Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02444

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 3
2,725,393	-		MIT1002_02443	0.38	-0.3
2,725,393	-		MIT1002_02443	0.38	-0.8
2,725,395	+		MIT1002_02443	0.39	+1.5
2,725,453	-		MIT1002_02443	0.43	-1.0
2,725,494	-		MIT1002_02443	0.46	+0.6
2,725,510	+		MIT1002_02443	0.48	+0.9
2,725,513	-		MIT1002_02443	0.48	+0.6
2,725,517	-		MIT1002_02443	0.48	+0.1
2,725,531	+		MIT1002_02443	0.49	+0.2
2,725,555	-		MIT1002_02443	0.51	-0.1
2,725,566	-		MIT1002_02443	0.52	-1.3
2,725,573	+		MIT1002_02443	0.53	-0.6
2,725,660	+		MIT1002_02443	0.59	-1.3
2,725,660	+		MIT1002_02443	0.59	+0.1
2,725,660	+		MIT1002_02443	0.59	-0.3
2,725,660	+		MIT1002_02443	0.59	+1.6
2,725,668	-		MIT1002_02443	0.60	-0.8
2,725,668	-		MIT1002_02443	0.60	+1.1
2,725,668	-		MIT1002_02443	0.60	-0.4
2,725,668	-		MIT1002_02443	0.60	-2.9
2,725,668	-		MIT1002_02443	0.60	+0.6
2,725,668	-		MIT1002_02443	0.60	+0.5
2,725,740	-		MIT1002_02443	0.66	+1.0
2,725,775	-		MIT1002_02443	0.68	+1.4
2,725,814	-		MIT1002_02443	0.71	-0.0
2,725,814	-		MIT1002_02443	0.71	+1.2
2,725,816	+		MIT1002_02443	0.72	-1.4
2,725,816	+		MIT1002_02443	0.72	+1.6
2,725,816	+		MIT1002_02443	0.72	-0.7
2,725,816	+		MIT1002_02443	0.72	+0.1
2,725,816	+		MIT1002_02443	0.72	+1.5
2,725,816	+		MIT1002_02443	0.72	-0.9
2,725,824	-		MIT1002_02443	0.72	+0.2
2,725,830	-		MIT1002_02443	0.73	+0.1
2,725,865	+		MIT1002_02443	0.75	+0.2
2,725,866	-		MIT1002_02443	0.75	-2.5
2,725,891	+		MIT1002_02443	0.77	-0.0
2,725,891	+		MIT1002_02443	0.77	-0.8
2,725,891	+		MIT1002_02443	0.77	+2.2
2,725,891	+		MIT1002_02443	0.77	-0.4
2,725,891	+		MIT1002_02443	0.77	+1.5
2,725,899	-		MIT1002_02443	0.78	+0.5
2,725,899	-		MIT1002_02443	0.78	+0.2
2,725,899	-		MIT1002_02443	0.78	+0.4
2,725,899	-		MIT1002_02443	0.78	+0.5
2,725,899	-		MIT1002_02443	0.78	+0.3
2,725,929	-		MIT1002_02443	0.80	+0.8
2,725,957	-		MIT1002_02443	0.83	+1.1
2,725,960	+		MIT1002_02443	0.83	-0.4
2,725,960	+		MIT1002_02443	0.83	+0.3
2,725,960	+		MIT1002_02443	0.83	+0.9
2,725,994	+		MIT1002_02443	0.85	+0.6
2,726,001	+		MIT1002_02443	0.86	+0.3
2,726,055	-				+0.8
2,726,055	-				+0.1
2,726,058	-				+0.1
2,726,082	-				-2.3
2,726,089	+				+3.2
2,726,097	-				+1.9
2,726,097	-				+1.6
2,726,134	-				-0.6
2,726,160	-				-0.1
2,726,184	+				+0.0
2,726,191	+				-0.9
2,726,191	+				+0.7
2,726,192	-				+0.2
2,726,198	+				-0.2
2,726,199	+				+0.3
