Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01320

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 3
1,464,481	+				-0.9
1,464,486	+				+0.0
1,464,514	+				+0.6
1,464,540	+		MIT1002_01318	0.14	+0.5
1,464,548	-		MIT1002_01318	0.16	-3.4
1,464,557	+		MIT1002_01318	0.19	+0.1
1,464,584	+		MIT1002_01318	0.27	+1.1
1,464,592	-		MIT1002_01318	0.29	-0.0
1,464,630	-		MIT1002_01318	0.41	-1.6
1,464,659	+		MIT1002_01318	0.50	-2.6
1,464,667	-		MIT1002_01318	0.52	-2.6
1,464,667	-		MIT1002_01318	0.52	-1.0
1,464,721	+		MIT1002_01318	0.68	+1.5
1,464,746	-		MIT1002_01318	0.76	+0.9
1,464,757	+		MIT1002_01318	0.79	-0.8
1,464,782	+		MIT1002_01318	0.86	-3.6
1,464,800	-				+0.8
1,464,875	+				+0.9
1,464,923	-				-0.1
1,465,076	+		MIT1002_01319	0.25	-3.4
1,465,076	+		MIT1002_01319	0.25	-2.9
1,465,144	-		MIT1002_01319	0.48	-0.1
1,465,177	-		MIT1002_01319	0.58	+2.5
1,465,240	-		MIT1002_01319	0.79	-0.5
1,465,374	+				+0.6
1,465,382	+				-1.0
1,465,382	-				+0.3
1,465,414	-				-0.7
1,465,416	+				+0.2
1,465,417	+				+0.0
1,465,417	+				+0.7
1,465,450	-				-0.2
1,465,517	+		MIT1002_01320	0.10	+0.1
1,465,571	-		MIT1002_01320	0.13	-0.4
1,465,614	+		MIT1002_01320	0.16	-2.4
1,465,620	-		MIT1002_01320	0.16	-1.3
1,465,624	+		MIT1002_01320	0.17	-2.4
1,465,624	+		MIT1002_01320	0.17	+0.3
1,465,726	+		MIT1002_01320	0.23	-1.0
1,465,734	-		MIT1002_01320	0.23	+0.2
1,465,762	+		MIT1002_01320	0.25	-0.3
1,465,815	+		MIT1002_01320	0.28	-0.0
1,465,823	-		MIT1002_01320	0.28	-3.5
1,465,823	-		MIT1002_01320	0.28	-0.5
1,465,831	+		MIT1002_01320	0.29	+1.0
1,465,864	-		MIT1002_01320	0.31	+1.0
1,465,900	+		MIT1002_01320	0.33	-1.4
1,465,994	-		MIT1002_01320	0.39	+0.2
1,466,033	-		MIT1002_01320	0.41	+0.2
1,466,092	-		MIT1002_01320	0.44	-1.3
1,466,134	+		MIT1002_01320	0.47	+2.5
1,466,134	+		MIT1002_01320	0.47	+0.9
1,466,146	+		MIT1002_01320	0.48	-0.5
1,466,205	-		MIT1002_01320	0.51	-1.1
1,466,225	-		MIT1002_01320	0.52	-1.2
1,466,325	+		MIT1002_01320	0.58	-0.3
1,466,360	+		MIT1002_01320	0.60	-0.1
1,466,445	+		MIT1002_01320	0.65	-0.0
1,466,485	+		MIT1002_01320	0.68	-2.0
1,466,485	+		MIT1002_01320	0.68	-0.0
1,466,485	+		MIT1002_01320	0.68	-0.9
1,466,493	-		MIT1002_01320	0.68	-1.3
1,466,493	-		MIT1002_01320	0.68	+0.9
1,466,577	-		MIT1002_01320	0.73	+0.3
1,466,587	-		MIT1002_01320	0.74	+0.3
1,466,613	+		MIT1002_01320	0.75	-0.1
1,466,656	-		MIT1002_01320	0.78	+0.6
1,466,731	+		MIT1002_01320	0.83	+0.9
1,466,732	-		MIT1002_01320	0.83	-1.1
1,466,737	-		MIT1002_01320	0.83	+0.8
1,466,821	-		MIT1002_01320	0.88	+0.2
1,466,822	+		MIT1002_01320	0.88	-1.0
1,466,822	-		MIT1002_01320	0.88	-3.1
1,466,822	-		MIT1002_01320	0.88	-0.3
1,466,847	+		MIT1002_01320	0.89	+0.4
1,466,857	+				+0.5
1,466,857	+				-0.1
1,466,908	-				-0.8
1,466,957	+				+0.5
1,466,957	+				+1.2
1,466,965	-				+0.2
1,466,965	-				-0.2
1,466,965	-				-0.5
1,467,102	+				+0.4
1,467,124	-				-3.1
1,467,151	+				-1.7
1,467,159	-				+1.1
1,467,253	-				-0.1
1,467,273	-				+0.4
1,467,273	-				+0.6
1,467,317	-				-0.8
1,467,336	-		MIT1002_01321	0.14	-0.4
1,467,356	+		MIT1002_01321	0.18	-0.5
1,467,472	+		MIT1002_01321	0.45	-0.1
1,467,490	-		MIT1002_01321	0.49	+0.1
1,467,490	-		MIT1002_01321	0.49	+1.8
1,467,509	-		MIT1002_01321	0.53	-1.8
1,467,544	+		MIT1002_01321	0.61	-0.0
1,467,544	+		MIT1002_01321	0.61	+0.2
1,467,557	-		MIT1002_01321	0.64	-0.3
1,467,580	+		MIT1002_01321	0.69	-2.7
1,467,580	+		MIT1002_01321	0.69	+1.1
1,467,585	+		MIT1002_01321	0.70	+1.8
1,467,782	+				+0.8
1,467,787	+				-1.0
1,467,793	-				-2.3
1,467,834	+				-5.0
1,467,842	-				+1.2
1,467,842	-				-0.2
1,467,866	-				-0.6
1,467,875	+				-0.7
1,467,883	-				+0.6
1,467,883	-				-1.8
1,467,887	+				+0.1
1,467,887	+				+1.0
1,467,919	+				+0.3
1,467,944	-				-0.0
1,468,000	-				+0.4
1,468,021	-				-1.1