Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01562

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 3
1,717,910	-		MIT1002_01561	0.68	-0.0
1,717,945	+		MIT1002_01561	0.69	-2.4
1,717,954	+		MIT1002_01561	0.70	-0.4
1,717,954	+		MIT1002_01561	0.70	+0.2
1,717,962	-		MIT1002_01561	0.70	-3.5
1,717,962	-		MIT1002_01561	0.70	-2.1
1,717,962	-		MIT1002_01561	0.70	-1.6
1,718,041	-		MIT1002_01561	0.73	-0.8
1,718,073	-		MIT1002_01561	0.74	+0.3
1,718,095	+		MIT1002_01561	0.74	-3.6
1,718,157	-		MIT1002_01561	0.76	-3.5
1,718,172	-		MIT1002_01561	0.77	+0.1
1,718,189	+		MIT1002_01561	0.77	-0.8
1,718,211	+		MIT1002_01561	0.78	-2.4
1,718,218	-		MIT1002_01561	0.78	-3.3
1,718,256	+		MIT1002_01561	0.80	+0.5
1,718,264	-		MIT1002_01561	0.80	-1.3
1,718,295	-		MIT1002_01561	0.81	-0.6
1,718,295	-		MIT1002_01561	0.81	-1.0
1,718,370	-		MIT1002_01561	0.83	-0.4
1,718,430	-		MIT1002_01561	0.85	+0.3
1,718,554	-		MIT1002_01561	0.89	-1.9
1,718,569	-		MIT1002_01561	0.90	-1.0
1,718,587	-				-1.0
1,718,659	+				+0.5
1,718,666	-				+0.1
1,718,729	+				-1.9
1,718,736	+				-0.4
1,718,825	-				-0.5
1,718,825	-				-0.2
1,718,884	-				-0.7
1,718,903	+				-0.7
1,718,903	+				-2.0
1,718,911	-				+0.1
1,718,911	-				-0.5
1,719,019	+		MIT1002_01562	0.12	+0.7
1,719,079	-		MIT1002_01562	0.18	+0.8
1,719,126	-		MIT1002_01562	0.22	-1.1
1,719,132	+		MIT1002_01562	0.22	-0.1
1,719,135	-		MIT1002_01562	0.23	-1.3
1,719,219	+		MIT1002_01562	0.30	-0.1
1,719,229	+		MIT1002_01562	0.31	+0.4
1,719,229	+		MIT1002_01562	0.31	-0.2
1,719,290	-		MIT1002_01562	0.36	+0.3
1,719,305	-		MIT1002_01562	0.38	-0.2
1,719,432	+		MIT1002_01562	0.49	+0.7
1,719,450	-		MIT1002_01562	0.50	-0.0
1,719,457	-		MIT1002_01562	0.51	-2.0
1,719,468	-		MIT1002_01562	0.52	-0.4
1,719,469	-		MIT1002_01562	0.52	-0.3
1,719,528	+		MIT1002_01562	0.57	+1.0
1,719,531	-		MIT1002_01562	0.57	-0.3
1,719,531	-		MIT1002_01562	0.57	+0.2
1,719,534	-		MIT1002_01562	0.58	-1.3
1,719,545	-		MIT1002_01562	0.59	-2.6
1,719,545	-		MIT1002_01562	0.59	-1.5
1,719,552	-		MIT1002_01562	0.59	-0.6
1,719,571	-		MIT1002_01562	0.61	+1.3
1,719,604	-		MIT1002_01562	0.64	-0.5
1,719,689	+		MIT1002_01562	0.71	-0.6
1,719,695	-		MIT1002_01562	0.72	+1.0
1,719,697	-		MIT1002_01562	0.72	-0.4
1,719,697	-		MIT1002_01562	0.72	-0.6
1,719,697	-		MIT1002_01562	0.72	-0.3
1,719,813	-		MIT1002_01562	0.82	-3.9
1,719,827	+		MIT1002_01562	0.84	-2.9
1,719,851	+		MIT1002_01562	0.86	-0.8
1,719,863	+		MIT1002_01562	0.87	-3.6
1,719,873	-		MIT1002_01562	0.88	-0.9
1,719,888	-		MIT1002_01562	0.89	-1.1
1,719,903	+				-0.9
1,719,911	-				+0.1
1,719,911	-				+0.0
1,719,911	-				-3.6
1,719,911	-				-0.7
1,719,913	+				-3.0
1,719,913	+				-1.8
1,719,934	+				-0.7
1,719,976	+				-1.2
1,719,976	+				-1.3
1,719,976	+				-1.6
1,719,976	+				-2.6
1,719,976	+				+1.0
1,719,976	+				-2.7
1,719,976	+				-1.0
1,719,979	-				-3.5
1,719,984	-				-3.8
1,719,984	-				+0.1
1,719,984	-				-1.5
1,719,984	-				-3.5
1,719,984	-				-1.6
1,720,061	+				-1.8
1,720,144	-				+0.5
1,720,144	-				-0.4
1,720,326	-				+0.5
1,720,331	+				-0.3
1,720,462	+				-0.3
1,720,465	-				+1.2
1,720,470	-				-2.3
1,720,480	-				+0.5
1,720,488	+		MIT1002_01563	0.10	-0.5
1,720,551	+		MIT1002_01563	0.13	+1.4
1,720,575	-		MIT1002_01563	0.15	-0.2
1,720,585	+		MIT1002_01563	0.15	+0.8
1,720,625	-		MIT1002_01563	0.17	+0.3
1,720,840	-		MIT1002_01563	0.29	-2.6
1,720,851	+		MIT1002_01563	0.29	-0.5