,902	+				+0.8
3,414,910	-				+1.8
3,414,910	-				-0.3
3,414,923	-				+0.8
3,414,999	-				-0.4
3,415,033	-				+0.1
3,415,114	+		MIT1002_03061	0.19	-0.3
3,415,253	+		MIT1002_03061	0.39	-0.3
3,415,363	+		MIT1002_03061	0.55	+0.6
3,415,376	+		MIT1002_03061	0.57	+0.7
3,415,390	+		MIT1002_03061	0.59	-0.0
3,415,392	-		MIT1002_03061	0.59	-0.7
3,415,447	+		MIT1002_03061	0.67	+0.9
3,415,464	+		MIT1002_03061	0.70	+1.9
3,415,466	-		MIT1002_03061	0.70	+1.6
3,415,477	+		MIT1002_03061	0.71	+0.1
3,415,483	+		MIT1002_03061	0.72	-2.3
3,415,499	+		MIT1002_03061	0.75	+1.3
3,415,507	+		MIT1002_03061	0.76	+0.2
3,415,509	+		MIT1002_03061	0.76	-0.5
3,415,527	-		MIT1002_03061	0.79	-1.9
3,415,527	-		MIT1002_03061	0.79	+0.3
3,415,621	-				-3.0
3,415,621	-				+0.6
3,415,626	+				+0.5
3,415,639	+				+0.3
3,415,670	-				-1.8
3,415,687	+				-0.8
3,415,712	+				-1.6
3,415,783	-				-6.0
3,415,816	-				-5.6
3,416,040	+		MIT1002_03062	0.36	-4.3
3,416,048	-		MIT1002_03062	0.37	-5.4
3,416,201	-		MIT1002_03062	0.56	-5.3
3,416,201	-		MIT1002_03062	0.56	-3.4
3,416,250	+		MIT1002_03062	0.62	-2.6
3,416,258	-		MIT1002_03062	0.63	-2.9
3,416,316	+		MIT1002_03062	0.70	-4.7
3,416,324	-		MIT1002_03062	0.71	-2.8
3,416,357	+		MIT1002_03062	0.75	-3.7
3,416,401	+		MIT1002_03062	0.80	-4.1
3,416,546	-				-2.6