Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02142

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 3
2,401,755	+		MIT1002_02140	0.72	+2.3
2,401,763	-		MIT1002_02140	0.73	-1.4
2,401,841	+		MIT1002_02140	0.80	-0.2
2,401,859	-		MIT1002_02140	0.82	-2.3
2,401,865	+		MIT1002_02140	0.83	-0.5
2,401,944	+				+1.3
2,401,962	+				-0.7
2,401,962	+				-0.7
2,401,964	+				+0.5
2,401,980	-				+1.2
2,401,996	-				+1.5
2,402,100	+				-0.4
2,402,108	-				-3.5
2,402,108	-				-0.5
2,402,108	-				+0.7
2,402,108	-				+0.5
2,402,312	+		MIT1002_02141	0.40	-0.2
2,402,312	+		MIT1002_02141	0.40	-0.3
2,402,312	+		MIT1002_02141	0.40	-1.8
2,402,312	+		MIT1002_02141	0.40	+0.8
2,402,312	+		MIT1002_02141	0.40	+0.7
2,402,320	-		MIT1002_02141	0.41	-0.6
2,402,322	+		MIT1002_02141	0.41	-3.6
2,402,330	-		MIT1002_02141	0.42	-0.6
2,402,463	+		MIT1002_02141	0.63	+0.9
2,402,471	-		MIT1002_02141	0.64	-1.0
2,402,471	-		MIT1002_02141	0.64	-1.7
2,402,806	+		MIT1002_02142	0.13	+0.8
2,402,869	+		MIT1002_02142	0.21	+0.8
2,402,903	-		MIT1002_02142	0.26	+0.5
2,402,941	-		MIT1002_02142	0.30	+0.9
2,402,980	-		MIT1002_02142	0.35	-0.4
2,402,981	+		MIT1002_02142	0.35	-1.4
2,402,981	-		MIT1002_02142	0.35	+0.4
2,402,981	-		MIT1002_02142	0.35	-3.2
2,402,981	-		MIT1002_02142	0.35	+1.6
2,403,039	+		MIT1002_02142	0.43	+0.1
2,403,047	-		MIT1002_02142	0.44	+0.3
2,403,150	-		MIT1002_02142	0.57	+1.4
2,403,334	-		MIT1002_02142	0.80	+0.0
2,403,345	+		MIT1002_02142	0.81	+1.0
2,403,502	-				-1.4
2,403,555	+				-0.3
2,403,563	-		MIT1002_02143	0.11	+0.3
2,403,629	-		MIT1002_02143	0.20	-1.1
2,403,817	-		MIT1002_02143	0.45	-1.1
2,403,856	-		MIT1002_02143	0.51	-0.5
2,403,944	+		MIT1002_02143	0.63	-1.6
2,403,944	+		MIT1002_02143	0.63	+1.4
2,404,080	+		MIT1002_02143	0.81	-0.6
2,404,085	+		MIT1002_02143	0.82	-0.2
2,404,103	+		MIT1002_02143	0.85	-0.7
2,404,180	+				-1.2
2,404,222	+				-2.0
2,404,247	+				+0.4
2,404,247	+				-0.7
2,404,333	+				+0.5
2,404,351	+				+1.2
2,404,359	-				+0.8
2,404,376	+		MIT1002_02144	0.12	+0.8
2,404,384	+		MIT1002_02144	0.14	-0.3
2,404,417	-		MIT1002_02144	0.19	+5.9
2,404,432	+		MIT1002_02144	0.21	-0.5