2,726,199	+				-2.7
2,726,199	+				-0.5
2,726,199	+				+1.7
2,726,207	-				+0.3
2,726,207	-				+0.2
2,726,207	-				-0.2
2,726,207	-				-1.1
2,726,241	+				-2.6
2,726,359	+				-0.7
2,726,409	+		MIT1002_02444	0.10	-0.0
2,726,417	-		MIT1002_02444	0.11	+2.6
2,726,456	+		MIT1002_02444	0.15	+0.6
2,726,468	+		MIT1002_02444	0.17	-0.1
2,726,496	-		MIT1002_02444	0.20	+0.1
2,726,727	-		MIT1002_02444	0.44	+0.5
2,726,750	-		MIT1002_02444	0.47	+2.5
2,726,828	+		MIT1002_02444	0.55	-1.4
2,726,898	-		MIT1002_02444	0.62	+0.4
2,726,946	+		MIT1002_02444	0.68	+1.9
2,726,992	-		MIT1002_02444	0.73	-1.2
2,727,025	+		MIT1002_02444	0.76	-2.9
2,727,084	+		MIT1002_02444	0.82	-3.0
2,727,097	-		MIT1002_02444	0.84	+1.2
2,727,173	-				-1.3
2,727,201	-				-0.0
2,727,201	-				-2.6
2,727,258	-				+0.5
2,727,324	+				+0.4
2,727,324	-				+1.0
2,727,332	-				+0.4
2,727,375	+		MIT1002_02445	0.22	+0.4
2,727,394	+		MIT1002_02445	0.29	+0.6
2,727,457	+				-0.7
2,727,459	+				-1.6
2,727,466	-				-0.4
2,727,505	-				+0.1
2,727,574	+				-0.7
2,727,581	+				-1.8
2,727,582	-				-0.2
2,727,631	+				+0.9
2,727,640	+				-0.2
2,727,642	+				+1.2
2,727,642	+				+1.4
2,727,650	-				-0.1
2,727,688	+				-0.6
2,727,748	+		MIT1002_02446	0.11	-0.6
2,727,748	+		MIT1002_02446	0.11	-0.9
2,727,748	+		MIT1002_02446	0.11	+1.5
2,727,763	-		MIT1002_02446	0.12	-1.6
2,727,770	+		MIT1002_02446	0.12	-0.9
2,727,785	-		MIT1002_02446	0.12	+0.7
2,727,792	+		MIT1002_02446	0.13	+0.1
2,727,812	-		MIT1002_02446	0.13	+1.4
2,727,846	-		MIT1002_02446	0.15	+0.9
2,727,899	-		MIT1002_02446	0.17	+1.5
2,727,970	-		MIT1002_02446	0.19	+0.1
2,728,018	+		MIT1002_02446	0.21	-3.3
2,728,026	-		MIT1002_02446	0.21	+1.1
2,728,198	+		MIT1002_02446	0.28	+0.5
2,728,198	+		MIT1002_02446	0.28	-0.6
2,728,208	+		MIT1002_02446	0.28	+0.4
2,728,208	+		MIT1002_02446	0.28	-1.0
2,728,208	+		MIT1002_02446	0.28	-1.5
2,728,208	+		MIT1002_02446	0.28	+0.7
2,728,216	-		MIT1002_02446	0.28	+0.2
2,728,221	-		MIT1002_02446	0.28	-1.4
2,728,224	+		MIT1002_02446	0.29	+0.6
2,728,224	+		MIT1002_02446	0.29	-0.7
2,728,224	+		MIT1002_02446	0.29	+0.3
2,728,224	+		MIT1002_02446	0.29	-1.6
2,728,224	+		MIT1002_02446	0.29	+2.0
2,728,224	+		MIT1002_02446	0.29	-0.2
2,728,232	-		MIT1002_02446	0.29	-0.6
2,728,234	+		MIT1002_02446	0.29	+1.4
2,728,234	+		MIT1002_02446	0.29	+0.1
2,728,242	-		MIT1002_02446	0.29	+0.3
2,728,242	-		MIT1002_02446	0.29	-0.2
2,728,243	-		MIT1002_02446	0.29	-0.8