Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01239

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 3
1,364,805	-		MIT1002_01238	0.26	+1.9
1,364,851	-		MIT1002_01238	0.30	+1.5
1,364,951	+		MIT1002_01238	0.40	+0.7
1,364,951	+		MIT1002_01238	0.40	+0.8
1,364,951	+		MIT1002_01238	0.40	-0.0
1,364,959	-		MIT1002_01238	0.40	+1.4
1,365,040	-		MIT1002_01238	0.48	+1.6
1,365,090	+		MIT1002_01238	0.53	-2.8
1,365,195	+		MIT1002_01238	0.63	-0.4
1,365,203	-		MIT1002_01238	0.63	-0.5
1,365,235	-		MIT1002_01238	0.66	+1.7
1,365,286	+		MIT1002_01238	0.71	+1.3
1,365,306	-		MIT1002_01238	0.73	+1.2
1,365,377	-		MIT1002_01238	0.80	+0.4
1,365,414	+		MIT1002_01238	0.83	-0.6
1,365,416	+		MIT1002_01238	0.84	+0.1
1,365,422	-		MIT1002_01238	0.84	+1.0
1,365,422	-		MIT1002_01238	0.84	-0.1
1,365,422	-		MIT1002_01238	0.84	+1.0
1,365,441	+		MIT1002_01238	0.86	-0.1
1,365,449	-		MIT1002_01238	0.87	+2.5
1,365,476	+		MIT1002_01238	0.89	-1.5
1,365,476	+		MIT1002_01238	0.89	+1.2
1,365,484	-				+0.7
1,365,522	-				+0.2
1,365,522	-				-1.9
1,365,524	+				+1.2
1,365,567	+				-0.5
1,365,756	-				-0.5
1,365,756	-				-0.0
1,365,766	-				-1.3
1,365,820	+				+0.1
1,365,885	+				-2.2
1,365,885	+				+0.1
1,365,898	-				+1.2
1,365,902	+				-0.6
1,365,975	+				-1.7
1,365,975	+				-4.6
1,366,061	+				-1.8
1,366,113	-		MIT1002_01239	0.11	-1.4
1,366,131	-		MIT1002_01239	0.12	-1.2
1,366,270	+		MIT1002_01239	0.16	-0.0
1,366,278	-		MIT1002_01239	0.17	-0.8
1,366,312	-		MIT1002_01239	0.18	-0.6
1,366,348	+		MIT1002_01239	0.19	+0.3
1,366,428	+		MIT1002_01239	0.22	-1.4
1,366,428	+		MIT1002_01239	0.22	-3.8
1,366,428	+		MIT1002_01239	0.22	-0.8
1,366,428	+		MIT1002_01239	0.22	-4.3
1,366,428	+		MIT1002_01239	0.22	-1.5
1,366,428	+		MIT1002_01239	0.22	-2.1
1,366,428	+		MIT1002_01239	0.22	-2.7
1,366,436	-		MIT1002_01239	0.22	-1.7
1,366,518	-		MIT1002_01239	0.25	-0.9
1,366,606	+		MIT1002_01239	0.28	-0.6
1,366,606	+		MIT1002_01239	0.28	-1.5
1,366,614	-		MIT1002_01239	0.28	-1.3
1,366,614	-		MIT1002_01239	0.28	-3.0
1,366,614	-		MIT1002_01239	0.28	-1.5
1,366,624	-		MIT1002_01239	0.28	-1.1
1,366,643	+		MIT1002_01239	0.29	-3.2
1,366,720	-		MIT1002_01239	0.32	+3.3
1,366,734	+		MIT1002_01239	0.32	-1.4
1,366,746	-		MIT1002_01239	0.32	-1.2
1,366,746	-		MIT1002_01239	0.32	-2.1
1,366,817	+		MIT1002_01239	0.35	-0.4
1,366,822	-		MIT1002_01239	0.35	-3.6
1,366,827	-		MIT1002_01239	0.35	-1.2
1,366,849	+		MIT1002_01239	0.36	-1.6
1,366,991	-		MIT1002_01239	0.41	-2.0
1,367,049	-		MIT1002_01239	0.43	-0.1
1,367,059	-		MIT1002_01239	0.43	-0.9
1,367,068	+		MIT1002_01239	0.43	+0.8
1,367,126	-		MIT1002_01239	0.45	-1.8
