Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02168

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_02166 and MIT1002_02167 are separated by 239 nucleotidesMIT1002_02167 and MIT1002_02168 are separated by 56 nucleotidesMIT1002_02168 and MIT1002_02169 overlap by 1 nucleotidesMIT1002_02169 and MIT1002_02170 overlap by 1 nucleotidesMIT1002_02170 and MIT1002_02171 overlap by 4 nucleotides MIT1002_02166: MIT1002_02166 - tRNA-Ser, at 2,422,675 to 2,422,766 _02166 MIT1002_02167: MIT1002_02167 - Modulator of FtsH protease YccA, at 2,423,006 to 2,423,671 _02167 MIT1002_02168: MIT1002_02168 - Sulfurtransferase TusD, at 2,423,728 to 2,424,117 _02168 MIT1002_02169: MIT1002_02169 - tRNA 2-thiouridine synthesizing protein C, at 2,424,117 to 2,424,485 _02169 MIT1002_02170: MIT1002_02170 - hypothetical protein, at 2,424,485 to 2,424,805 _02170 MIT1002_02171: MIT1002_02171 - Sulfurtransferase TusE, at 2,424,802 to 2,425,149 _02171 Position (kb) 2423 2424 2425Strain fitness (log2 ratio) -1 0 1at 2422.855 kb on + strandat 2422.859 kb on + strandat 2422.867 kb on - strandat 2423.023 kb on + strandat 2423.023 kb on + strandat 2423.079 kb on + strand, within MIT1002_02167at 2423.079 kb on + strand, within MIT1002_02167at 2423.079 kb on + strand, within MIT1002_02167at 2423.079 kb on + strand, within MIT1002_02167at 2423.102 kb on + strand, within MIT1002_02167at 2423.126 kb on + strand, within MIT1002_02167at 2423.318 kb on + strand, within MIT1002_02167at 2423.334 kb on + strand, within MIT1002_02167at 2423.342 kb on + strand, within MIT1002_02167at 2423.435 kb on + strand, within MIT1002_02167at 2423.490 kb on + strand, within MIT1002_02167at 2423.497 kb on + strand, within MIT1002_02167

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 3
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2,422,855 + +0.2
2,422,859 + +0.8
2,422,867 - +0.2
2,423,023 + -0.5
2,423,023 + +0.7
2,423,079 + MIT1002_02167 0.11 -0.8
2,423,079 + MIT1002_02167 0.11 +0.4
2,423,079 + MIT1002_02167 0.11 -1.1
2,423,079 + MIT1002_02167 0.11 -0.5
2,423,102 + MIT1002_02167 0.14 +1.4
2,423,126 + MIT1002_02167 0.18 +0.6
2,423,318 + MIT1002_02167 0.47 -1.4
2,423,334 + MIT1002_02167 0.49 +0.7
2,423,342 + MIT1002_02167 0.50 -0.2
2,423,435 + MIT1002_02167 0.64 +0.3
2,423,490 + MIT1002_02167 0.73 -1.4
2,423,497 + MIT1002_02167 0.74 -0.1

Or see this region's nucleotide sequence