1,367,184	+		MIT1002_01239	0.47	-2.9
1,367,235	-		MIT1002_01239	0.49	-0.0
1,367,235	-		MIT1002_01239	0.49	-3.2
1,367,341	+		MIT1002_01239	0.53	-3.5
1,367,354	-		MIT1002_01239	0.53	-2.8
1,367,362	+		MIT1002_01239	0.53	-0.7
1,367,362	+		MIT1002_01239	0.53	-0.5
1,367,373	+		MIT1002_01239	0.54	-2.4
1,367,429	+		MIT1002_01239	0.56	-0.3
1,367,527	-		MIT1002_01239	0.59	-3.4
1,367,568	+		MIT1002_01239	0.60	-1.7
1,367,660	-		MIT1002_01239	0.63	-0.2
1,367,666	+		MIT1002_01239	0.64	-1.5
1,367,666	+		MIT1002_01239	0.64	-1.0
1,367,674	-		MIT1002_01239	0.64	-0.9
1,367,688	+		MIT1002_01239	0.64	-1.1
1,367,698	+		MIT1002_01239	0.65	-2.2
1,367,764	-		MIT1002_01239	0.67	-1.1
1,367,764	-		MIT1002_01239	0.67	-3.6
1,367,843	+		MIT1002_01239	0.70	-1.0
1,367,843	+		MIT1002_01239	0.70	-0.6
1,367,843	+		MIT1002_01239	0.70	-4.3
1,367,868	+		MIT1002_01239	0.70	-1.5
1,367,873	+		MIT1002_01239	0.71	-3.5
1,367,881	-		MIT1002_01239	0.71	+0.1
1,367,883	+		MIT1002_01239	0.71	-0.5
1,367,946	+		MIT1002_01239	0.73	+0.1
1,367,954	-		MIT1002_01239	0.73	-1.8
1,367,978	+		MIT1002_01239	0.74	-0.9
1,367,986	-		MIT1002_01239	0.74	-1.6
1,367,994	-		MIT1002_01239	0.75	-2.2
1,368,107	+		MIT1002_01239	0.79	-3.5
1,368,156	-		MIT1002_01239	0.80	-2.9
1,368,156	-		MIT1002_01239	0.80	-1.9
1,368,156	-		MIT1002_01239	0.80	-1.1
1,368,174	+		MIT1002_01239	0.81	-2.5
1,368,189	+		MIT1002_01239	0.81	-0.5
1,368,317	+		MIT1002_01239	0.86	-2.8
1,368,334	+		MIT1002_01239	0.86	-0.1
1,368,339	+		MIT1002_01239	0.86	-3.5
1,368,362	+		MIT1002_01239	0.87	-1.4
1,368,415	+		MIT1002_01239	0.89	-1.5
1,368,423	-		MIT1002_01239	0.89	-1.7
1,368,425	+		MIT1002_01239	0.89	-2.1
1,368,425	+		MIT1002_01239	0.89	-2.4
1,368,433	-		MIT1002_01239	0.90	-1.8
1,368,503	+				-1.7
1,368,511	-				-2.2
1,368,513	+				-1.7
1,368,520	+				-0.9
1,368,529	+				+0.1
1,368,669	+				-1.1
1,368,669	+				-1.7
1,368,677	-				-0.8
1,368,724	+				-4.1
1,368,732	-				-0.7
1,368,739	-				-1.1
1,368,739	-				-0.5
1,368,739	-				-0.4
1,369,013	+				+1.4
1,369,018	+				-0.3
1,369,072	-		MIT1002_01240	0.35	-0.6
1,369,095	+		MIT1002_01240	0.47	-2.3
1,369,172	+		MIT1002_01240	0.87	-1.7
1,369,294	+				+1.1
1,369,299	+				+0.6
1,369,302	-				-1.2
1,369,302	-				+0.4
1,369,312	-				-0.0
1,369,312	-				+1.7
1,369,312	-				+0.2
1,369,312	-				+1.8
1,369,312	-				+1.1
1,369,324	-				+0.2
1,369,485	-				-0.4
1,369,493	+				+0.1
1,369,505	-				-2.9
1,369,595	-		MIT1002_01241	0.20	+1.3
1,369,616	-		MIT1002_01241	0.24	+0.5
1,369,678	+		MIT1002_01241	0.34	+1.0
1,369,686	-		MIT1002_01241	0.35	+0.5
1,369,686	-		MIT1002_01241	0.35	+1.2